{ "inputs": { "aggregate_clusters_workflow.aggregate_clusters.CustomEvents": "workspace.custom_events_file", "aggregate_clusters_workflow.aggregate_clusters.miRNAMaturecnmf": "this.miR_CNMF_bestcluster", "aggregate_clusters_workflow.aggregate_clusters.package": "workspace.package", "aggregate_clusters_workflow.aggregate_clusters.rppahc": "", "aggregate_clusters_workflow.aggregate_clusters.miRNAMaturehc": "this.miR_Mature_Clustering_Consensus_bestcluster", "aggregate_clusters_workflow.aggregate_clusters.miRNAcnmf": "", "aggregate_clusters_workflow.aggregate_clusters.lincRNAhc": "this.mRNA_lincRNA_Clustering_Consensus_bestcluster", "aggregate_clusters_workflow.aggregate_clusters.methylationhc": "this.Methylation__HM450_Clustering_Consensus_bestcluster", "aggregate_clusters_workflow.aggregate_clusters.copynumber": "this.CN_CNMF__bestcluster", "aggregate_clusters_workflow.aggregate_clusters.mergedfile": "this.name", "aggregate_clusters_workflow.aggregate_clusters.methylationcnmf": "this.Methylation_CNMF_bestcluster", "aggregate_clusters_workflow.aggregate_clusters.miRNAhc": "", "aggregate_clusters_workflow.aggregate_clusters.copynumberth": "this.CopyNumber_Clustering_CNMF_thresholded__bestcluster", "aggregate_clusters_workflow.aggregate_clusters.lincRNAcnmf": "this.mRNA_lincRNA_CNMF_bestcluster", "aggregate_clusters_workflow.aggregate_clusters.rppacnmf": "", "aggregate_clusters_workflow.aggregate_clusters.mRNAcnmf": "this.mRNA_protein_coding_CNMF_bestcluster", "aggregate_clusters_workflow.aggregate_clusters.mRNAhc": "this.mRNA_protein_coding_Clustering_Consensus_bestcluster" }, "methodRepoMethod": { "methodVersion": 5, "methodNamespace": "broadgdac", "methodName": "aggregate_clusters" }, "name": "Aggregate_Molecular_Subtype_Clusters", "prerequisites": {}, "outputs": { "aggregate_clusters_workflow.aggregate_clusters.aggregate_clusters_pkg": "this.pkg__Aggregate_Molecular_Subtype_Clusters", "aggregate_clusters_workflow.aggregate_clusters.aggregate_molecular_clusters_transposed": "this.aggregate_molecular_signatures_trans", "aggregate_clusters_workflow.aggregate_clusters.aggregate_molecular_clusters": "this.aggregate_molecular_signatures" }, "namespace": "broadgdac", "deleted": false, "rootEntityType": "sample_set", "methodConfigVersion": 1 }