Picked up _JAVA_OPTIONS: -Djava.io.tmpdir=/cromwell_root/tmp.RgKX5M 23:36:58.278 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/gatk/build/install/gatk/lib/gkl-0.8.2.jar!/com/intel/gkl/native/libgkl_compression.so 23:36:58.464 INFO GatherVcfsCloud - ------------------------------------------------------------ 23:36:58.465 INFO GatherVcfsCloud - The Genome Analysis Toolkit (GATK) v4.0.1.0 23:36:58.465 INFO GatherVcfsCloud - For support and documentation go to https://software.broadinstitute.org/gatk/ 23:36:58.467 INFO GatherVcfsCloud - Executing as root@8b475c981d35 on Linux v4.9.0-0.bpo.6-amd64 amd64 23:36:58.467 INFO GatherVcfsCloud - Java runtime: OpenJDK 64-Bit Server VM v1.8.0_131-8u131-b11-2ubuntu1.16.04.3-b11 23:36:58.468 INFO GatherVcfsCloud - Start Date/Time: June 8, 2018 11:36:58 PM UTC 23:36:58.468 INFO GatherVcfsCloud - ------------------------------------------------------------ 23:36:58.468 INFO GatherVcfsCloud - ------------------------------------------------------------ 23:36:58.469 INFO GatherVcfsCloud - HTSJDK Version: 2.14.1 23:36:58.469 INFO GatherVcfsCloud - Picard Version: 2.17.2 23:36:58.469 INFO GatherVcfsCloud - HTSJDK Defaults.COMPRESSION_LEVEL : 1 23:36:58.470 INFO GatherVcfsCloud - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false 23:36:58.470 INFO GatherVcfsCloud - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true 23:36:58.470 INFO GatherVcfsCloud - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false 23:36:58.470 INFO GatherVcfsCloud - Deflater: IntelDeflater 23:36:58.470 INFO GatherVcfsCloud - Inflater: IntelInflater 23:36:58.470 INFO GatherVcfsCloud - GCS max retries/reopens: 20 23:36:58.471 INFO GatherVcfsCloud - Using google-cloud-java patch 6d11bef1c81f885c26b2b56c8616b7a705171e4f from https://github.com/droazen/google-cloud-java/tree/dr_all_nio_fixes 23:36:58.471 INFO GatherVcfsCloud - Initializing engine 23:36:58.471 INFO GatherVcfsCloud - Done initializing engine 23:36:58.471 INFO GatherVcfsCloud - Checking inputs. 23:36:59.606 INFO GatherVcfsCloud - Gathering by copying gzip blocks. Will not be able to validate position non-overlap of files. 23:36:59.606 WARN GatherVcfsCloud - Index creation not currently supported when gathering block compressed VCFs. 23:36:59.607 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-0/all_samples.filtered.0.vcf.gz 23:37:04.892 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-1/all_samples.filtered.1.vcf.gz 23:37:06.273 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-2/all_samples.filtered.2.vcf.gz 23:37:08.482 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-3/all_samples.filtered.3.vcf.gz 23:38:02.010 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-4/all_samples.filtered.4.vcf.gz 23:38:17.056 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-5/all_samples.filtered.5.vcf.gz 23:38:54.588 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-6/all_samples.filtered.6.vcf.gz 23:39:06.939 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-7/all_samples.filtered.7.vcf.gz 23:40:01.189 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-8/all_samples.filtered.8.vcf.gz 23:40:51.737 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-9/all_samples.filtered.9.vcf.gz 23:41:41.375 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-10/all_samples.filtered.10.vcf.gz 23:42:33.911 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-11/all_samples.filtered.11.vcf.gz 23:42:46.160 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-12/all_samples.filtered.12.vcf.gz 23:42:48.408 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-13/all_samples.filtered.13.vcf.gz 23:42:53.123 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-14/all_samples.filtered.14.vcf.gz 23:43:22.475 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-15/all_samples.filtered.15.vcf.gz 23:44:16.462 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-16/all_samples.filtered.16.vcf.gz 23:44:23.531 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-17/all_samples.filtered.17.vcf.gz 23:45:12.442 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-18/all_samples.filtered.18.vcf.gz 23:46:01.669 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-19/all_samples.filtered.19.vcf.gz 23:46:51.353 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-20/all_samples.filtered.20.vcf.gz 23:47:38.479 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-21/all_samples.filtered.21.vcf.gz 23:48:26.630 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-22/all_samples.filtered.22.vcf.gz 23:49:18.129 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-23/all_samples.filtered.23.vcf.gz 23:49:33.852 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-24/all_samples.filtered.24.vcf.gz 23:50:08.403 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-25/all_samples.filtered.25.vcf.gz 23:50:57.709 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-26/all_samples.filtered.26.vcf.gz 23:51:39.173 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-27/all_samples.filtered.27.vcf.gz 23:52:24.018 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-28/all_samples.filtered.28.vcf.gz 23:53:09.807 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-29/all_samples.filtered.29.vcf.gz 23:53:52.891 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-30/all_samples.filtered.30.vcf.gz 23:54:33.917 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-31/all_samples.filtered.31.vcf.gz 23:55:18.759 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-32/all_samples.filtered.32.vcf.gz 23:56:00.207 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-33/all_samples.filtered.33.vcf.gz 23:56:37.684 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-34/all_samples.filtered.34.vcf.gz 23:57:09.616 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-35/all_samples.filtered.35.vcf.gz 23:57:50.132 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-36/all_samples.filtered.36.vcf.gz 23:58:37.408 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-37/all_samples.filtered.37.vcf.gz 23:59:12.329 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-38/all_samples.filtered.38.vcf.gz 23:59:47.087 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-39/all_samples.filtered.39.vcf.gz 00:00:20.747 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-40/all_samples.filtered.40.vcf.gz 00:00:58.795 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-41/all_samples.filtered.41.vcf.gz 00:01:34.486 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-42/all_samples.filtered.42.vcf.gz 00:02:07.468 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-43/all_samples.filtered.43.vcf.gz 00:02:39.639 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-44/all_samples.filtered.44.vcf.gz 00:03:10.097 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-45/all_samples.filtered.45.vcf.gz 00:03:39.918 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-46/all_samples.filtered.46.vcf.gz 00:04:16.350 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-47/all_samples.filtered.47.vcf.gz 00:04:48.966 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-48/all_samples.filtered.48.vcf.gz 00:05:19.876 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-49/all_samples.filtered.49.vcf.gz 00:05:51.070 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-50/all_samples.filtered.50.vcf.gz 00:06:21.545 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-51/all_samples.filtered.51.vcf.gz 00:06:54.993 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-52/all_samples.filtered.52.vcf.gz 00:07:27.728 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-53/all_samples.filtered.53.vcf.gz 00:07:59.000 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-54/all_samples.filtered.54.vcf.gz 00:08:34.649 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-55/all_samples.filtered.55.vcf.gz 00:09:10.166 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-56/all_samples.filtered.56.vcf.gz 00:09:44.383 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-57/all_samples.filtered.57.vcf.gz 00:10:14.155 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-58/all_samples.filtered.58.vcf.gz 00:10:48.536 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-59/all_samples.filtered.59.vcf.gz 00:11:19.982 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-60/all_samples.filtered.60.vcf.gz 00:11:34.417 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-61/all_samples.filtered.61.vcf.gz 00:11:48.744 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-62/all_samples.filtered.62.vcf.gz 00:12:21.137 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-63/all_samples.filtered.63.vcf.gz 00:12:52.797 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-64/all_samples.filtered.64.vcf.gz 00:13:35.953 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-65/all_samples.filtered.65.vcf.gz 00:14:12.902 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-66/all_samples.filtered.66.vcf.gz 00:14:52.008 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-67/all_samples.filtered.67.vcf.gz 00:15:28.331 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-68/all_samples.filtered.68.vcf.gz 00:16:01.936 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-69/all_samples.filtered.69.vcf.gz 00:16:28.088 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-70/all_samples.filtered.70.vcf.gz 00:16:32.195 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-71/all_samples.filtered.71.vcf.gz 00:16:42.911 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-72/all_samples.filtered.72.vcf.gz 00:16:43.199 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-73/all_samples.filtered.73.vcf.gz 00:16:43.470 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-74/all_samples.filtered.74.vcf.gz 00:16:43.714 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-75/all_samples.filtered.75.vcf.gz 00:16:44.110 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-76/all_samples.filtered.76.vcf.gz 00:16:44.353 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-77/all_samples.filtered.77.vcf.gz 00:16:44.740 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-78/all_samples.filtered.78.vcf.gz 00:16:45.376 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-79/all_samples.filtered.79.vcf.gz 00:16:46.868 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-80/all_samples.filtered.80.vcf.gz 00:16:47.091 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-81/all_samples.filtered.81.vcf.gz 00:16:53.368 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-82/all_samples.filtered.82.vcf.gz 00:16:54.145 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-83/all_samples.filtered.83.vcf.gz 00:16:54.519 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-84/all_samples.filtered.84.vcf.gz 00:16:54.920 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-85/all_samples.filtered.85.vcf.gz 00:16:55.247 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-86/all_samples.filtered.86.vcf.gz 00:16:58.699 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-87/all_samples.filtered.87.vcf.gz 00:16:59.027 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-88/all_samples.filtered.88.vcf.gz 00:17:01.419 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-89/all_samples.filtered.89.vcf.gz 00:17:01.656 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-90/all_samples.filtered.90.vcf.gz 00:17:04.922 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-91/all_samples.filtered.91.vcf.gz 00:17:05.201 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-92/all_samples.filtered.92.vcf.gz 00:17:05.407 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-93/all_samples.filtered.93.vcf.gz 00:17:06.101 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-94/all_samples.filtered.94.vcf.gz 00:17:09.037 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-95/all_samples.filtered.95.vcf.gz 00:17:11.776 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-96/all_samples.filtered.96.vcf.gz 00:17:11.987 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-97/all_samples.filtered.97.vcf.gz 00:17:13.600 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-98/all_samples.filtered.98.vcf.gz 00:17:14.264 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-99/all_samples.filtered.99.vcf.gz 00:17:15.906 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-100/all_samples.filtered.100.vcf.gz 00:17:20.463 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-101/all_samples.filtered.101.vcf.gz 00:17:21.519 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-102/all_samples.filtered.102.vcf.gz 00:17:35.902 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-103/all_samples.filtered.103.vcf.gz 00:17:41.602 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-104/all_samples.filtered.104.vcf.gz 00:17:45.804 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-105/all_samples.filtered.105.vcf.gz 00:17:46.267 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-106/all_samples.filtered.106.vcf.gz 00:18:14.931 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-107/all_samples.filtered.107.vcf.gz 00:18:20.878 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-108/all_samples.filtered.108.vcf.gz 00:18:23.906 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-109/all_samples.filtered.109.vcf.gz 00:18:28.499 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-110/all_samples.filtered.110.vcf.gz 00:18:34.132 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-111/all_samples.filtered.111.vcf.gz 00:18:44.611 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-112/all_samples.filtered.112.vcf.gz 00:18:59.096 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-113/all_samples.filtered.113.vcf.gz 00:19:42.740 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-114/all_samples.filtered.114.vcf.gz 00:20:25.309 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-115/all_samples.filtered.115.vcf.gz 00:21:13.989 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-116/all_samples.filtered.116.vcf.gz 00:21:55.365 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-117/all_samples.filtered.117.vcf.gz 00:22:30.364 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-118/all_samples.filtered.118.vcf.gz 00:23:12.723 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-119/all_samples.filtered.119.vcf.gz 00:23:45.747 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-120/all_samples.filtered.120.vcf.gz 00:24:24.041 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-121/all_samples.filtered.121.vcf.gz 00:25:00.505 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-122/all_samples.filtered.122.vcf.gz 00:25:33.517 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-123/all_samples.filtered.123.vcf.gz 00:26:06.652 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-124/all_samples.filtered.124.vcf.gz 00:26:39.097 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-125/all_samples.filtered.125.vcf.gz 00:27:13.890 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-126/all_samples.filtered.126.vcf.gz 00:27:47.445 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-127/all_samples.filtered.127.vcf.gz 00:28:24.348 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-128/all_samples.filtered.128.vcf.gz 00:29:05.185 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-129/all_samples.filtered.129.vcf.gz 00:29:40.840 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-130/all_samples.filtered.130.vcf.gz 00:30:12.663 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-131/all_samples.filtered.131.vcf.gz 00:30:43.683 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-132/all_samples.filtered.132.vcf.gz 00:31:13.110 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-133/all_samples.filtered.133.vcf.gz 00:31:42.457 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-134/all_samples.filtered.134.vcf.gz 00:32:14.281 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-135/all_samples.filtered.135.vcf.gz 00:32:44.622 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-136/all_samples.filtered.136.vcf.gz 00:33:13.490 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-137/all_samples.filtered.137.vcf.gz 00:33:53.432 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-138/all_samples.filtered.138.vcf.gz 00:34:39.657 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-139/all_samples.filtered.139.vcf.gz 00:35:25.974 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-140/all_samples.filtered.140.vcf.gz 00:35:37.973 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-141/all_samples.filtered.141.vcf.gz 00:35:43.126 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-142/all_samples.filtered.142.vcf.gz 00:36:06.312 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-143/all_samples.filtered.143.vcf.gz 00:36:45.318 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-144/all_samples.filtered.144.vcf.gz 00:37:23.522 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-145/all_samples.filtered.145.vcf.gz 00:38:02.212 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-146/all_samples.filtered.146.vcf.gz 00:38:35.492 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-147/all_samples.filtered.147.vcf.gz 00:39:06.906 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-148/all_samples.filtered.148.vcf.gz 00:39:40.417 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-149/all_samples.filtered.149.vcf.gz 00:40:14.840 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-150/all_samples.filtered.150.vcf.gz 00:40:45.474 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-151/all_samples.filtered.151.vcf.gz 00:40:52.543 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-152/all_samples.filtered.152.vcf.gz 00:41:31.981 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-153/all_samples.filtered.153.vcf.gz 00:42:15.745 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-154/all_samples.filtered.154.vcf.gz 00:42:59.892 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-155/all_samples.filtered.155.vcf.gz 00:43:41.671 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-156/all_samples.filtered.156.vcf.gz 00:44:18.193 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-157/all_samples.filtered.157.vcf.gz 00:44:37.437 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-158/all_samples.filtered.158.vcf.gz 00:45:02.428 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-159/all_samples.filtered.159.vcf.gz 00:45:41.413 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-160/all_samples.filtered.160.vcf.gz 00:46:16.939 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-161/all_samples.filtered.161.vcf.gz 00:46:55.780 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-162/all_samples.filtered.162.vcf.gz 00:47:32.577 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-163/all_samples.filtered.163.vcf.gz 00:48:14.442 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-164/all_samples.filtered.164.vcf.gz 00:48:55.832 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-165/all_samples.filtered.165.vcf.gz 00:49:00.952 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-166/all_samples.filtered.166.vcf.gz 00:49:05.089 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-167/all_samples.filtered.167.vcf.gz 00:49:44.265 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-168/all_samples.filtered.168.vcf.gz 00:50:30.214 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-169/all_samples.filtered.169.vcf.gz 00:50:34.541 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-170/all_samples.filtered.170.vcf.gz 00:50:58.135 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-171/all_samples.filtered.171.vcf.gz 00:51:12.993 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-172/all_samples.filtered.172.vcf.gz 00:51:49.789 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-173/all_samples.filtered.173.vcf.gz 00:52:31.652 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-174/all_samples.filtered.174.vcf.gz 00:53:21.006 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-175/all_samples.filtered.175.vcf.gz 00:53:55.201 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-176/all_samples.filtered.176.vcf.gz 00:54:32.141 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-177/all_samples.filtered.177.vcf.gz 00:54:38.030 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-178/all_samples.filtered.178.vcf.gz 00:55:13.775 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-179/all_samples.filtered.179.vcf.gz 00:55:53.412 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-180/all_samples.filtered.180.vcf.gz 00:56:18.588 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-181/all_samples.filtered.181.vcf.gz 00:56:38.811 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-182/all_samples.filtered.182.vcf.gz 00:57:23.191 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-183/all_samples.filtered.183.vcf.gz 00:58:12.942 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-184/all_samples.filtered.184.vcf.gz 00:59:03.356 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-185/all_samples.filtered.185.vcf.gz 00:59:52.672 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-186/all_samples.filtered.186.vcf.gz 01:00:23.931 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-187/all_samples.filtered.187.vcf.gz 01:00:41.449 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-188/all_samples.filtered.188.vcf.gz 01:00:55.236 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-189/all_samples.filtered.189.vcf.gz 01:00:56.756 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-190/all_samples.filtered.190.vcf.gz 01:01:31.321 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-191/all_samples.filtered.191.vcf.gz 01:02:12.851 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-192/all_samples.filtered.192.vcf.gz 01:03:00.109 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-193/all_samples.filtered.193.vcf.gz 01:03:48.202 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-194/all_samples.filtered.194.vcf.gz 01:04:33.109 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-195/all_samples.filtered.195.vcf.gz 01:05:25.775 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-196/all_samples.filtered.196.vcf.gz 01:06:15.314 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-197/all_samples.filtered.197.vcf.gz 01:07:07.945 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-198/all_samples.filtered.198.vcf.gz 01:07:47.626 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-199/all_samples.filtered.199.vcf.gz 01:08:25.487 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-200/all_samples.filtered.200.vcf.gz 01:09:08.749 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-201/all_samples.filtered.201.vcf.gz 01:09:49.686 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-202/all_samples.filtered.202.vcf.gz 01:10:26.231 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-203/all_samples.filtered.203.vcf.gz 01:11:09.259 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-204/all_samples.filtered.204.vcf.gz 01:11:58.778 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-205/all_samples.filtered.205.vcf.gz 01:12:40.554 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-206/all_samples.filtered.206.vcf.gz 01:13:25.467 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-207/all_samples.filtered.207.vcf.gz 01:14:07.728 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-208/all_samples.filtered.208.vcf.gz 01:14:59.291 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-209/all_samples.filtered.209.vcf.gz 01:15:48.701 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-210/all_samples.filtered.210.vcf.gz 01:16:37.525 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-211/all_samples.filtered.211.vcf.gz 01:17:17.350 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-212/all_samples.filtered.212.vcf.gz 01:17:56.774 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-213/all_samples.filtered.213.vcf.gz 01:18:45.054 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-214/all_samples.filtered.214.vcf.gz 01:19:21.005 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-215/all_samples.filtered.215.vcf.gz 01:20:03.366 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-216/all_samples.filtered.216.vcf.gz 01:20:55.230 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-217/all_samples.filtered.217.vcf.gz 01:20:57.252 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-218/all_samples.filtered.218.vcf.gz 01:21:47.961 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-219/all_samples.filtered.219.vcf.gz 01:21:52.175 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-220/all_samples.filtered.220.vcf.gz 01:22:01.562 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-221/all_samples.filtered.221.vcf.gz 01:22:11.299 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-222/all_samples.filtered.222.vcf.gz 01:22:15.512 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-223/all_samples.filtered.223.vcf.gz 01:22:16.542 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-224/all_samples.filtered.224.vcf.gz 01:22:19.403 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-225/all_samples.filtered.225.vcf.gz 01:22:21.365 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-226/all_samples.filtered.226.vcf.gz 01:22:23.238 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-227/all_samples.filtered.227.vcf.gz 01:22:26.668 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-228/all_samples.filtered.228.vcf.gz 01:22:31.746 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-229/all_samples.filtered.229.vcf.gz 01:22:32.120 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-230/all_samples.filtered.230.vcf.gz 01:22:33.253 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-231/all_samples.filtered.231.vcf.gz 01:22:33.583 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-232/all_samples.filtered.232.vcf.gz 01:22:33.764 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-233/all_samples.filtered.233.vcf.gz 01:22:34.014 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-234/all_samples.filtered.234.vcf.gz 01:22:34.261 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-235/all_samples.filtered.235.vcf.gz 01:22:55.233 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-236/all_samples.filtered.236.vcf.gz 01:23:43.342 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-237/all_samples.filtered.237.vcf.gz 01:24:29.760 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-238/all_samples.filtered.238.vcf.gz 01:25:21.132 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-239/all_samples.filtered.239.vcf.gz 01:26:00.764 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-240/all_samples.filtered.240.vcf.gz 01:26:45.348 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-241/all_samples.filtered.241.vcf.gz 01:27:30.807 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-242/attempt-2/all_samples.filtered.242.vcf.gz 01:28:10.716 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-243/all_samples.filtered.243.vcf.gz 01:28:19.861 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-244/all_samples.filtered.244.vcf.gz 01:29:08.139 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-245/all_samples.filtered.245.vcf.gz 01:29:56.577 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-246/all_samples.filtered.246.vcf.gz 01:30:33.380 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-247/all_samples.filtered.247.vcf.gz 01:31:15.148 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-248/all_samples.filtered.248.vcf.gz 01:32:02.380 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-249/all_samples.filtered.249.vcf.gz 01:32:57.996 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-250/all_samples.filtered.250.vcf.gz 01:33:37.410 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-251/all_samples.filtered.251.vcf.gz 01:34:16.439 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-252/all_samples.filtered.252.vcf.gz 01:35:08.518 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-253/all_samples.filtered.253.vcf.gz 01:36:00.451 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-254/all_samples.filtered.254.vcf.gz 01:36:48.178 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-255/all_samples.filtered.255.vcf.gz 01:36:49.010 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-256/all_samples.filtered.256.vcf.gz 01:36:49.194 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-257/all_samples.filtered.257.vcf.gz 01:36:49.407 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-258/all_samples.filtered.258.vcf.gz 01:36:49.646 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-259/all_samples.filtered.259.vcf.gz 01:36:51.967 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-260/all_samples.filtered.260.vcf.gz 01:37:36.576 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-261/all_samples.filtered.261.vcf.gz 01:38:18.986 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-262/all_samples.filtered.262.vcf.gz 01:38:55.936 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-263/all_samples.filtered.263.vcf.gz 01:39:33.032 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-264/all_samples.filtered.264.vcf.gz 01:40:08.948 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-265/all_samples.filtered.265.vcf.gz 01:40:43.027 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-266/all_samples.filtered.266.vcf.gz 01:41:15.051 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-267/all_samples.filtered.267.vcf.gz 01:41:51.473 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-268/all_samples.filtered.268.vcf.gz 01:41:54.704 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-269/all_samples.filtered.269.vcf.gz 01:42:31.073 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-270/all_samples.filtered.270.vcf.gz 01:43:10.966 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-271/all_samples.filtered.271.vcf.gz 01:43:46.636 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-272/all_samples.filtered.272.vcf.gz 01:44:19.280 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-273/all_samples.filtered.273.vcf.gz 01:44:57.918 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-274/all_samples.filtered.274.vcf.gz 01:45:38.512 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-275/all_samples.filtered.275.vcf.gz 01:46:12.563 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-276/all_samples.filtered.276.vcf.gz 01:46:46.702 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-277/all_samples.filtered.277.vcf.gz 01:47:22.688 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-278/all_samples.filtered.278.vcf.gz 01:47:56.208 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-279/all_samples.filtered.279.vcf.gz 01:48:33.855 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-280/all_samples.filtered.280.vcf.gz 01:49:11.646 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-281/all_samples.filtered.281.vcf.gz 01:49:48.138 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-282/all_samples.filtered.282.vcf.gz 01:50:22.582 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-283/all_samples.filtered.283.vcf.gz 01:50:54.992 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-284/all_samples.filtered.284.vcf.gz 01:51:26.135 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-285/all_samples.filtered.285.vcf.gz 01:51:57.770 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-286/all_samples.filtered.286.vcf.gz 01:52:27.617 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-287/all_samples.filtered.287.vcf.gz 01:52:58.207 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-288/all_samples.filtered.288.vcf.gz 01:53:28.437 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-289/all_samples.filtered.289.vcf.gz 01:54:01.253 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-290/all_samples.filtered.290.vcf.gz 01:54:30.753 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-291/all_samples.filtered.291.vcf.gz 01:55:02.057 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-292/all_samples.filtered.292.vcf.gz 01:55:36.655 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-293/all_samples.filtered.293.vcf.gz 01:56:08.636 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-294/all_samples.filtered.294.vcf.gz 01:56:44.690 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-295/all_samples.filtered.295.vcf.gz 01:57:26.500 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-296/all_samples.filtered.296.vcf.gz 01:58:01.171 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-297/all_samples.filtered.297.vcf.gz 01:58:37.910 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-298/all_samples.filtered.298.vcf.gz 01:59:11.536 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-299/all_samples.filtered.299.vcf.gz 01:59:42.442 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-300/all_samples.filtered.300.vcf.gz 02:00:14.294 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-301/all_samples.filtered.301.vcf.gz 02:00:52.760 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-302/all_samples.filtered.302.vcf.gz 02:01:39.256 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-303/all_samples.filtered.303.vcf.gz 02:02:29.843 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-304/all_samples.filtered.304.vcf.gz 02:03:06.544 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-305/all_samples.filtered.305.vcf.gz 02:03:48.485 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-306/all_samples.filtered.306.vcf.gz 02:04:25.691 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-307/all_samples.filtered.307.vcf.gz 02:05:06.821 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-308/all_samples.filtered.308.vcf.gz 02:05:48.684 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-309/all_samples.filtered.309.vcf.gz 02:06:42.377 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-310/all_samples.filtered.310.vcf.gz 02:06:59.751 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-311/all_samples.filtered.311.vcf.gz 02:07:33.367 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-312/all_samples.filtered.312.vcf.gz 02:08:28.646 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-313/all_samples.filtered.313.vcf.gz 02:09:24.184 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-314/all_samples.filtered.314.vcf.gz 02:09:31.376 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-315/all_samples.filtered.315.vcf.gz 02:10:01.002 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-316/all_samples.filtered.316.vcf.gz 02:10:26.470 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-317/all_samples.filtered.317.vcf.gz 02:11:12.063 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-318/all_samples.filtered.318.vcf.gz 02:11:13.524 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-319/all_samples.filtered.319.vcf.gz 02:11:24.878 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-320/all_samples.filtered.320.vcf.gz 02:11:46.534 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-321/all_samples.filtered.321.vcf.gz 02:11:47.318 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-322/all_samples.filtered.322.vcf.gz 02:11:47.528 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-323/all_samples.filtered.323.vcf.gz 02:12:06.487 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-324/all_samples.filtered.324.vcf.gz 02:12:51.086 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-325/all_samples.filtered.325.vcf.gz 02:13:36.673 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-326/all_samples.filtered.326.vcf.gz 02:14:20.225 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-327/all_samples.filtered.327.vcf.gz 02:14:46.826 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-328/all_samples.filtered.328.vcf.gz 02:15:13.717 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-329/all_samples.filtered.329.vcf.gz 02:16:04.818 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-330/all_samples.filtered.330.vcf.gz 02:17:11.744 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-331/all_samples.filtered.331.vcf.gz 02:17:57.573 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-332/all_samples.filtered.332.vcf.gz 02:18:32.914 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-333/all_samples.filtered.333.vcf.gz 02:19:12.465 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-334/all_samples.filtered.334.vcf.gz 02:19:52.214 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-335/all_samples.filtered.335.vcf.gz 02:20:34.122 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-336/all_samples.filtered.336.vcf.gz 02:21:14.712 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-337/all_samples.filtered.337.vcf.gz 02:21:52.928 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-338/all_samples.filtered.338.vcf.gz 02:22:32.118 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-339/all_samples.filtered.339.vcf.gz 02:23:19.946 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-340/all_samples.filtered.340.vcf.gz 02:23:58.248 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-341/all_samples.filtered.341.vcf.gz 02:24:35.960 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-342/all_samples.filtered.342.vcf.gz 02:25:20.788 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-343/all_samples.filtered.343.vcf.gz 02:26:03.961 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-344/all_samples.filtered.344.vcf.gz 02:26:51.270 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-345/all_samples.filtered.345.vcf.gz 02:27:36.550 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-346/all_samples.filtered.346.vcf.gz 02:28:26.440 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-347/all_samples.filtered.347.vcf.gz 02:29:23.314 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-348/all_samples.filtered.348.vcf.gz 02:30:15.006 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-349/all_samples.filtered.349.vcf.gz 02:31:08.701 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-350/all_samples.filtered.350.vcf.gz 02:31:54.099 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-351/all_samples.filtered.351.vcf.gz 02:32:38.992 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-352/all_samples.filtered.352.vcf.gz 02:33:25.447 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-353/all_samples.filtered.353.vcf.gz 02:34:09.127 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-354/all_samples.filtered.354.vcf.gz 02:34:50.692 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-355/all_samples.filtered.355.vcf.gz 02:35:33.610 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-356/attempt-2/all_samples.filtered.356.vcf.gz 02:35:39.368 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-357/all_samples.filtered.357.vcf.gz 02:36:18.330 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-358/all_samples.filtered.358.vcf.gz 02:36:58.808 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-359/all_samples.filtered.359.vcf.gz 02:37:40.338 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-360/all_samples.filtered.360.vcf.gz 02:38:26.378 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-361/all_samples.filtered.361.vcf.gz 02:38:58.249 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-362/all_samples.filtered.362.vcf.gz 02:38:58.607 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-363/all_samples.filtered.363.vcf.gz 02:38:58.826 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-364/all_samples.filtered.364.vcf.gz 02:38:59.067 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-365/all_samples.filtered.365.vcf.gz 02:39:00.785 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-366/all_samples.filtered.366.vcf.gz 02:39:01.445 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-367/all_samples.filtered.367.vcf.gz 02:39:02.372 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-368/attempt-2/all_samples.filtered.368.vcf.gz 02:39:03.074 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-369/all_samples.filtered.369.vcf.gz 02:39:04.229 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-370/all_samples.filtered.370.vcf.gz 02:39:04.442 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-371/all_samples.filtered.371.vcf.gz 02:39:10.429 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-372/all_samples.filtered.372.vcf.gz 02:39:46.620 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-373/all_samples.filtered.373.vcf.gz 02:40:21.119 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-374/all_samples.filtered.374.vcf.gz 02:40:53.893 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-375/all_samples.filtered.375.vcf.gz 02:41:27.110 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-376/all_samples.filtered.376.vcf.gz 02:42:03.028 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-377/all_samples.filtered.377.vcf.gz 02:42:38.981 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-378/all_samples.filtered.378.vcf.gz 02:43:13.995 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-379/all_samples.filtered.379.vcf.gz 02:43:16.349 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-380/all_samples.filtered.380.vcf.gz 02:43:52.630 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-381/all_samples.filtered.381.vcf.gz 02:44:27.035 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-382/all_samples.filtered.382.vcf.gz 02:45:04.563 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-383/all_samples.filtered.383.vcf.gz 02:45:44.660 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-384/all_samples.filtered.384.vcf.gz 02:46:19.266 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-385/all_samples.filtered.385.vcf.gz 02:46:51.382 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-386/all_samples.filtered.386.vcf.gz 02:47:24.756 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-387/all_samples.filtered.387.vcf.gz 02:47:59.401 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-388/all_samples.filtered.388.vcf.gz 02:48:31.424 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-389/all_samples.filtered.389.vcf.gz 02:49:06.712 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-390/all_samples.filtered.390.vcf.gz 02:49:37.669 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-391/all_samples.filtered.391.vcf.gz 02:50:09.411 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-392/all_samples.filtered.392.vcf.gz 02:50:45.097 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-393/all_samples.filtered.393.vcf.gz 02:51:19.021 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-394/all_samples.filtered.394.vcf.gz 02:51:58.779 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-395/all_samples.filtered.395.vcf.gz 02:52:47.607 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-396/all_samples.filtered.396.vcf.gz 02:53:34.110 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-397/all_samples.filtered.397.vcf.gz 02:54:20.928 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-398/all_samples.filtered.398.vcf.gz 02:54:54.485 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-399/all_samples.filtered.399.vcf.gz 02:55:35.194 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-400/all_samples.filtered.400.vcf.gz 02:56:15.442 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-401/all_samples.filtered.401.vcf.gz 02:56:54.954 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-402/all_samples.filtered.402.vcf.gz 02:57:32.472 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-403/all_samples.filtered.403.vcf.gz 02:58:12.884 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-404/all_samples.filtered.404.vcf.gz 02:58:46.072 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-405/all_samples.filtered.405.vcf.gz 02:59:18.737 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-406/all_samples.filtered.406.vcf.gz 02:59:52.342 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-407/all_samples.filtered.407.vcf.gz 03:00:31.786 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-408/all_samples.filtered.408.vcf.gz 03:01:06.947 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-409/all_samples.filtered.409.vcf.gz 03:01:43.568 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-410/all_samples.filtered.410.vcf.gz 03:02:22.537 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-411/all_samples.filtered.411.vcf.gz 03:03:00.296 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-412/all_samples.filtered.412.vcf.gz 03:03:37.122 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-413/all_samples.filtered.413.vcf.gz 03:04:13.453 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-414/all_samples.filtered.414.vcf.gz 03:04:47.424 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-415/all_samples.filtered.415.vcf.gz 03:05:21.650 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-416/all_samples.filtered.416.vcf.gz 03:05:55.317 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-417/all_samples.filtered.417.vcf.gz 03:06:38.241 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-418/all_samples.filtered.418.vcf.gz 03:07:18.661 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-419/all_samples.filtered.419.vcf.gz 03:07:54.280 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-420/all_samples.filtered.420.vcf.gz 03:08:33.968 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-421/all_samples.filtered.421.vcf.gz 03:09:10.493 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-422/all_samples.filtered.422.vcf.gz 03:09:48.242 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-423/all_samples.filtered.423.vcf.gz 03:10:33.011 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-424/all_samples.filtered.424.vcf.gz 03:11:25.790 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-425/all_samples.filtered.425.vcf.gz 03:12:14.840 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-426/all_samples.filtered.426.vcf.gz 03:12:55.681 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-427/all_samples.filtered.427.vcf.gz 03:13:34.965 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-428/all_samples.filtered.428.vcf.gz 03:14:15.569 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-429/all_samples.filtered.429.vcf.gz 03:14:25.254 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-430/all_samples.filtered.430.vcf.gz 03:15:18.043 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-431/all_samples.filtered.431.vcf.gz 03:16:18.694 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-432/all_samples.filtered.432.vcf.gz 03:16:24.439 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-433/all_samples.filtered.433.vcf.gz 03:17:08.418 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-434/all_samples.filtered.434.vcf.gz 03:17:22.365 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-435/all_samples.filtered.435.vcf.gz 03:18:27.188 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-436/all_samples.filtered.436.vcf.gz 03:19:26.583 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-437/all_samples.filtered.437.vcf.gz 03:20:36.831 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-438/all_samples.filtered.438.vcf.gz 03:21:04.707 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-439/all_samples.filtered.439.vcf.gz 03:21:17.355 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-440/all_samples.filtered.440.vcf.gz 03:21:40.546 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-441/all_samples.filtered.441.vcf.gz 03:22:27.935 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-442/all_samples.filtered.442.vcf.gz 03:23:10.788 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-443/all_samples.filtered.443.vcf.gz 03:23:53.378 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-444/all_samples.filtered.444.vcf.gz 03:24:36.455 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-445/all_samples.filtered.445.vcf.gz 03:25:14.785 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-446/all_samples.filtered.446.vcf.gz 03:25:55.209 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-447/all_samples.filtered.447.vcf.gz 03:26:36.960 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-448/all_samples.filtered.448.vcf.gz 03:27:26.852 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-449/all_samples.filtered.449.vcf.gz 03:28:06.072 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-450/all_samples.filtered.450.vcf.gz 03:28:43.355 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-451/all_samples.filtered.451.vcf.gz 03:29:07.299 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-452/all_samples.filtered.452.vcf.gz 03:29:21.132 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-453/all_samples.filtered.453.vcf.gz 03:29:26.192 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-454/attempt-2/all_samples.filtered.454.vcf.gz 03:29:57.994 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-455/all_samples.filtered.455.vcf.gz 03:30:34.867 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-456/all_samples.filtered.456.vcf.gz 03:31:17.273 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-457/all_samples.filtered.457.vcf.gz 03:31:57.757 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-458/all_samples.filtered.458.vcf.gz 03:32:10.332 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-459/all_samples.filtered.459.vcf.gz 03:32:55.196 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-460/all_samples.filtered.460.vcf.gz 03:33:31.335 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-461/all_samples.filtered.461.vcf.gz 03:34:06.417 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-462/all_samples.filtered.462.vcf.gz 03:34:43.705 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-463/all_samples.filtered.463.vcf.gz 03:34:47.259 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-464/all_samples.filtered.464.vcf.gz 03:34:47.644 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-465/all_samples.filtered.465.vcf.gz 03:34:50.141 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-466/all_samples.filtered.466.vcf.gz 03:34:52.039 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-467/all_samples.filtered.467.vcf.gz 03:34:52.779 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-468/all_samples.filtered.468.vcf.gz 03:34:54.959 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-469/all_samples.filtered.469.vcf.gz 03:34:55.409 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-470/all_samples.filtered.470.vcf.gz 03:34:56.020 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-471/all_samples.filtered.471.vcf.gz 03:34:56.880 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-472/all_samples.filtered.472.vcf.gz 03:34:57.796 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-473/all_samples.filtered.473.vcf.gz 03:34:58.872 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-474/all_samples.filtered.474.vcf.gz 03:35:02.883 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-475/all_samples.filtered.475.vcf.gz 03:35:35.637 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-476/all_samples.filtered.476.vcf.gz 03:36:20.353 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-477/all_samples.filtered.477.vcf.gz 03:37:06.608 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-478/all_samples.filtered.478.vcf.gz 03:37:34.050 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-479/all_samples.filtered.479.vcf.gz 03:37:46.390 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-480/all_samples.filtered.480.vcf.gz 03:38:24.359 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-481/all_samples.filtered.481.vcf.gz 03:39:01.944 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-482/all_samples.filtered.482.vcf.gz 03:39:39.893 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-483/all_samples.filtered.483.vcf.gz 03:40:16.877 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-484/all_samples.filtered.484.vcf.gz 03:40:56.950 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-485/all_samples.filtered.485.vcf.gz 03:41:35.351 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-486/all_samples.filtered.486.vcf.gz 03:42:12.764 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-487/all_samples.filtered.487.vcf.gz 03:42:25.932 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-488/all_samples.filtered.488.vcf.gz 03:42:54.666 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-489/all_samples.filtered.489.vcf.gz 03:43:38.754 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-490/all_samples.filtered.490.vcf.gz 03:44:15.799 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-491/all_samples.filtered.491.vcf.gz 03:44:52.549 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-492/all_samples.filtered.492.vcf.gz 03:45:36.913 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-493/all_samples.filtered.493.vcf.gz 03:46:15.892 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-494/all_samples.filtered.494.vcf.gz 03:46:58.089 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-495/all_samples.filtered.495.vcf.gz 03:47:37.673 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-496/all_samples.filtered.496.vcf.gz 03:48:13.436 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-497/all_samples.filtered.497.vcf.gz 03:48:49.329 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-498/all_samples.filtered.498.vcf.gz 03:49:23.702 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-499/all_samples.filtered.499.vcf.gz 03:49:55.056 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-500/all_samples.filtered.500.vcf.gz 03:50:29.283 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-501/all_samples.filtered.501.vcf.gz 03:51:00.923 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-502/all_samples.filtered.502.vcf.gz 03:51:31.666 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-503/all_samples.filtered.503.vcf.gz 03:52:01.389 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-504/all_samples.filtered.504.vcf.gz 03:52:34.145 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-505/all_samples.filtered.505.vcf.gz 03:53:10.087 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-506/all_samples.filtered.506.vcf.gz 03:53:40.331 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-507/all_samples.filtered.507.vcf.gz 03:54:12.368 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-508/all_samples.filtered.508.vcf.gz 03:54:43.577 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-509/all_samples.filtered.509.vcf.gz 03:55:18.924 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-510/all_samples.filtered.510.vcf.gz 03:55:52.204 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-511/all_samples.filtered.511.vcf.gz 03:56:25.257 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-512/all_samples.filtered.512.vcf.gz 03:56:58.091 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-513/all_samples.filtered.513.vcf.gz 03:57:28.599 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-514/all_samples.filtered.514.vcf.gz 03:58:02.110 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-515/all_samples.filtered.515.vcf.gz 03:58:32.636 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-516/all_samples.filtered.516.vcf.gz 03:59:05.965 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-517/all_samples.filtered.517.vcf.gz 03:59:37.099 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-518/all_samples.filtered.518.vcf.gz 04:00:07.859 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-519/all_samples.filtered.519.vcf.gz 04:00:42.462 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-520/all_samples.filtered.520.vcf.gz 04:01:18.949 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-521/all_samples.filtered.521.vcf.gz 04:01:50.430 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-522/all_samples.filtered.522.vcf.gz 04:02:22.960 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-523/all_samples.filtered.523.vcf.gz 04:02:54.985 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-524/all_samples.filtered.524.vcf.gz 04:03:27.249 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-525/all_samples.filtered.525.vcf.gz 04:03:59.740 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-526/all_samples.filtered.526.vcf.gz 04:04:34.654 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-527/all_samples.filtered.527.vcf.gz 04:05:07.113 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-528/all_samples.filtered.528.vcf.gz 04:05:37.724 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-529/all_samples.filtered.529.vcf.gz 04:06:10.622 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-530/all_samples.filtered.530.vcf.gz 04:06:42.432 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-531/all_samples.filtered.531.vcf.gz 04:07:13.667 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-532/all_samples.filtered.532.vcf.gz 04:07:48.631 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-533/all_samples.filtered.533.vcf.gz 04:08:19.656 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-534/all_samples.filtered.534.vcf.gz 04:08:54.190 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-535/all_samples.filtered.535.vcf.gz 04:09:25.895 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-536/all_samples.filtered.536.vcf.gz 04:09:57.516 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-537/all_samples.filtered.537.vcf.gz 04:10:28.444 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-538/all_samples.filtered.538.vcf.gz 04:11:01.311 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-539/all_samples.filtered.539.vcf.gz 04:11:34.424 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-540/all_samples.filtered.540.vcf.gz 04:12:08.549 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-541/all_samples.filtered.541.vcf.gz 04:12:50.896 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-542/all_samples.filtered.542.vcf.gz 04:13:33.189 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-543/all_samples.filtered.543.vcf.gz 04:14:12.683 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-544/all_samples.filtered.544.vcf.gz 04:14:34.665 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-545/all_samples.filtered.545.vcf.gz 04:14:42.091 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-546/all_samples.filtered.546.vcf.gz 04:14:42.371 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-547/all_samples.filtered.547.vcf.gz 04:14:49.761 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-548/all_samples.filtered.548.vcf.gz 04:14:54.113 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-549/all_samples.filtered.549.vcf.gz 04:15:53.009 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-550/all_samples.filtered.550.vcf.gz 04:16:39.745 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-551/all_samples.filtered.551.vcf.gz 04:17:21.196 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-552/all_samples.filtered.552.vcf.gz 04:18:01.379 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-553/all_samples.filtered.553.vcf.gz 04:18:39.496 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-554/all_samples.filtered.554.vcf.gz 04:19:15.989 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-555/all_samples.filtered.555.vcf.gz 04:19:49.945 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-556/all_samples.filtered.556.vcf.gz 04:20:25.615 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-557/all_samples.filtered.557.vcf.gz 04:20:49.521 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-558/all_samples.filtered.558.vcf.gz 04:21:07.399 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-559/all_samples.filtered.559.vcf.gz 04:21:37.054 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-560/all_samples.filtered.560.vcf.gz 04:22:08.288 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-561/all_samples.filtered.561.vcf.gz 04:22:39.661 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-562/all_samples.filtered.562.vcf.gz 04:23:11.884 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-563/all_samples.filtered.563.vcf.gz 04:23:41.993 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-564/all_samples.filtered.564.vcf.gz 04:24:13.676 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-565/all_samples.filtered.565.vcf.gz 04:24:55.279 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-566/all_samples.filtered.566.vcf.gz 04:25:31.686 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-567/all_samples.filtered.567.vcf.gz 04:26:06.147 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-568/all_samples.filtered.568.vcf.gz 04:26:42.743 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-569/all_samples.filtered.569.vcf.gz 04:27:17.322 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-570/all_samples.filtered.570.vcf.gz 04:27:49.165 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-571/all_samples.filtered.571.vcf.gz 04:28:21.941 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-572/all_samples.filtered.572.vcf.gz 04:28:43.823 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-573/all_samples.filtered.573.vcf.gz 04:29:00.110 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-574/all_samples.filtered.574.vcf.gz 04:29:30.340 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-575/all_samples.filtered.575.vcf.gz 04:30:03.935 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-576/all_samples.filtered.576.vcf.gz 04:30:41.790 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-577/all_samples.filtered.577.vcf.gz 04:31:19.310 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-578/all_samples.filtered.578.vcf.gz 04:31:49.582 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-579/all_samples.filtered.579.vcf.gz 04:32:24.517 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-580/all_samples.filtered.580.vcf.gz 04:32:55.649 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-581/all_samples.filtered.581.vcf.gz 04:33:29.887 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-582/all_samples.filtered.582.vcf.gz 04:34:07.671 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-583/all_samples.filtered.583.vcf.gz 04:34:46.764 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-584/all_samples.filtered.584.vcf.gz 04:35:22.646 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-585/all_samples.filtered.585.vcf.gz 04:36:01.993 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-586/all_samples.filtered.586.vcf.gz 04:36:38.890 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-587/all_samples.filtered.587.vcf.gz 04:37:16.609 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-588/all_samples.filtered.588.vcf.gz 04:37:56.124 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-589/all_samples.filtered.589.vcf.gz 04:38:29.993 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-590/all_samples.filtered.590.vcf.gz 04:39:00.650 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-591/all_samples.filtered.591.vcf.gz 04:39:31.543 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-592/all_samples.filtered.592.vcf.gz 04:39:59.073 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-593/all_samples.filtered.593.vcf.gz 04:40:30.234 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-594/all_samples.filtered.594.vcf.gz 04:40:38.171 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-595/all_samples.filtered.595.vcf.gz 04:40:58.906 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-596/all_samples.filtered.596.vcf.gz 04:41:28.385 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-597/all_samples.filtered.597.vcf.gz 04:42:01.765 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-598/all_samples.filtered.598.vcf.gz 04:42:35.207 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-599/all_samples.filtered.599.vcf.gz 04:43:06.371 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-600/all_samples.filtered.600.vcf.gz 04:43:37.589 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-601/all_samples.filtered.601.vcf.gz 04:44:08.015 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-602/all_samples.filtered.602.vcf.gz 04:44:39.679 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-603/all_samples.filtered.603.vcf.gz 04:45:13.337 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-604/all_samples.filtered.604.vcf.gz 04:45:48.896 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-605/all_samples.filtered.605.vcf.gz 04:46:26.288 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-606/all_samples.filtered.606.vcf.gz 04:47:00.735 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-607/all_samples.filtered.607.vcf.gz 04:47:34.275 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-608/all_samples.filtered.608.vcf.gz 04:48:08.116 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-609/all_samples.filtered.609.vcf.gz 04:48:39.416 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-610/all_samples.filtered.610.vcf.gz 04:49:12.163 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-611/all_samples.filtered.611.vcf.gz 04:49:46.423 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-612/all_samples.filtered.612.vcf.gz 04:50:20.576 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-613/all_samples.filtered.613.vcf.gz 04:50:51.008 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-614/all_samples.filtered.614.vcf.gz 04:51:26.679 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-615/all_samples.filtered.615.vcf.gz 04:52:11.133 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-616/all_samples.filtered.616.vcf.gz 04:52:50.627 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-617/all_samples.filtered.617.vcf.gz 04:53:30.963 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-618/all_samples.filtered.618.vcf.gz 04:53:48.513 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-619/all_samples.filtered.619.vcf.gz 04:54:17.871 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-620/all_samples.filtered.620.vcf.gz 04:55:00.654 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-621/all_samples.filtered.621.vcf.gz 04:55:38.673 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-622/all_samples.filtered.622.vcf.gz 04:56:13.848 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-623/all_samples.filtered.623.vcf.gz 04:56:46.538 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-624/all_samples.filtered.624.vcf.gz 04:57:31.062 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-625/all_samples.filtered.625.vcf.gz 04:58:09.465 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-626/all_samples.filtered.626.vcf.gz 04:58:47.952 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-627/all_samples.filtered.627.vcf.gz 04:58:59.188 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-628/all_samples.filtered.628.vcf.gz 04:59:21.697 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-629/all_samples.filtered.629.vcf.gz 05:00:00.060 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-630/all_samples.filtered.630.vcf.gz 05:00:37.998 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-631/all_samples.filtered.631.vcf.gz 05:01:09.497 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-632/all_samples.filtered.632.vcf.gz 05:01:41.274 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-633/all_samples.filtered.633.vcf.gz 05:02:14.927 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-634/all_samples.filtered.634.vcf.gz 05:02:58.064 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-635/all_samples.filtered.635.vcf.gz 05:03:37.419 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-636/all_samples.filtered.636.vcf.gz 05:04:25.218 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-637/all_samples.filtered.637.vcf.gz 05:05:09.287 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-638/all_samples.filtered.638.vcf.gz 05:06:02.193 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-639/all_samples.filtered.639.vcf.gz 05:06:53.298 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-640/all_samples.filtered.640.vcf.gz 05:07:40.220 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-641/all_samples.filtered.641.vcf.gz 05:07:42.403 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-642/all_samples.filtered.642.vcf.gz 05:08:28.003 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-643/all_samples.filtered.643.vcf.gz 05:09:13.773 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-644/all_samples.filtered.644.vcf.gz 05:09:54.270 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-645/all_samples.filtered.645.vcf.gz 05:10:38.112 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-646/all_samples.filtered.646.vcf.gz 05:11:14.232 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-647/all_samples.filtered.647.vcf.gz 05:11:54.307 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-648/all_samples.filtered.648.vcf.gz 05:12:33.953 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-649/all_samples.filtered.649.vcf.gz 05:13:16.716 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-650/all_samples.filtered.650.vcf.gz 05:13:57.538 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-651/all_samples.filtered.651.vcf.gz 05:14:35.586 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-652/all_samples.filtered.652.vcf.gz 05:15:14.072 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-653/all_samples.filtered.653.vcf.gz 05:15:49.890 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-654/all_samples.filtered.654.vcf.gz 05:16:27.094 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-655/all_samples.filtered.655.vcf.gz 05:17:04.716 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-656/all_samples.filtered.656.vcf.gz 05:17:51.325 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-657/all_samples.filtered.657.vcf.gz 05:18:37.630 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-658/all_samples.filtered.658.vcf.gz 05:18:40.628 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-659/all_samples.filtered.659.vcf.gz 05:18:40.890 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-660/all_samples.filtered.660.vcf.gz 05:18:42.387 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-661/all_samples.filtered.661.vcf.gz 05:18:42.767 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-662/all_samples.filtered.662.vcf.gz 05:18:42.922 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-663/all_samples.filtered.663.vcf.gz 05:18:43.096 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-664/all_samples.filtered.664.vcf.gz 05:18:43.274 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-665/all_samples.filtered.665.vcf.gz 05:18:43.439 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-666/all_samples.filtered.666.vcf.gz 05:18:43.807 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-667/all_samples.filtered.667.vcf.gz 05:18:44.001 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-668/all_samples.filtered.668.vcf.gz 05:18:44.296 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-669/all_samples.filtered.669.vcf.gz 05:18:44.515 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-670/all_samples.filtered.670.vcf.gz 05:18:44.676 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-671/all_samples.filtered.671.vcf.gz 05:18:45.027 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-672/all_samples.filtered.672.vcf.gz 05:18:45.930 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-673/all_samples.filtered.673.vcf.gz 05:18:46.473 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-674/all_samples.filtered.674.vcf.gz 05:18:46.785 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-675/all_samples.filtered.675.vcf.gz 05:18:48.239 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-676/all_samples.filtered.676.vcf.gz 05:18:48.432 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-677/all_samples.filtered.677.vcf.gz 05:18:48.676 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-678/all_samples.filtered.678.vcf.gz 05:18:48.901 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-679/all_samples.filtered.679.vcf.gz 05:18:49.144 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-680/all_samples.filtered.680.vcf.gz 05:18:49.681 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-681/all_samples.filtered.681.vcf.gz 05:18:49.915 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-682/all_samples.filtered.682.vcf.gz 05:18:51.093 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-683/all_samples.filtered.683.vcf.gz 05:18:51.301 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-684/all_samples.filtered.684.vcf.gz 05:18:51.517 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-685/all_samples.filtered.685.vcf.gz 05:18:57.676 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-686/all_samples.filtered.686.vcf.gz 05:19:50.034 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-687/all_samples.filtered.687.vcf.gz 05:20:39.558 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-688/all_samples.filtered.688.vcf.gz 05:21:21.869 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-689/all_samples.filtered.689.vcf.gz 05:22:05.560 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-690/all_samples.filtered.690.vcf.gz 05:22:55.424 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-691/all_samples.filtered.691.vcf.gz 05:23:40.902 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-692/all_samples.filtered.692.vcf.gz 05:24:17.162 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-693/all_samples.filtered.693.vcf.gz 05:24:51.845 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-694/all_samples.filtered.694.vcf.gz 05:25:23.436 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-695/all_samples.filtered.695.vcf.gz 05:26:00.471 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-696/all_samples.filtered.696.vcf.gz 05:26:32.201 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-697/all_samples.filtered.697.vcf.gz 05:27:00.074 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-698/all_samples.filtered.698.vcf.gz 05:27:00.259 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-699/all_samples.filtered.699.vcf.gz 05:27:00.496 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-700/all_samples.filtered.700.vcf.gz 05:27:00.673 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-701/all_samples.filtered.701.vcf.gz 05:27:00.877 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-702/all_samples.filtered.702.vcf.gz 05:27:01.233 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-703/all_samples.filtered.703.vcf.gz 05:27:01.470 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-704/all_samples.filtered.704.vcf.gz 05:27:01.715 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-705/all_samples.filtered.705.vcf.gz 05:27:01.980 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-706/all_samples.filtered.706.vcf.gz 05:27:02.242 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-707/all_samples.filtered.707.vcf.gz 05:27:02.432 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-708/all_samples.filtered.708.vcf.gz 05:27:02.677 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-709/all_samples.filtered.709.vcf.gz 05:27:02.902 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-710/all_samples.filtered.710.vcf.gz 05:27:03.085 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-711/all_samples.filtered.711.vcf.gz 05:27:03.225 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-712/all_samples.filtered.712.vcf.gz 05:27:03.381 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-713/all_samples.filtered.713.vcf.gz 05:27:03.559 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-714/all_samples.filtered.714.vcf.gz 05:27:03.727 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-715/all_samples.filtered.715.vcf.gz 05:27:03.917 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-716/all_samples.filtered.716.vcf.gz 05:27:04.097 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-717/all_samples.filtered.717.vcf.gz 05:27:04.516 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-718/all_samples.filtered.718.vcf.gz 05:27:04.769 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-719/all_samples.filtered.719.vcf.gz 05:27:08.519 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-720/all_samples.filtered.720.vcf.gz 05:27:14.428 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-721/all_samples.filtered.721.vcf.gz 05:27:26.958 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-722/all_samples.filtered.722.vcf.gz 05:27:32.585 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-723/all_samples.filtered.723.vcf.gz 05:27:46.758 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-724/all_samples.filtered.724.vcf.gz 05:28:19.919 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-725/all_samples.filtered.725.vcf.gz 05:28:51.383 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-726/all_samples.filtered.726.vcf.gz 05:29:26.321 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-727/all_samples.filtered.727.vcf.gz 05:29:58.577 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-728/all_samples.filtered.728.vcf.gz 05:30:30.095 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-729/all_samples.filtered.729.vcf.gz 05:31:06.717 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-730/all_samples.filtered.730.vcf.gz 05:31:39.215 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-731/all_samples.filtered.731.vcf.gz 05:32:11.998 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-732/all_samples.filtered.732.vcf.gz 05:32:43.591 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-733/all_samples.filtered.733.vcf.gz 05:33:16.309 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-734/all_samples.filtered.734.vcf.gz 05:33:47.897 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-735/all_samples.filtered.735.vcf.gz 05:34:22.936 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-736/all_samples.filtered.736.vcf.gz 05:34:57.790 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-737/all_samples.filtered.737.vcf.gz 05:35:36.318 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-738/all_samples.filtered.738.vcf.gz 05:36:05.789 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-739/all_samples.filtered.739.vcf.gz 05:36:35.408 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-740/all_samples.filtered.740.vcf.gz 05:36:36.388 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-741/all_samples.filtered.741.vcf.gz 05:37:09.472 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-742/all_samples.filtered.742.vcf.gz 05:37:40.777 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-743/all_samples.filtered.743.vcf.gz 05:38:12.269 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-744/all_samples.filtered.744.vcf.gz 05:38:42.859 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-745/all_samples.filtered.745.vcf.gz 05:39:16.670 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-746/all_samples.filtered.746.vcf.gz 05:39:55.570 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-747/all_samples.filtered.747.vcf.gz 05:40:34.234 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-748/all_samples.filtered.748.vcf.gz 05:41:12.559 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-749/all_samples.filtered.749.vcf.gz 05:41:49.415 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-750/all_samples.filtered.750.vcf.gz 05:42:19.434 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-751/all_samples.filtered.751.vcf.gz 05:42:50.586 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-752/all_samples.filtered.752.vcf.gz 05:43:22.286 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-753/all_samples.filtered.753.vcf.gz 05:43:53.647 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-754/all_samples.filtered.754.vcf.gz 05:44:24.967 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-755/all_samples.filtered.755.vcf.gz 05:44:57.554 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-756/all_samples.filtered.756.vcf.gz 05:45:26.419 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-757/all_samples.filtered.757.vcf.gz 05:45:57.969 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-758/all_samples.filtered.758.vcf.gz 05:46:31.780 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-759/all_samples.filtered.759.vcf.gz 05:47:12.009 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-760/all_samples.filtered.760.vcf.gz 05:47:47.324 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-761/all_samples.filtered.761.vcf.gz 05:48:22.974 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-762/all_samples.filtered.762.vcf.gz 05:48:57.331 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-763/all_samples.filtered.763.vcf.gz 05:49:27.329 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-764/all_samples.filtered.764.vcf.gz 05:50:02.348 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-765/all_samples.filtered.765.vcf.gz 05:50:33.177 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-766/all_samples.filtered.766.vcf.gz 05:51:07.750 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-767/all_samples.filtered.767.vcf.gz 05:51:48.598 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-768/all_samples.filtered.768.vcf.gz 05:52:28.727 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-769/all_samples.filtered.769.vcf.gz 05:53:04.541 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-770/all_samples.filtered.770.vcf.gz 05:53:45.879 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-771/all_samples.filtered.771.vcf.gz 05:53:53.746 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-772/all_samples.filtered.772.vcf.gz 05:53:55.163 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-773/all_samples.filtered.773.vcf.gz 05:54:32.551 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-774/all_samples.filtered.774.vcf.gz 05:55:15.009 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-775/all_samples.filtered.775.vcf.gz 05:55:54.779 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-776/all_samples.filtered.776.vcf.gz 05:56:31.914 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-777/all_samples.filtered.777.vcf.gz 05:57:17.959 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-778/all_samples.filtered.778.vcf.gz 05:57:32.284 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-779/all_samples.filtered.779.vcf.gz 05:58:12.092 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-780/all_samples.filtered.780.vcf.gz 05:58:27.172 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-781/all_samples.filtered.781.vcf.gz 05:58:46.748 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-782/all_samples.filtered.782.vcf.gz 05:58:53.106 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-783/all_samples.filtered.783.vcf.gz 05:59:09.235 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-784/all_samples.filtered.784.vcf.gz 06:00:13.742 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-785/all_samples.filtered.785.vcf.gz 06:01:05.992 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-786/all_samples.filtered.786.vcf.gz 06:02:05.011 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-787/all_samples.filtered.787.vcf.gz 06:02:52.213 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-788/all_samples.filtered.788.vcf.gz 06:03:26.137 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-789/all_samples.filtered.789.vcf.gz 06:04:01.001 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-790/all_samples.filtered.790.vcf.gz 06:04:36.128 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-791/all_samples.filtered.791.vcf.gz 06:05:10.180 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-792/all_samples.filtered.792.vcf.gz 06:05:43.795 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-793/all_samples.filtered.793.vcf.gz 06:06:18.254 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-794/all_samples.filtered.794.vcf.gz 06:06:55.458 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-795/all_samples.filtered.795.vcf.gz 06:07:33.121 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-796/all_samples.filtered.796.vcf.gz 06:08:10.574 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-797/all_samples.filtered.797.vcf.gz 06:08:47.892 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-798/all_samples.filtered.798.vcf.gz 06:09:27.940 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-799/all_samples.filtered.799.vcf.gz 06:10:05.414 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-800/attempt-2/all_samples.filtered.800.vcf.gz 06:10:38.667 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-801/all_samples.filtered.801.vcf.gz 06:11:15.870 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-802/all_samples.filtered.802.vcf.gz 06:11:50.145 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-803/all_samples.filtered.803.vcf.gz 06:12:26.808 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-804/all_samples.filtered.804.vcf.gz 06:13:01.649 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-805/all_samples.filtered.805.vcf.gz 06:13:54.196 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-806/all_samples.filtered.806.vcf.gz 06:14:31.444 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-807/all_samples.filtered.807.vcf.gz 06:15:06.889 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-808/all_samples.filtered.808.vcf.gz 06:15:18.962 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-809/all_samples.filtered.809.vcf.gz 06:15:45.809 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-810/all_samples.filtered.810.vcf.gz 06:16:21.118 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-811/all_samples.filtered.811.vcf.gz 06:16:59.012 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-812/all_samples.filtered.812.vcf.gz 06:17:40.683 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-813/all_samples.filtered.813.vcf.gz 06:17:41.081 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-814/all_samples.filtered.814.vcf.gz 06:17:41.272 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-815/all_samples.filtered.815.vcf.gz 06:17:42.391 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-816/all_samples.filtered.816.vcf.gz 06:17:42.610 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-817/all_samples.filtered.817.vcf.gz 06:17:42.802 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-818/all_samples.filtered.818.vcf.gz 06:17:43.031 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-819/all_samples.filtered.819.vcf.gz 06:17:45.031 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-820/all_samples.filtered.820.vcf.gz 06:17:45.238 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-821/all_samples.filtered.821.vcf.gz 06:17:45.547 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-822/all_samples.filtered.822.vcf.gz 06:17:45.746 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-823/all_samples.filtered.823.vcf.gz 06:17:46.308 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-824/all_samples.filtered.824.vcf.gz 06:17:46.511 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-825/all_samples.filtered.825.vcf.gz 06:17:46.740 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-826/all_samples.filtered.826.vcf.gz 06:17:46.958 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-827/all_samples.filtered.827.vcf.gz 06:17:47.262 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-828/all_samples.filtered.828.vcf.gz 06:17:50.537 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-829/all_samples.filtered.829.vcf.gz 06:17:51.586 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-830/all_samples.filtered.830.vcf.gz 06:17:51.975 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-831/all_samples.filtered.831.vcf.gz 06:17:52.748 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-832/all_samples.filtered.832.vcf.gz 06:17:53.630 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-833/all_samples.filtered.833.vcf.gz 06:17:57.629 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-834/all_samples.filtered.834.vcf.gz 06:17:59.821 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-835/all_samples.filtered.835.vcf.gz 06:18:04.115 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-836/all_samples.filtered.836.vcf.gz 06:18:04.352 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-837/all_samples.filtered.837.vcf.gz 06:18:04.607 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-838/all_samples.filtered.838.vcf.gz 06:18:05.034 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-839/all_samples.filtered.839.vcf.gz 06:18:05.789 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-840/all_samples.filtered.840.vcf.gz 06:18:06.239 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-841/all_samples.filtered.841.vcf.gz 06:18:06.450 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-842/all_samples.filtered.842.vcf.gz 06:18:06.793 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-843/all_samples.filtered.843.vcf.gz 06:18:07.219 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-844/all_samples.filtered.844.vcf.gz 06:18:07.535 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-845/all_samples.filtered.845.vcf.gz 06:18:08.082 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-846/all_samples.filtered.846.vcf.gz 06:18:08.282 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-847/all_samples.filtered.847.vcf.gz 06:18:40.618 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-848/all_samples.filtered.848.vcf.gz 06:19:12.427 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-849/all_samples.filtered.849.vcf.gz 06:19:12.712 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-850/all_samples.filtered.850.vcf.gz 06:19:12.956 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-851/all_samples.filtered.851.vcf.gz 06:19:13.216 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-852/all_samples.filtered.852.vcf.gz 06:19:15.081 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-853/all_samples.filtered.853.vcf.gz 06:19:19.802 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-854/all_samples.filtered.854.vcf.gz 06:19:20.007 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-855/all_samples.filtered.855.vcf.gz 06:19:20.268 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-856/all_samples.filtered.856.vcf.gz 06:19:20.494 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-857/all_samples.filtered.857.vcf.gz 06:19:25.840 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-858/all_samples.filtered.858.vcf.gz 06:20:14.596 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-859/all_samples.filtered.859.vcf.gz 06:20:58.432 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-860/all_samples.filtered.860.vcf.gz 06:21:42.364 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-861/all_samples.filtered.861.vcf.gz 06:22:36.465 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-862/all_samples.filtered.862.vcf.gz 06:23:01.405 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-863/all_samples.filtered.863.vcf.gz 06:23:24.386 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-864/all_samples.filtered.864.vcf.gz 06:24:05.438 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-865/all_samples.filtered.865.vcf.gz 06:24:38.250 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-866/all_samples.filtered.866.vcf.gz 06:25:10.196 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-867/all_samples.filtered.867.vcf.gz 06:25:41.322 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-868/all_samples.filtered.868.vcf.gz 06:26:10.660 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-869/all_samples.filtered.869.vcf.gz 06:26:41.313 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-870/all_samples.filtered.870.vcf.gz 06:27:13.088 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-871/all_samples.filtered.871.vcf.gz 06:27:49.576 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-872/all_samples.filtered.872.vcf.gz 06:28:25.890 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-873/all_samples.filtered.873.vcf.gz 06:29:00.462 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-874/all_samples.filtered.874.vcf.gz 06:29:41.456 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-875/all_samples.filtered.875.vcf.gz 06:30:35.483 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-876/all_samples.filtered.876.vcf.gz 06:30:43.366 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-877/all_samples.filtered.877.vcf.gz 06:31:34.394 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-878/all_samples.filtered.878.vcf.gz 06:32:09.688 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-879/all_samples.filtered.879.vcf.gz 06:32:53.837 INFO GatherVcfsCloud - Gathering gs://broad-gpc-wgs-10x-cromwell-executions/JointGenotyping/c078ebec-4f1d-438b-b9fb-e7c4e9e2ed9c/call-ApplyRecalibration/shard-880/all_samples.filtered.880.vcf.gz 06:35:25.844 INFO GatherVcfsCloud - Shutting down engine [June 9, 2018 6:35:25 AM UTC] org.broadinstitute.hellbender.tools.GatherVcfsCloud done. Elapsed time: 418.46 minutes. Runtime.totalMemory()=6433013760 java.lang.RuntimeException: java.util.concurrent.ExecutionException: com.google.cloud.storage.StorageException: www.googleapis.com at org.broadinstitute.hellbender.utils.nio.SeekableByteChannelPrefetcher.read(SeekableByteChannelPrefetcher.java:309) at htsjdk.samtools.seekablestream.SeekablePathStream.read(SeekablePathStream.java:86) at htsjdk.samtools.util.IOUtil.transferByStream(IOUtil.java:147) at org.broadinstitute.hellbender.tools.GatherVcfsCloud.gatherWithBlockCopying(GatherVcfsCloud.java:434) at org.broadinstitute.hellbender.tools.GatherVcfsCloud.doWork(GatherVcfsCloud.java:183) at org.broadinstitute.hellbender.cmdline.CommandLineProgram.runTool(CommandLineProgram.java:136) at org.broadinstitute.hellbender.cmdline.CommandLineProgram.instanceMainPostParseArgs(CommandLineProgram.java:179) at org.broadinstitute.hellbender.cmdline.CommandLineProgram.instanceMain(CommandLineProgram.java:198) at org.broadinstitute.hellbender.Main.runCommandLineProgram(Main.java:152) at org.broadinstitute.hellbender.Main.mainEntry(Main.java:195) at org.broadinstitute.hellbender.Main.main(Main.java:275) Caused by: java.util.concurrent.ExecutionException: com.google.cloud.storage.StorageException: www.googleapis.com at java.util.concurrent.FutureTask.report(FutureTask.java:122) at java.util.concurrent.FutureTask.get(FutureTask.java:192) at org.broadinstitute.hellbender.utils.nio.SeekableByteChannelPrefetcher$WorkUnit.getBuf(SeekableByteChannelPrefetcher.java:136) at org.broadinstitute.hellbender.utils.nio.SeekableByteChannelPrefetcher.fetch(SeekableByteChannelPrefetcher.java:255) at org.broadinstitute.hellbender.utils.nio.SeekableByteChannelPrefetcher.read(SeekableByteChannelPrefetcher.java:300) ... 10 more Caused by: com.google.cloud.storage.StorageException: www.googleapis.com at com.google.cloud.storage.spi.v1.HttpStorageRpc.translate(HttpStorageRpc.java:189) at com.google.cloud.storage.spi.v1.HttpStorageRpc.read(HttpStorageRpc.java:515) at com.google.cloud.storage.BlobReadChannel$1.call(BlobReadChannel.java:127) at com.google.cloud.storage.BlobReadChannel$1.call(BlobReadChannel.java:124) at shaded.cloud_nio.com.google.api.gax.retrying.DirectRetryingExecutor.submit(DirectRetryingExecutor.java:94) at com.google.cloud.RetryHelper.runWithRetries(RetryHelper.java:54) at com.google.cloud.storage.BlobReadChannel.read(BlobReadChannel.java:124) at com.google.cloud.storage.contrib.nio.CloudStorageReadChannel.read(CloudStorageReadChannel.java:114) at org.broadinstitute.hellbender.utils.nio.SeekableByteChannelPrefetcher$WorkUnit.call(SeekableByteChannelPrefetcher.java:131) at org.broadinstitute.hellbender.utils.nio.SeekableByteChannelPrefetcher$WorkUnit.call(SeekableByteChannelPrefetcher.java:104) at java.util.concurrent.FutureTask.run(FutureTask.java:266) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) at java.lang.Thread.run(Thread.java:748) Caused by: java.net.UnknownHostException: www.googleapis.com at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:184) at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) at java.net.Socket.connect(Socket.java:589) at sun.security.ssl.SSLSocketImpl.connect(SSLSocketImpl.java:668) at sun.net.NetworkClient.doConnect(NetworkClient.java:175) at sun.net.www.http.HttpClient.openServer(HttpClient.java:463) at sun.net.www.http.HttpClient.openServer(HttpClient.java:558) at sun.net.www.protocol.https.HttpsClient.(HttpsClient.java:264) at sun.net.www.protocol.https.HttpsClient.New(HttpsClient.java:367) at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.getNewHttpClient(AbstractDelegateHttpsURLConnection.java:191) at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138) at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032) at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:177) at sun.net.www.protocol.https.HttpsURLConnectionImpl.connect(HttpsURLConnectionImpl.java:153) at shaded.cloud_nio.com.google.api.client.http.javanet.NetHttpRequest.execute(NetHttpRequest.java:93) at shaded.cloud_nio.com.google.api.client.http.HttpRequest.execute(HttpRequest.java:972) at shaded.cloud_nio.com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:419) at shaded.cloud_nio.com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeUnparsed(AbstractGoogleClientRequest.java:352) at shaded.cloud_nio.com.google.api.client.googleapis.services.AbstractGoogleClientRequest.executeMedia(AbstractGoogleClientRequest.java:380) at shaded.cloud_nio.com.google.api.services.storage.Storage$Objects$Get.executeMedia(Storage.java:6133) at com.google.cloud.storage.spi.v1.HttpStorageRpc.read(HttpStorageRpc.java:494) ... 12 more Using GATK wrapper script /gatk/build/install/gatk/bin/gatk Running: /gatk/build/install/gatk/bin/gatk GatherVcfsCloud --ignore-safety-checks --gather-type BLOCK --input inputs.list --output all_samples.vcf.gz