##fileformat=VCFv4.2 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT dummy_sample1 dummy_sample2 chr1 53234 heterozygous_deletion_in_one_chromosome CAT C 776.02 LowMQ DP=66;MQ=18;MQ0=11 GT 0/1 0/0 chr1 53235 . A *,C 122.86 LowMQ DP=66;MQ=18;MQ0=11 GT 0/1 0/2 chr1 53236 . T G,* 125.84 LowMQ DP=66;MQ=18;MQ0=12 GT 1/2 0/0 chr1 37961290 homozygous_deletion_in_one_sample AAAAAAAACAAAAAACAAAAAAAAAAAAAAAC A 776.02 LowMQ DP=66;MQ=18;MQ0=11 GT 1|1 0/0 chr1 37961298 . C *,G 776.02 LowMQ DP=66;MQ=18;MQ0=11 GT 1/1 0/2