Tool returned: 0 # # A fatal error has been detected by the Java Runtime Environment: # # SIGBUS (0x7) at pc=0x00002b9cb402bc48, pid=1649, tid=0x00002b9b5eae4200 # # JRE version: Java(TM) SE Runtime Environment (8.0_101-b13) (build 1.8.0_101-b13) # Java VM: Java HotSpot(TM) 64-Bit Server VM (25.101-b13 mixed mode linux-amd64 compressed oops) # Problematic frame: # [error occurred during error reporting (printing problematic frame), id 0x7] # Core dump written. Default location: /scratch.global/friedlab_PREPARE_TEST/mixb/D06403/cromwell-executions/PreProcessingForVariantDiscovery_GATK4/537da21c-9e11-4255-9140-49b01fa88985/call-MarkDuplicates/execution/core or core.1649 # # An error report file with more information is saved as: # /scratch.global/friedlab_PREPARE_TEST/mixb/D06403/cromwell-executions/PreProcessingForVariantDiscovery_GATK4/537da21c-9e11-4255-9140-49b01fa88985/call-MarkDuplicates/execution/hs_err_pid1649.log # # If you would like to submit a bug report, please visit: # http://bugreport.java.com/bugreport/crash.jsp #