2017/09/13 20:16:17 I: Switching to status: pulling-image 2017/09/13 20:16:17 I: Calling SetOperationStatus(pulling-image) 2017/09/13 20:16:17 I: SetOperationStatus(pulling-image) succeeded 2017/09/13 20:16:17 I: Writing new Docker configuration file 2017/09/13 20:16:17 I: Pulling image "tmajarian/epacts-mkl-dstat@sha256:0533a755da58883de35beb801db382015167c122fa3eecf126d1073e986d1530" 2017/09/13 20:18:37 I: Pulled image "tmajarian/epacts-mkl-dstat@sha256:0533a755da58883de35beb801db382015167c122fa3eecf126d1073e986d1530" successfully. 2017/09/13 20:18:37 I: Switching to status: localizing-files 2017/09/13 20:18:37 I: Calling SetOperationStatus(localizing-files) 2017/09/13 20:18:37 I: SetOperationStatus(localizing-files) succeeded 2017/09/13 20:18:37 I: Docker file /cromwell_root/exec.sh maps to host location /mnt/local-disk/exec.sh. 2017/09/13 20:18:37 I: Running command: sudo gsutil -q -m cp gs://fc-98b9dbc7-6dcf-493d-b4fc-cd3dcb844b1f/acd13331-7fb1-4e8a-a725-cc130569e24d/w/99f3ee14-9036-47f3-b0ce-cec301b841d2/call-test_epacts/exec.sh /mnt/local-disk/exec.sh 2017/09/13 20:18:39 I: Done copying files. 2017/09/13 20:18:39 I: Switching to status: running-docker 2017/09/13 20:18:39 I: Calling SetOperationStatus(running-docker) 2017/09/13 20:18:39 I: SetOperationStatus(running-docker) succeeded 2017/09/13 20:18:39 I: Running command: iptables -I FORWARD -d metadata.google.internal -p tcp --dport 80 -j DROP 2017/09/13 20:18:39 I: Setting these data volumes on the docker container: [-v /tmp/ggp-296421644:/tmp/ggp-296421644 -v /mnt/local-disk:/cromwell_root] 2017/09/13 20:18:39 I: Running command: docker run -v /tmp/ggp-296421644:/tmp/ggp-296421644 -v /mnt/local-disk:/cromwell_root -e glob-444572a90afc2dab3b2d14c9b0564dcd.list=/cromwell_root/glob-444572a90afc2dab3b2d14c9b0564dcd.list -e __extra_config_gcs_path=gs://cromwell-auth-broad-t2d-dev/99f3ee14-9036-47f3-b0ce-cec301b841d2_auth.json -e exec=/cromwell_root/exec.sh -e test_epacts-rc.txt=/cromwell_root/test_epacts-rc.txt -e glob-444572a90afc2dab3b2d14c9b0564dcd/=/cromwell_root/glob-444572a90afc2dab3b2d14c9b0564dcd/* tmajarian/epacts-mkl-dstat@sha256:0533a755da58883de35beb801db382015167c122fa3eecf126d1073e986d1530 /tmp/ggp-296421644 2017/09/13 20:18:39 I: Switching to status: delocalizing-files 2017/09/13 20:18:39 I: Calling SetOperationStatus(delocalizing-files) 2017/09/13 20:18:39 I: SetOperationStatus(delocalizing-files) succeeded 2017/09/13 20:18:39 I: Docker file /cromwell_root/glob-444572a90afc2dab3b2d14c9b0564dcd.list maps to host location /mnt/local-disk/glob-444572a90afc2dab3b2d14c9b0564dcd.list. 2017/09/13 20:18:39 I: Running command: sudo gsutil -q -m cp -L /var/log/google-genomics/out.log /mnt/local-disk/glob-444572a90afc2dab3b2d14c9b0564dcd.list gs://fc-98b9dbc7-6dcf-493d-b4fc-cd3dcb844b1f/acd13331-7fb1-4e8a-a725-cc130569e24d/w/99f3ee14-9036-47f3-b0ce-cec301b841d2/call-test_epacts/glob-444572a90afc2dab3b2d14c9b0564dcd.list 2017/09/13 20:18:40 E: command failed: CommandException: No URLs matched: /mnt/local-disk/glob-444572a90afc2dab3b2d14c9b0564dcd.list CommandException: 1 file/object could not be transferred. (exit status 1) 2017/09/13 20:18:40 W: cp failed: gsutil -q -m cp -L /var/log/google-genomics/out.log /mnt/local-disk/glob-444572a90afc2dab3b2d14c9b0564dcd.list gs://fc-98b9dbc7-6dcf-493d-b4fc-cd3dcb844b1f/acd13331-7fb1-4e8a-a725-cc130569e24d/w/99f3ee14-9036-47f3-b0ce-cec301b841d2/call-test_epacts/glob-444572a90afc2dab3b2d14c9b0564dcd.list, command failed: CommandException: No URLs matched: /mnt/local-disk/glob-444572a90afc2dab3b2d14c9b0564dcd.list CommandException: 1 file/object could not be transferred. 2017/09/13 20:18:41 I: Running command: sudo gsutil -q -m cp -L /var/log/google-genomics/out.log /mnt/local-disk/glob-444572a90afc2dab3b2d14c9b0564dcd.list gs://fc-98b9dbc7-6dcf-493d-b4fc-cd3dcb844b1f/acd13331-7fb1-4e8a-a725-cc130569e24d/w/99f3ee14-9036-47f3-b0ce-cec301b841d2/call-test_epacts/glob-444572a90afc2dab3b2d14c9b0564dcd.list 2017/09/13 20:18:42 E: command failed: CommandException: No URLs matched: /mnt/local-disk/glob-444572a90afc2dab3b2d14c9b0564dcd.list CommandException: 1 file/object could not be transferred. (exit status 1) 2017/09/13 20:18:42 W: cp failed: gsutil -q -m cp -L /var/log/google-genomics/out.log /mnt/local-disk/glob-444572a90afc2dab3b2d14c9b0564dcd.list gs://fc-98b9dbc7-6dcf-493d-b4fc-cd3dcb844b1f/acd13331-7fb1-4e8a-a725-cc130569e24d/w/99f3ee14-9036-47f3-b0ce-cec301b841d2/call-test_epacts/glob-444572a90afc2dab3b2d14c9b0564dcd.list, command failed: CommandException: No URLs matched: /mnt/local-disk/glob-444572a90afc2dab3b2d14c9b0564dcd.list CommandException: 1 file/object could not be transferred. 2017/09/13 20:18:44 I: Running command: sudo gsutil -q -m cp -L /var/log/google-genomics/out.log /mnt/local-disk/glob-444572a90afc2dab3b2d14c9b0564dcd.list gs://fc-98b9dbc7-6dcf-493d-b4fc-cd3dcb844b1f/acd13331-7fb1-4e8a-a725-cc130569e24d/w/99f3ee14-9036-47f3-b0ce-cec301b841d2/call-test_epacts/glob-444572a90afc2dab3b2d14c9b0564dcd.list 2017/09/13 20:18:44 E: command failed: CommandException: No URLs matched: /mnt/local-disk/glob-444572a90afc2dab3b2d14c9b0564dcd.list CommandException: 1 file/object could not be transferred. (exit status 1) 2017/09/13 20:18:44 W: cp failed: gsutil -q -m cp -L /var/log/google-genomics/out.log /mnt/local-disk/glob-444572a90afc2dab3b2d14c9b0564dcd.list gs://fc-98b9dbc7-6dcf-493d-b4fc-cd3dcb844b1f/acd13331-7fb1-4e8a-a725-cc130569e24d/w/99f3ee14-9036-47f3-b0ce-cec301b841d2/call-test_epacts/glob-444572a90afc2dab3b2d14c9b0564dcd.list, command failed: CommandException: No URLs matched: /mnt/local-disk/glob-444572a90afc2dab3b2d14c9b0564dcd.list CommandException: 1 file/object could not be transferred. 2017/09/13 20:18:46 I: Switching to status: copied 0 file(s) to "gs://fc-98b9dbc7-6dcf-493d-b4fc-cd3dcb844b1f/acd13331-7fb1-4e8a-a725-cc130569e24d/w/99f3ee14-9036-47f3-b0ce-cec301b841d2/call-test_epacts/glob-444572a90afc2dab3b2d14c9b0564dcd.list" 2017/09/13 20:18:46 I: Calling SetOperationStatus(copied 0 file(s) to "gs://fc-98b9dbc7-6dcf-493d-b4fc-cd3dcb844b1f/acd13331-7fb1-4e8a-a725-cc130569e24d/w/99f3ee14-9036-47f3-b0ce-cec301b841d2/call-test_epacts/glob-444572a90afc2dab3b2d14c9b0564dcd.list") 2017/09/13 20:18:46 I: SetOperationStatus(copied 0 file(s) to "gs://fc-98b9dbc7-6dcf-493d-b4fc-cd3dcb844b1f/acd13331-7fb1-4e8a-a725-cc130569e24d/w/99f3ee14-9036-47f3-b0ce-cec301b841d2/call-test_epacts/glob-444572a90afc2dab3b2d14c9b0564dcd.list") succeeded 2017/09/13 20:18:46 I: Docker file /cromwell_root/test_epacts-rc.txt maps to host location /mnt/local-disk/test_epacts-rc.txt. 2017/09/13 20:18:46 I: Running command: sudo gsutil -q -m cp -L /var/log/google-genomics/out.log /mnt/local-disk/test_epacts-rc.txt gs://fc-98b9dbc7-6dcf-493d-b4fc-cd3dcb844b1f/acd13331-7fb1-4e8a-a725-cc130569e24d/w/99f3ee14-9036-47f3-b0ce-cec301b841d2/call-test_epacts/test_epacts-rc.txt 2017/09/13 20:18:47 E: command failed: CommandException: No URLs matched: /mnt/local-disk/test_epacts-rc.txt CommandException: 1 file/object could not be transferred. (exit status 1) 2017/09/13 20:18:47 W: cp failed: gsutil -q -m cp -L /var/log/google-genomics/out.log /mnt/local-disk/test_epacts-rc.txt gs://fc-98b9dbc7-6dcf-493d-b4fc-cd3dcb844b1f/acd13331-7fb1-4e8a-a725-cc130569e24d/w/99f3ee14-9036-47f3-b0ce-cec301b841d2/call-test_epacts/test_epacts-rc.txt, command failed: CommandException: No URLs matched: /mnt/local-disk/test_epacts-rc.txt CommandException: 1 file/object could not be transferred. 2017/09/13 20:18:49 I: Running command: sudo gsutil -q -m cp -L /var/log/google-genomics/out.log /mnt/local-disk/test_epacts-rc.txt gs://fc-98b9dbc7-6dcf-493d-b4fc-cd3dcb844b1f/acd13331-7fb1-4e8a-a725-cc130569e24d/w/99f3ee14-9036-47f3-b0ce-cec301b841d2/call-test_epacts/test_epacts-rc.txt 2017/09/13 20:18:50 E: command failed: CommandException: No URLs matched: /mnt/local-disk/test_epacts-rc.txt CommandException: 1 file/object could not be transferred. (exit status 1) 2017/09/13 20:18:50 W: cp failed: gsutil -q -m cp -L /var/log/google-genomics/out.log /mnt/local-disk/test_epacts-rc.txt gs://fc-98b9dbc7-6dcf-493d-b4fc-cd3dcb844b1f/acd13331-7fb1-4e8a-a725-cc130569e24d/w/99f3ee14-9036-47f3-b0ce-cec301b841d2/call-test_epacts/test_epacts-rc.txt, command failed: CommandException: No URLs matched: /mnt/local-disk/test_epacts-rc.txt CommandException: 1 file/object could not be transferred. 2017/09/13 20:18:52 I: Running command: sudo gsutil -q -m cp -L /var/log/google-genomics/out.log /mnt/local-disk/test_epacts-rc.txt gs://fc-98b9dbc7-6dcf-493d-b4fc-cd3dcb844b1f/acd13331-7fb1-4e8a-a725-cc130569e24d/w/99f3ee14-9036-47f3-b0ce-cec301b841d2/call-test_epacts/test_epacts-rc.txt 2017/09/13 20:18:53 E: command failed: CommandException: No URLs matched: /mnt/local-disk/test_epacts-rc.txt CommandException: 1 file/object could not be transferred. (exit status 1) 2017/09/13 20:18:53 W: cp failed: gsutil -q -m cp -L /var/log/google-genomics/out.log /mnt/local-disk/test_epacts-rc.txt gs://fc-98b9dbc7-6dcf-493d-b4fc-cd3dcb844b1f/acd13331-7fb1-4e8a-a725-cc130569e24d/w/99f3ee14-9036-47f3-b0ce-cec301b841d2/call-test_epacts/test_epacts-rc.txt, command failed: CommandException: No URLs matched: /mnt/local-disk/test_epacts-rc.txt CommandException: 1 file/object could not be transferred. 2017/09/13 20:18:56 I: Switching to status: copied 0 file(s) to "gs://fc-98b9dbc7-6dcf-493d-b4fc-cd3dcb844b1f/acd13331-7fb1-4e8a-a725-cc130569e24d/w/99f3ee14-9036-47f3-b0ce-cec301b841d2/call-test_epacts/test_epacts-rc.txt" 2017/09/13 20:18:56 I: Calling SetOperationStatus(copied 0 file(s) to "gs://fc-98b9dbc7-6dcf-493d-b4fc-cd3dcb844b1f/acd13331-7fb1-4e8a-a725-cc130569e24d/w/99f3ee14-9036-47f3-b0ce-cec301b841d2/call-test_epacts/test_epacts-rc.txt") 2017/09/13 20:18:56 I: SetOperationStatus(copied 0 file(s) to "gs://fc-98b9dbc7-6dcf-493d-b4fc-cd3dcb844b1f/acd13331-7fb1-4e8a-a725-cc130569e24d/w/99f3ee14-9036-47f3-b0ce-cec301b841d2/call-test_epacts/test_epacts-rc.txt") succeeded 2017/09/13 20:18:56 I: Docker file /cromwell_root/glob-444572a90afc2dab3b2d14c9b0564dcd/* maps to host location /mnt/local-disk/glob-444572a90afc2dab3b2d14c9b0564dcd/*. 2017/09/13 20:18:56 I: Running command: sudo gsutil -q -m cp -L /var/log/google-genomics/out.log /mnt/local-disk/glob-444572a90afc2dab3b2d14c9b0564dcd/* gs://fc-98b9dbc7-6dcf-493d-b4fc-cd3dcb844b1f/acd13331-7fb1-4e8a-a725-cc130569e24d/w/99f3ee14-9036-47f3-b0ce-cec301b841d2/call-test_epacts/glob-444572a90afc2dab3b2d14c9b0564dcd/ 2017/09/13 20:18:57 E: command failed: CommandException: No URLs matched: /mnt/local-disk/glob-444572a90afc2dab3b2d14c9b0564dcd/* CommandException: 1 file/object could not be transferred. (exit status 1) 2017/09/13 20:18:57 W: cp failed: gsutil -q -m cp -L /var/log/google-genomics/out.log /mnt/local-disk/glob-444572a90afc2dab3b2d14c9b0564dcd/* gs://fc-98b9dbc7-6dcf-493d-b4fc-cd3dcb844b1f/acd13331-7fb1-4e8a-a725-cc130569e24d/w/99f3ee14-9036-47f3-b0ce-cec301b841d2/call-test_epacts/glob-444572a90afc2dab3b2d14c9b0564dcd/, command failed: CommandException: No URLs matched: /mnt/local-disk/glob-444572a90afc2dab3b2d14c9b0564dcd/* CommandException: 1 file/object could not be transferred. 2017/09/13 20:18:59 I: Running command: sudo gsutil -q -m cp -L /var/log/google-genomics/out.log /mnt/local-disk/glob-444572a90afc2dab3b2d14c9b0564dcd/* gs://fc-98b9dbc7-6dcf-493d-b4fc-cd3dcb844b1f/acd13331-7fb1-4e8a-a725-cc130569e24d/w/99f3ee14-9036-47f3-b0ce-cec301b841d2/call-test_epacts/glob-444572a90afc2dab3b2d14c9b0564dcd/ 2017/09/13 20:19:00 E: command failed: CommandException: No URLs matched: /mnt/local-disk/glob-444572a90afc2dab3b2d14c9b0564dcd/* CommandException: 1 file/object could not be transferred. (exit status 1) 2017/09/13 20:19:00 W: cp failed: gsutil -q -m cp -L /var/log/google-genomics/out.log /mnt/local-disk/glob-444572a90afc2dab3b2d14c9b0564dcd/* gs://fc-98b9dbc7-6dcf-493d-b4fc-cd3dcb844b1f/acd13331-7fb1-4e8a-a725-cc130569e24d/w/99f3ee14-9036-47f3-b0ce-cec301b841d2/call-test_epacts/glob-444572a90afc2dab3b2d14c9b0564dcd/, command failed: CommandException: No URLs matched: /mnt/local-disk/glob-444572a90afc2dab3b2d14c9b0564dcd/* CommandException: 1 file/object could not be transferred. 2017/09/13 20:19:02 I: Running command: sudo gsutil -q -m cp -L /var/log/google-genomics/out.log /mnt/local-disk/glob-444572a90afc2dab3b2d14c9b0564dcd/* gs://fc-98b9dbc7-6dcf-493d-b4fc-cd3dcb844b1f/acd13331-7fb1-4e8a-a725-cc130569e24d/w/99f3ee14-9036-47f3-b0ce-cec301b841d2/call-test_epacts/glob-444572a90afc2dab3b2d14c9b0564dcd/ 2017/09/13 20:19:02 E: command failed: CommandException: No URLs matched: /mnt/local-disk/glob-444572a90afc2dab3b2d14c9b0564dcd/* CommandException: 1 file/object could not be transferred. (exit status 1) 2017/09/13 20:19:02 W: cp failed: gsutil -q -m cp -L /var/log/google-genomics/out.log /mnt/local-disk/glob-444572a90afc2dab3b2d14c9b0564dcd/* gs://fc-98b9dbc7-6dcf-493d-b4fc-cd3dcb844b1f/acd13331-7fb1-4e8a-a725-cc130569e24d/w/99f3ee14-9036-47f3-b0ce-cec301b841d2/call-test_epacts/glob-444572a90afc2dab3b2d14c9b0564dcd/, command failed: CommandException: No URLs matched: /mnt/local-disk/glob-444572a90afc2dab3b2d14c9b0564dcd/* CommandException: 1 file/object could not be transferred. 2017/09/13 20:19:06 I: Switching to status: copied 0 file(s) to "gs://fc-98b9dbc7-6dcf-493d-b4fc-cd3dcb844b1f/acd13331-7fb1-4e8a-a725-cc130569e24d/w/99f3ee14-9036-47f3-b0ce-cec301b841d2/call-test_epacts/glob-444572a90afc2dab3b2d14c9b0564dcd/" 2017/09/13 20:19:06 I: Calling SetOperationStatus(copied 0 file(s) to "gs://fc-98b9dbc7-6dcf-493d-b4fc-cd3dcb844b1f/acd13331-7fb1-4e8a-a725-cc130569e24d/w/99f3ee14-9036-47f3-b0ce-cec301b841d2/call-test_epacts/glob-444572a90afc2dab3b2d14c9b0564dcd/") 2017/09/13 20:19:07 I: SetOperationStatus(copied 0 file(s) to "gs://fc-98b9dbc7-6dcf-493d-b4fc-cd3dcb844b1f/acd13331-7fb1-4e8a-a725-cc130569e24d/w/99f3ee14-9036-47f3-b0ce-cec301b841d2/call-test_epacts/glob-444572a90afc2dab3b2d14c9b0564dcd/") succeeded