import "SamToUnmappedBams.wdl" as revertWorkflow import "InterestingSubWorkflow.wdl" as wgsAlignment workflow Reanalysis { Array[File] aligned_bams scatter (aligned_bam in aligned_bams) { call revertWorkflow.CramToUnmappedBams as revertWork { input: input_bam = aligned_bam, revert_sam_disk_size = 500, sort_sam_disk_size = 500, validate_sam_file_disk_size = 250 } call wgsAlignment.PairedEndSingleSampleWorkflow as PairedEndSingleSampleWorkflow { input: flowcell_unmapped_bams = revertWork.sortsam_out, sample_name = basename(aligned_bam) } } }