--[ errorlogs/3342_10_14MCB173_ACAAGCTA_tR1-mduprabq-dpfix-wi-grep.log ]-- 1 3670544 . T . . END=3670565 GT:DP:GQ:MIN_DP:PL 0/0:56:99:52:0,105,1674 1 3670566 . A . . END=3670566 GT:DP:GQ:MIN_DP:PL 0/0:55:0:55:0,0,1304 1 3670567 . A . . END=3670607 GT:DP:GQ:MIN_DP:PL 0/0:55:99:52:0,120,1800 1 3670608 . A G, 0.13 . ClippingRankSum=1.086;MLEAC=1,0;MLEAF=0.500,0.00 GT:DP:GQ:PL:SB 0/1:52:13:13,0,1243,154,1258,1411:19,28,1,4 1 3670609 . A . . END=3670631 GT:DP:GQ:MIN_DP:PL 0/0:55:99:54:0,113,1503 1 3670632 . T C, 33.77 . ClippingRankSum=-0.441;MLEAC=1,0;MLEAF=0.500,0.00 GT:DP:GQ:PGT:PID:PL:SB 0/1:53:62:0|1:3670632_T_C:62,0,3085,210,3100,3310:17,31,0,5 1 3670633 . T . . END=3670637 GT:DP:GQ:MIN_DP:PL 0/0:55:99:54:0,120,1800 1 3670638 . G A, 78.77 . ClippingRankSum=0.491;MLEAC=1,0;MLEAF=0.500,0.00 GT:DP:GQ:PGT:PID:PL:SB 0/1:53:99:0|1:3670632_T_C:107,0,3070,252,3088,3340:15,32,0,6 1 3670639 . C . . END=3670642 GT:DP:GQ:MIN_DP:PL 0/0:53:99:51:0,120,1800 1 3670643 . T C, 84.77 . ClippingRankSum=0.851;MLEAC=1,0;MLEAF=0.500,0.00 GT:DP:GQ:PGT:PID:PL:SB 0/1:50:99:0|1:3670632_T_C:113,0,2991,252,3009,3261:14,30,0,6 1 3670644 . C . . END=3670649 GT:DP:GQ:MIN_DP:PL 0/0:49:99:48:0,112,1385 --[ errorlogs/3342_10_14MCB173_ACAAGCTA_tR1-mduprabq-dpfix-woi-grep.log ]-- 1 9545562 . A . . END=9545562 GT:DP:GQ:MIN_DP:PL 0/0:9:26:9:0,27,251 1 9545563 . G . . END=9545567 GT:DP:GQ:MIN_DP:PL 0/0:9:27:9:0,27,261 1 9545568 . G . . END=9545573 GT:DP:GQ:MIN_DP:PL 0/0:9:24:9:0,24,360 1 9545574 . G . . END=9545575 GT:DP:GQ:MIN_DP:PL 0/0:10:27:10:0,27,405 1 9545576 . C . . END=9545576 GT:DP:GQ:MIN_DP:PL 0/0:11:30:11:0,30,450 1 9545577 . G A, 70.77 . ClippingRankSum=-0.925;MLEAC=1,0;MLEAF=0.500,0.00 GT:DP:GQ:PGT:PID:PL:SB 0/1:12:99:0|1:9545577_G_A:99,0,439,126,448,574:5,4,2,1 1 9545578 . G . . END=9545579 GT:DP:GQ:MIN_DP:PL 0/0:12:33:11:0,33,310 1 9545580 . G . . END=9545590 GT:DP:GQ:MIN_DP:PL 0/0:12:36:12:0,36,329 1 9545591 . G . . END=9545594 GT:DP:GQ:MIN_DP:PL 0/0:12:33:12:0,33,495 1 9545595 . C . . END=9545596 GT:DP:GQ:MIN_DP:PL 0/0:12:30:12:0,30,450 1 9545597 . C T, 99.77 . ClippingRankSum=0.185;MLEAC=1,0;MLEAF=0.500,0.00 GT:DP:GQ:PGT:PID:PL:SB 0/1:12:99:0|1:9545577_G_A:128,0,470,155,482,637:4,5,2,1 --[ errorlogs/3342_11_14MCB183_CTGTAGCC_tR1-mduprabq-dpfix-wi-grep.log ]-- 1 3421598 . A . . END=3421601 GT:DP:GQ:MIN_DP:PL 0/0:5:15:5:0,15,154 1 3421602 . A . . END=3421620 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,191 1 3421621 . G . . END=3421621 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,256 1 3421622 . A . . END=3421631 GT:DP:GQ:MIN_DP:PL 0/0:8:24:8:0,24,265 1 3421632 . G . . END=3421649 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,315 1 3421650 . T C, 235.78 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PL:SB 1/1:8:24:264,24,0,264,24,264:0,0,7,1 1 3421651 . A . . END=3421656 GT:DP:GQ:MIN_DP:PL 0/0:8:21:7:0,21,230 1 3421657 . A . . END=3421657 GT:DP:GQ:MIN_DP:PL 0/0:8:24:8:0,24,261 1 3421658 . G . . END=3421666 GT:DP:GQ:MIN_DP:PL 0/0:9:27:9:0,27,292 1 3421667 . T . . END=3421672 GT:DP:GQ:MIN_DP:PL 0/0:9:24:9:0,24,360 1 3421673 . A . . END=3421673 GT:DP:GQ:MIN_DP:PL 0/0:10:27:10:0,27,405 --[ errorlogs/3342_11_14MCB183_CTGTAGCC_tR1-mduprabq-dpfix-woi-grep.log ]-- 1 9545545 . G . . END=9545545 GT:DP:GQ:MIN_DP:PL 0/0:6:0:6:0,0,0 1 9545546 . A . . END=9545547 GT:DP:GQ:MIN_DP:PL 0/0:6:12:6:0,12,180 1 9545548 . C . . END=9545548 GT:DP:GQ:MIN_DP:PL 0/0:5:0:5:0,0,0 1 9545549 . T . . END=9545549 GT:DP:GQ:MIN_DP:PL 0/0:4:11:4:0,12,117 1 9545550 . G . . END=9545576 GT:DP:GQ:MIN_DP:PL 0/0:4:12:4:0,12,136 1 9545577 . G A, 94.77 . ClippingRankSum=-0.727;MLEAC=1,0;MLEAF=0.500,0.00 GT:DP:GQ:PGT:PID:PL:SB 0/1:4:33:0|1:9545577_G_A:123,0,33,126,42,168:0,1,3,0 1 9545578 . G . . END=9545584 GT:DP:GQ:MIN_DP:PL 0/0:4:12:4:0,12,132 1 9545585 . T . . END=9545590 GT:DP:GQ:MIN_DP:PL 0/0:5:15:5:0,15,175 1 9545591 . G . . END=9545592 GT:DP:GQ:MIN_DP:PL 0/0:5:12:5:0,12,180 1 9545593 . A . . END=9545593 GT:DP:GQ:MIN_DP:PL 0/0:6:15:6:0,15,225 1 9545594 . T . . END=9545596 GT:DP:GQ:MIN_DP:PL 0/0:6:12:6:0,12,180 --[ errorlogs/3342_12_14MCB184_AGTACAAG_tR1-mduprabq-dpfix-wi-grep.log ]-- 1 3421634 . C . . END=3421639 GT:DP:GQ:MIN_DP:PL 0/0:4:9:3:0,9,100 1 3421640 . T . . END=3421642 GT:DP:GQ:MIN_DP:PL 0/0:4:12:4:0,12,134 1 3421643 . C . . END=3421645 GT:DP:GQ:MIN_DP:PL 0/0:5:15:5:0,15,150 1 3421646 . G . . END=3421648 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,178 1 3421649 . A . . END=3421649 GT:DP:GQ:MIN_DP:PL 0/0:8:24:8:0,24,250 1 3421650 . T C, 220.78 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PL:SB 1/1:8:24:249,24,0,249,24,249:0,0,7,1 1 3421651 . A . . END=3421665 GT:DP:GQ:MIN_DP:PL 0/0:8:24:8:0,24,243 1 3421666 . C . . END=3421672 GT:DP:GQ:MIN_DP:PL 0/0:9:27:9:0,27,294 1 3421673 . A . . END=3421673 GT:DP:GQ:MIN_DP:PL 0/0:9:4:9:0,4,234 1 3421674 . A . . END=3421676 GT:DP:GQ:MIN_DP:PL 0/0:10:30:10:0,30,318 1 3421677 . C . . END=3421678 GT:DP:GQ:MIN_DP:PL 0/0:10:27:10:0,27,405 --[ errorlogs/3342_12_14MCB184_AGTACAAG_tR1-mduprabq-dpfix-woi-grep.log ]-- 1 5019242 . T . . END=5019245 GT:DP:GQ:MIN_DP:PL 0/0:27:24:26:0,24,360 1 5019246 . G . . END=5019248 GT:DP:GQ:MIN_DP:PL 0/0:26:21:26:0,21,315 1 5019249 . C . . END=5019249 GT:DP:GQ:MIN_DP:PL 0/0:26:15:26:0,15,225 1 5019250 . T . . END=5019250 GT:DP:GQ:MIN_DP:PL 0/0:26:12:26:0,12,180 1 5019251 . T . . END=5019251 GT:DP:GQ:MIN_DP:PL 0/0:24:6:24:0,6,90 1 5019252 . CGGG C, 399.73 . ClippingRankSum=0.361;MLEAC=1,0;MLEAF=0.500,0.00 GT:DP:GQ:PL:SB 0/1:15:42:437,0,42,447,78,525:0,3,10,2 1 5019256 . G . . END=5019256 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,18 1 5019257 . G . . END=5019257 GT:DP:GQ:MIN_DP:PL 0/0:22:33:22:0,33,653 1 5019258 . G . . END=5019261 GT:DP:GQ:MIN_DP:PL 0/0:21:48:21:0,48,720 1 5019262 . G . . END=5019264 GT:DP:GQ:MIN_DP:PL 0/0:22:51:21:0,51,765 1 5019265 . G . . END=5019265 GT:DP:GQ:MIN_DP:PL 0/0:20:26:20:0,27,556 --[ errorlogs/3342_13_14MCB190_AACAACCA_tR1-mduprabq-dpfix-wi-grep.log ]-- 1 3421632 . G . . END=3421635 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,315 1 3421636 . T . . END=3421638 GT:DP:GQ:MIN_DP:PL 0/0:9:24:9:0,24,360 1 3421639 . T . . END=3421641 GT:DP:GQ:MIN_DP:PL 0/0:10:27:10:0,27,405 1 3421642 . G . . END=3421642 GT:DP:GQ:MIN_DP:PL 0/0:11:30:11:0,30,450 1 3421643 . C . . END=3421649 GT:DP:GQ:MIN_DP:PL 0/0:10:27:10:0,27,405 1 3421650 . T C, 338.77 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PL:SB 1/1:10:30:367,30,0,367,30,367:0,0,9,1 1 3421651 . A . . END=3421652 GT:DP:GQ:MIN_DP:PL 0/0:11:30:11:0,30,450 1 3421653 . A . . END=3421656 GT:DP:GQ:MIN_DP:PL 0/0:12:33:11:0,33,356 1 3421657 . A . . END=3421660 GT:DP:GQ:MIN_DP:PL 0/0:12:36:12:0,36,382 1 3421661 . A . . END=3421663 GT:DP:GQ:MIN_DP:PL 0/0:13:39:13:0,39,422 1 3421664 . C . . END=3421665 GT:DP:GQ:MIN_DP:PL 0/0:14:42:14:0,42,496 --[ errorlogs/3342_13_14MCB190_AACAACCA_tR1-mduprabq-dpfix-woi-grep.log ]-- 1 5019242 . T . . END=5019243 GT:DP:GQ:MIN_DP:PL 0/0:35:30:35:0,30,450 1 5019244 . C . . END=5019246 GT:DP:GQ:MIN_DP:PL 0/0:35:27:35:0,27,405 1 5019247 . G . . END=5019249 GT:DP:GQ:MIN_DP:PL 0/0:33:24:33:0,24,360 1 5019250 . T . . END=5019250 GT:DP:GQ:MIN_DP:PL 0/0:32:21:32:0,21,315 1 5019251 . T . . END=5019251 GT:DP:GQ:MIN_DP:PL 0/0:32:15:32:0,15,225 1 5019252 . CGGGG C,CGG, 209.73 . ClippingRankSum=0.747;MLEAC=1,1,0;MLEAF=0.500,0.500,0.00 GT:DP:GQ:PL:SB 1/2:8:69:247,113,309,71,0,69,202,133,81,212:1,0,4,0 1 5019257 . G . . END=5019257 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,491 1 5019258 . G . . END=5019258 GT:DP:GQ:MIN_DP:PL 0/0:24:54:24:0,54,810 1 5019259 . G . . END=5019261 GT:DP:GQ:MIN_DP:PL 0/0:26:60:26:0,60,900 1 5019262 . G . . END=5019262 GT:DP:GQ:MIN_DP:PL 0/0:28:53:28:0,53,840 1 5019263 . G . . END=5019265 GT:DP:GQ:MIN_DP:PL 0/0:27:69:27:0,66,990 --[ errorlogs/3342_14_14MCB191_AACCGAGA_tR1-mduprabq-dpfix-wi-grep.log ]-- 1 3421628 . A . . END=3421628 GT:DP:GQ:MIN_DP:PL 0/0:6:15:6:0,15,225 1 3421629 . A . . END=3421634 GT:DP:GQ:MIN_DP:PL 0/0:7:18:6:0,18,199 1 3421635 . A . . END=3421642 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,315 1 3421643 . C . . END=3421647 GT:DP:GQ:MIN_DP:PL 0/0:9:27:9:0,27,285 1 3421648 . G . . END=3421649 GT:DP:GQ:MIN_DP:PL 0/0:11:33:11:0,33,367 1 3421650 . T C, 368.77 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PL:SB 1/1:11:33:397,33,0,397,33,397:0,0,10,1 1 3421651 . A . . END=3421652 GT:DP:GQ:MIN_DP:PL 0/0:11:33:11:0,33,358 1 3421653 . A . . END=3421665 GT:DP:GQ:MIN_DP:PL 0/0:12:36:12:0,36,384 1 3421666 . C . . END=3421668 GT:DP:GQ:MIN_DP:PL 0/0:13:39:13:0,39,443 1 3421669 . T . . END=3421684 GT:DP:GQ:MIN_DP:PL 0/0:14:42:14:0,42,447 1 3421685 . A . . END=3421685 GT:DP:GQ:MIN_DP:PL 0/0:15:45:15:0,45,483 --[ errorlogs/3342_14_14MCB191_AACCGAGA_tR1-mduprabq-dpfix-woi-grep.log ]-- 1 6214731 . G . . END=6214731 GT:DP:GQ:MIN_DP:PL 0/0:14:9:14:0,9,416 1 6214732 . C . . END=6214732 GT:DP:GQ:MIN_DP:PL 0/0:14:33:14:0,33,495 1 6214733 . G . . END=6214733 GT:DP:GQ:MIN_DP:PL 0/0:14:21:14:0,21,413 1 6214734 . G . . END=6214737 GT:DP:GQ:MIN_DP:PL 0/0:14:36:12:0,36,400 1 6214738 . C . . END=6214739 GT:DP:GQ:MIN_DP:PL 0/0:12:30:12:0,30,450 1 6214740 . G C, 372.77 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PL:SB 1/1:12:36:401,36,0,401,36,401:0,0,2,10 1 6214741 . G . . END=6214746 GT:DP:GQ:MIN_DP:PL 0/0:13:33:13:0,33,495 1 6214747 . G . . END=6214750 GT:DP:GQ:MIN_DP:PL 0/0:14:36:13:0,36,540 1 6214751 . G . . END=6214756 GT:DP:GQ:MIN_DP:PL 0/0:13:33:12:0,33,495 1 6214757 . G . . END=6214759 GT:DP:GQ:MIN_DP:PL 0/0:13:27:13:0,27,405 1 6214760 . G . . END=6214763 GT:DP:GQ:MIN_DP:PL 0/0:13:24:12:0,24,360 --[ errorlogs/3342_15_14MCB198_AACGCTTA_tR1-mduprabq-dpfix-wi-grep.log ]-- 1 3216732 . A . . END=3216735 GT:DP:GQ:MIN_DP:PL 0/0:36:96:35:0,96,1440 1 3216736 . A . . END=3216736 GT:DP:GQ:MIN_DP:PL 0/0:36:86:36:0,87,1174 1 3216737 . G . . END=3216738 GT:DP:GQ:MIN_DP:PL 0/0:36:90:36:0,90,1350 1 3216739 . C . . END=3216739 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,1305 1 3216740 . A . . END=3216741 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,93,1395 1 3216742 . G T, 1048.77 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PL:SB 1/1:34:99:1077,102,0,1077,102,1077:0,0,13,21 1 3216743 . A . . END=3216748 GT:DP:GQ:MIN_DP:PL 0/0:36:93:34:0,90,1350 1 3216749 . C . . END=3216752 GT:DP:GQ:MIN_DP:PL 0/0:34:81:33:0,81,1215 1 3216753 . G . . END=3216753 GT:DP:GQ:MIN_DP:PL 0/0:33:65:33:0,65,1066 1 3216754 . G . . END=3216754 GT:DP:GQ:MIN_DP:PL 0/0:32:81:32:0,81,1215 1 3216755 . A . . END=3216762 GT:DP:GQ:MIN_DP:PL 0/0:30:72:28:0,72,1080 --[ errorlogs/3342_15_14MCB198_AACGCTTA_tR1-mduprabq-dpfix-woi-grep.log ]-- 1 6214713 . C . . END=6214716 GT:DP:GQ:MIN_DP:PL 0/0:15:24:15:0,24,360 1 6214717 . C . . END=6214720 GT:DP:GQ:MIN_DP:PL 0/0:14:21:13:0,21,315 1 6214721 . G . . END=6214727 GT:DP:GQ:MIN_DP:PL 0/0:12:24:10:0,24,360 1 6214728 . C . . END=6214734 GT:DP:GQ:MIN_DP:PL 0/0:10:27:9:0,27,307 1 6214735 . A . . END=6214739 GT:DP:GQ:MIN_DP:PL 0/0:9:24:9:0,24,360 1 6214740 . G C, 281.78 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PL:SB 1/1:9:27:310,27,0,310,27,310:0,0,4,5 1 6214741 . G . . END=6214745 GT:DP:GQ:MIN_DP:PL 0/0:9:24:9:0,24,360 1 6214746 . C . . END=6214749 GT:DP:GQ:MIN_DP:PL 0/0:10:30:10:0,30,318 1 6214750 . C . . END=6214756 GT:DP:GQ:MIN_DP:PL 0/0:11:33:11:0,33,350 1 6214757 . G . . END=6214779 GT:DP:GQ:MIN_DP:PL 0/0:10:30:10:0,30,316 1 6214780 . C . . END=6214780 GT:DP:GQ:MIN_DP:PL 0/0:10:27:10:0,27,405 --[ errorlogs/3342_16_14MCB199_AAGACGGA_tR1-mduprabq-dpfix-wi-grep.log ]-- 1 3421609 . T . . END=3421621 GT:DP:GQ:MIN_DP:PL 0/0:5:15:5:0,15,162 1 3421622 . A . . END=3421639 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,198 1 3421640 . T . . END=3421642 GT:DP:GQ:MIN_DP:PL 0/0:6:15:6:0,15,225 1 3421643 . C . . END=3421647 GT:DP:GQ:MIN_DP:PL 0/0:7:18:7:0,18,270 1 3421648 . G . . END=3421649 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,315 1 3421650 . T C, 260.78 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PL:SB 1/1:8:24:289,24,0,289,24,289:0,0,6,2 1 3421651 . A . . END=3421664 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,225 1 3421665 . T . . END=3421665 GT:DP:GQ:MIN_DP:PL 0/0:7:18:7:0,18,270 1 3421666 . C . . END=3421685 GT:DP:GQ:MIN_DP:PL 0/0:8:21:7:0,21,234 1 3421686 . A . . END=3421688 GT:DP:GQ:MIN_DP:PL 0/0:8:24:8:0,24,248 1 3421689 . G . . END=3421689 GT:DP:GQ:MIN_DP:PL 0/0:9:27:9:0,27,283 --[ errorlogs/3342_16_14MCB199_AAGACGGA_tR1-mduprabq-dpfix-woi-grep.log ]-- 1 10003113 . A . . END=10003114 GT:DP:GQ:MIN_DP:PL 0/0:3:9:3:0,9,103 1 10003115 . C . . END=10003119 GT:DP:GQ:MIN_DP:PL 0/0:4:12:4:0,12,136 1 10003120 . T . . END=10003130 GT:DP:GQ:MIN_DP:PL 0/0:4:9:3:0,9,113 1 10003131 . C . . END=10003134 GT:DP:GQ:MIN_DP:PL 0/0:4:12:4:0,12,131 1 10003135 . T . . END=10003136 GT:DP:GQ:MIN_DP:PL 0/0:4:9:4:0,9,135 1 10003137 . T C, 119.03 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PL:SB 1/1:4:12:147,12,0,147,12,147:0,0,4,0 1 10003138 . G . . END=10003152 GT:DP:GQ:MIN_DP:PL 0/0:4:9:3:0,9,95 1 10003153 . A . . END=10003157 GT:DP:GQ:MIN_DP:PL 0/0:4:12:4:0,12,117 1 10003158 . T . . END=10003171 GT:DP:GQ:MIN_DP:PL 0/0:5:15:5:0,15,139 1 10003172 . C . . END=10003173 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,184 1 10003174 . C . . END=10003174 GT:DP:GQ:MIN_DP:PL 0/0:6:17:6:0,18,178 --[ errorlogs/3342_17_14MCB232_AAGGTACA_tR1-mduprabq-dpfix-wi-grep.log ]-- 1 3421581 . T . . END=3421587 GT:DP:GQ:MIN_DP:PL 0/0:3:9:3:0,9,94 1 3421588 . A . . END=3421606 GT:DP:GQ:MIN_DP:PL 0/0:3:6:2:0,6,64 1 3421607 . C . . END=3421618 GT:DP:GQ:MIN_DP:PL 0/0:3:9:3:0,9,94 1 3421619 . A . . END=3421641 GT:DP:GQ:MIN_DP:PL 0/0:2:6:2:0,6,65 1 3421642 . G . . END=3421649 GT:DP:GQ:MIN_DP:PL 0/0:3:9:3:0,9,94 1 3421650 . T C, 45.56 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PL:SB 1/1:2:6:72,6,0,72,6,72:0,0,1,1 1 3421651 . A . . END=3421653 GT:DP:GQ:MIN_DP:PL 0/0:3:9:3:0,9,95 1 3421654 . A . . END=3421663 GT:DP:GQ:MIN_DP:PL 0/0:4:12:4:0,12,126 1 3421664 . C . . END=3421667 GT:DP:GQ:MIN_DP:PL 0/0:5:15:5:0,15,151 1 3421668 . C . . END=3421668 GT:DP:GQ:MIN_DP:PL 0/0:5:0:5:0,0,92 1 3421669 . T . . END=3421674 GT:DP:GQ:MIN_DP:PL 0/0:5:15:5:0,15,148 --[ errorlogs/3342_17_14MCB232_AAGGTACA_tR1-mduprabq-dpfix-woi-grep.log ]-- 1 10003118 . T . . END=10003122 GT:DP:GQ:MIN_DP:PL 0/0:4:9:4:0,9,135 1 10003123 . A . . END=10003132 GT:DP:GQ:MIN_DP:PL 0/0:4:6:3:0,6,90 1 10003133 . A . . END=10003133 GT:DP:GQ:MIN_DP:PL 0/0:4:9:4:0,9,135 1 10003134 . A . . END=10003134 GT:DP:GQ:MIN_DP:PL 0/0:4:12:4:0,12,113 1 10003135 . T . . END=10003136 GT:DP:GQ:MIN_DP:PL 0/0:5:15:5:0,15,138 1 10003137 . T C, 119.90 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PL:SB 1/1:5:15:148,15,0,148,15,148:0,0,3,2 1 10003138 . G . . END=10003145 GT:DP:GQ:MIN_DP:PL 0/0:5:15:5:0,15,144 1 10003146 . A . . END=10003149 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,181 1 10003150 . T . . END=10003154 GT:DP:GQ:MIN_DP:PL 0/0:6:15:6:0,15,225 1 10003155 . C . . END=10003155 GT:DP:GQ:MIN_DP:PL 0/0:6:12:6:0,12,180 1 10003156 . T . . END=10003161 GT:DP:GQ:MIN_DP:PL 0/0:7:15:6:0,15,225 --[ errorlogs/3342_18_14MCB233_ACACAGAA_tR1-mduprabq-dpfix-wi-grep.log ]-- 1 3421640 . T . . END=3421641 GT:DP:GQ:MIN_DP:PL 0/0:13:39:13:0,39,423 1 3421642 . G . . END=3421644 GT:DP:GQ:MIN_DP:PL 0/0:14:42:14:0,42,449 1 3421645 . T . . END=3421647 GT:DP:GQ:MIN_DP:PL 0/0:15:45:15:0,45,474 1 3421648 . G . . END=3421648 GT:DP:GQ:MIN_DP:PL 0/0:16:48:16:0,48,564 1 3421649 . A . . END=3421649 GT:DP:GQ:MIN_DP:PL 0/0:17:51:17:0,51,523 1 3421650 . T C, 530.77 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PL:SB 1/1:17:51:559,51,0,559,51,559:0,0,11,6 1 3421651 . A . . END=3421651 GT:DP:GQ:MIN_DP:PL 0/0:18:54:18:0,54,552 1 3421652 . T . . END=3421653 GT:DP:GQ:MIN_DP:PL 0/0:18:53:18:0,54,531 1 3421654 . A . . END=3421654 GT:DP:GQ:MIN_DP:PL 0/0:18:54:18:0,54,564 1 3421655 . A . . END=3421655 GT:DP:GQ:MIN_DP:PL 0/0:19:57:19:0,57,581 1 3421656 . T . . END=3421657 GT:DP:GQ:MIN_DP:PL 0/0:19:56:19:0,57,558 --[ errorlogs/3342_18_14MCB233_ACACAGAA_tR1-mduprabq-dpfix-woi-grep.log ]-- 1 6214723 . C . . END=6214726 GT:DP:GQ:MIN_DP:PL 0/0:19:48:19:0,48,720 1 6214727 . G . . END=6214729 GT:DP:GQ:MIN_DP:PL 0/0:19:42:19:0,42,630 1 6214730 . G . . END=6214733 GT:DP:GQ:MIN_DP:PL 0/0:19:48:18:0,48,720 1 6214734 . G . . END=6214737 GT:DP:GQ:MIN_DP:PL 0/0:18:45:16:0,45,675 1 6214738 . C . . END=6214739 GT:DP:GQ:MIN_DP:PL 0/0:16:42:16:0,42,630 1 6214740 . G C, 495.77 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PL:SB 1/1:16:48:524,48,0,524,48,524:0,0,4,12 1 6214741 . G . . END=6214742 GT:DP:GQ:MIN_DP:PL 0/0:17:45:17:0,45,675 1 6214743 . C . . END=6214743 GT:DP:GQ:MIN_DP:PL 0/0:18:48:18:0,48,720 1 6214744 . C . . END=6214744 GT:DP:GQ:MIN_DP:PL 0/0:17:45:17:0,45,675 1 6214745 . C . . END=6214754 GT:DP:GQ:MIN_DP:PL 0/0:17:39:16:0,39,585 1 6214755 . C . . END=6214755 GT:DP:GQ:MIN_DP:PL 0/0:16:14:16:0,14,468 --[ errorlogs/3342_19_140_spleen_ACAGCAGA_tR1-mduprabq-dpfix-wi-grep.log ]-- 1 3421622 . A . . END=3421624 GT:DP:GQ:MIN_DP:PL 0/0:5:12:5:0,12,180 1 3421625 . G . . END=3421626 GT:DP:GQ:MIN_DP:PL 0/0:5:9:5:0,9,135 1 3421627 . C . . END=3421637 GT:DP:GQ:MIN_DP:PL 0/0:5:12:4:0,12,134 1 3421638 . T . . END=3421646 GT:DP:GQ:MIN_DP:PL 0/0:5:15:5:0,15,167 1 3421647 . T . . END=3421649 GT:DP:GQ:MIN_DP:PL 0/0:5:12:5:0,12,180 1 3421650 . T C, 155.90 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PL:SB 1/1:5:15:184,15,0,184,15,184:0,0,4,1 1 3421651 . A . . END=3421653 GT:DP:GQ:MIN_DP:PL 0/0:5:12:5:0,12,180 1 3421654 . A . . END=3421659 GT:DP:GQ:MIN_DP:PL 0/0:6:15:5:0,15,184 1 3421660 . C . . END=3421661 GT:DP:GQ:MIN_DP:PL 0/0:5:12:5:0,12,180 1 3421662 . A . . END=3421662 GT:DP:GQ:MIN_DP:PL 0/0:5:0:5:0,0,127 1 3421663 . T . . END=3421670 GT:DP:GQ:MIN_DP:PL 0/0:5:12:5:0,12,180 --[ errorlogs/3342_19_140_spleen_ACAGCAGA_tR1-mduprabq-dpfix-woi-grep.log ]-- 1 10000257 . T . . END=10000273 GT:DP:GQ:MIN_DP:PL 0/0:4:9:3:0,9,101 1 10003079 . C . . END=10003095 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,199 1 10003096 . A . . END=10003114 GT:DP:GQ:MIN_DP:PL 0/0:6:15:5:0,15,166 1 10003115 . C . . END=10003125 GT:DP:GQ:MIN_DP:PL 0/0:5:12:5:0,12,180 1 10003126 . T . . END=10003136 GT:DP:GQ:MIN_DP:PL 0/0:5:15:5:0,15,165 1 10003137 . T C, 153.90 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PL:SB 1/1:5:15:182,15,0,182,15,182:0,0,5,0 1 10003138 . G . . END=10003138 GT:DP:GQ:MIN_DP:PL 0/0:5:15:5:0,15,168 1 10003139 . C . . END=10003142 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,198 1 10003143 . A . . END=10003143 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,244 1 10003144 . T . . END=10003148 GT:DP:GQ:MIN_DP:PL 0/0:8:24:8:0,24,261 1 10003149 . A . . END=10003155 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,315 --[ errorlogs/3342_1_14MCB108_AACGTGAT_tR1-mduprabq-dpfix-wi-grep.log ]-- 1 3421628 . A . . END=3421631 GT:DP:GQ:MIN_DP:PL 0/0:10:30:10:0,30,344 1 3421632 . G . . END=3421637 GT:DP:GQ:MIN_DP:PL 0/0:11:33:11:0,33,367 1 3421638 . T . . END=3421639 GT:DP:GQ:MIN_DP:PL 0/0:11:30:11:0,30,450 1 3421640 . T . . END=3421643 GT:DP:GQ:MIN_DP:PL 0/0:12:33:12:0,33,495 1 3421644 . A . . END=3421649 GT:DP:GQ:MIN_DP:PL 0/0:13:36:12:0,36,401 1 3421650 . T C, 405.77 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PL:SB 1/1:12:36:434,36,0,434,36,434:0,0,11,1 1 3421651 . A . . END=3421653 GT:DP:GQ:MIN_DP:PL 0/0:12:33:12:0,33,495 1 3421654 . A . . END=3421657 GT:DP:GQ:MIN_DP:PL 0/0:14:36:13:0,36,540 1 3421658 . G . . END=3421661 GT:DP:GQ:MIN_DP:PL 0/0:15:39:15:0,39,585 1 3421662 . A . . END=3421663 GT:DP:GQ:MIN_DP:PL 0/0:15:42:15:0,42,630 1 3421664 . C . . END=3421665 GT:DP:GQ:MIN_DP:PL 0/0:16:45:15:0,45,516 --[ errorlogs/3342_1_14MCB108_AACGTGAT_tR1-mduprabq-dpfix-woi-grep.log ]-- 1 5019245 . A . . END=5019245 GT:DP:GQ:MIN_DP:PL 0/0:45:48:45:0,48,720 1 5019246 . G . . END=5019248 GT:DP:GQ:MIN_DP:PL 0/0:45:39:43:0,39,585 1 5019249 . C . . END=5019249 GT:DP:GQ:MIN_DP:PL 0/0:42:36:42:0,36,540 1 5019250 . T . . END=5019250 GT:DP:GQ:MIN_DP:PL 0/0:41:33:41:0,33,495 1 5019251 . T . . END=5019251 GT:DP:GQ:MIN_DP:PL 0/0:40:15:40:0,15,225 1 5019252 . CGGG C, 215.73 . ClippingRankSum=1.003;MLEAC=1,0;MLEAF=0.500,0.00 GT:DP:GQ:PL:SB 0/1:13:49:253,0,49,264,76,341:1,3,8,1 1 5019256 . G . . END=5019256 GT:DP:GQ:MIN_DP:PL 0/0:24:0:24:0,0,422 1 5019257 . G . . END=5019257 GT:DP:GQ:MIN_DP:PL 0/0:24:48:24:0,48,720 1 5019258 . G . . END=5019258 GT:DP:GQ:MIN_DP:PL 0/0:24:51:24:0,51,765 1 5019259 . G . . END=5019259 GT:DP:GQ:MIN_DP:PL 0/0:24:45:24:0,45,675 1 5019260 . G . . END=5019260 GT:DP:GQ:MIN_DP:PL 0/0:24:39:24:0,39,585 --[ errorlogs/3342_20_173_spleen_ACCTCCAA_tR1-mduprabq-dpfix-wi-grep.log ]-- 1 3421581 . T . . END=3421605 GT:DP:GQ:MIN_DP:PL 0/0:3:9:3:0,9,98 1 3421606 . G . . END=3421606 GT:DP:GQ:MIN_DP:PL 0/0:3:8:3:0,9,92 1 3421607 . C . . END=3421639 GT:DP:GQ:MIN_DP:PL 0/0:3:9:3:0,9,98 1 3421640 . T . . END=3421646 GT:DP:GQ:MIN_DP:PL 0/0:4:12:4:0,12,136 1 3421647 . T . . END=3421649 GT:DP:GQ:MIN_DP:PL 0/0:4:9:4:0,9,135 1 3421650 . T C, 120.03 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PL:SB 1/1:4:12:148,12,0,148,12,148:0,0,3,1 1 3421651 . A . . END=3421652 GT:DP:GQ:MIN_DP:PL 0/0:4:9:4:0,9,135 1 3421653 . A . . END=3421665 GT:DP:GQ:MIN_DP:PL 0/0:4:12:4:0,12,135 1 3421666 . C . . END=3421666 GT:DP:GQ:MIN_DP:PL 0/0:5:15:5:0,15,181 1 3421667 . T . . END=3421688 GT:DP:GQ:MIN_DP:PL 0/0:4:12:4:0,12,135 1 3421689 . G . . END=3421699 GT:DP:GQ:MIN_DP:PL 0/0:5:15:5:0,15,162 --[ errorlogs/3342_20_173_spleen_ACCTCCAA_tR1-mduprabq-dpfix-woi-grep.log ]-- 1 6214725 . C . . END=6214727 GT:DP:GQ:MIN_DP:PL 0/0:12:24:12:0,24,360 1 6214728 . C . . END=6214729 GT:DP:GQ:MIN_DP:PL 0/0:12:21:10:0,21,315 1 6214730 . G . . END=6214732 GT:DP:GQ:MIN_DP:PL 0/0:13:27:13:0,27,405 1 6214733 . G . . END=6214733 GT:DP:GQ:MIN_DP:PL 0/0:13:30:13:0,30,450 1 6214734 . G . . END=6214739 GT:DP:GQ:MIN_DP:PL 0/0:12:27:11:0,27,405 1 6214740 . G C, 294.77 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PL:SB 1/1:10:30:323,30,0,323,30,323:0,0,0,10 1 6214741 . G . . END=6214741 GT:DP:GQ:MIN_DP:PL 0/0:12:30:12:0,30,450 1 6214742 . T . . END=6214744 GT:DP:GQ:MIN_DP:PL 0/0:11:0:11:0,0,267 1 6214745 . C . . END=6214746 GT:DP:GQ:MIN_DP:PL 0/0:11:30:11:0,30,450 1 6214747 . G . . END=6214747 GT:DP:GQ:MIN_DP:PL 0/0:11:13:11:0,13,357 1 6214748 . C . . END=6214751 GT:DP:GQ:MIN_DP:PL 0/0:11:30:11:0,30,450 --[ errorlogs/3342_21_184_spleen_ACGCTCGA_tR1-mduprabq-dpfix-wi-grep.log ]-- 1 3421821 . A . . END=3421821 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,156 1 3421822 . C . . END=3421826 GT:DP:GQ:MIN_DP:PL 0/0:8:21:7:0,21,217 1 3421827 . T . . END=3421828 GT:DP:GQ:MIN_DP:PL 0/0:8:24:8:0,24,252 1 3421829 . C . . END=3421847 GT:DP:GQ:MIN_DP:PL 0/0:8:21:7:0,21,239 1 3421848 . C . . END=3421848 GT:DP:GQ:MIN_DP:PL 0/0:7:15:7:0,15,225 1 3421849 . C T, 223.80 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PL:SB 1/1:7:21:252,21,0,252,21,252:0,0,3,4 1 3421850 . G . . END=3421850 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,264 1 3421851 . C . . END=3421861 GT:DP:GQ:MIN_DP:PL 0/0:7:15:7:0,15,225 1 3421862 . C . . END=3421866 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,206 1 3421867 . G . . END=3421872 GT:DP:GQ:MIN_DP:PL 0/0:6:15:6:0,15,225 1 3421873 . G . . END=3421876 GT:DP:GQ:MIN_DP:PL 0/0:6:12:6:0,12,180 --[ errorlogs/3342_21_184_spleen_ACGCTCGA_tR1-mduprabq-dpfix-woi-grep.log ]-- 1 6214724 . T . . END=6214726 GT:DP:GQ:MIN_DP:PL 0/0:7:15:5:0,15,176 1 6214727 . G . . END=6214727 GT:DP:GQ:MIN_DP:PL 0/0:5:14:5:0,15,166 1 6214728 . C . . END=6214728 GT:DP:GQ:MIN_DP:PL 0/0:5:15:5:0,15,182 1 6214729 . C . . END=6214735 GT:DP:GQ:MIN_DP:PL 0/0:5:12:5:0,12,180 1 6214736 . C . . END=6214739 GT:DP:GQ:MIN_DP:PL 0/0:5:9:5:0,9,135 1 6214740 . G C, 101.03 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PL:SB 1/1:4:12:129,12,0,129,12,129:0,0,0,4 1 6214741 . G . . END=6214750 GT:DP:GQ:MIN_DP:PL 0/0:4:9:3:0,9,91 1 6214751 . G . . END=6214752 GT:DP:GQ:MIN_DP:PL 0/0:3:8:3:0,9,89 1 6214753 . A . . END=6214755 GT:DP:GQ:MIN_DP:PL 0/0:3:9:3:0,9,108 1 6214756 . C . . END=6214756 GT:DP:GQ:MIN_DP:PL 0/0:3:8:3:0,9,79 1 6214757 . G . . END=6214758 GT:DP:GQ:MIN_DP:PL 0/0:3:9:3:0,9,110 --[ errorlogs/3342_22_191_spleen_ACGTATCA_tR1-mduprabq-dpfix-wi-grep.log ]-- 1 3421833 . T . . END=3421838 GT:DP:GQ:MIN_DP:PL 0/0:13:39:13:0,39,392 1 3421839 . C . . END=3421841 GT:DP:GQ:MIN_DP:PL 0/0:14:42:14:0,42,424 1 3421842 . C . . END=3421846 GT:DP:GQ:MIN_DP:PL 0/0:14:39:14:0,39,585 1 3421847 . G . . END=3421847 GT:DP:GQ:MIN_DP:PL 0/0:15:42:15:0,42,630 1 3421848 . C . . END=3421848 GT:DP:GQ:MIN_DP:PL 0/0:15:33:15:0,33,495 1 3421849 . C T, 421.77 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PL:SB 1/1:14:42:450,42,0,450,42,450:0,0,7,7 1 3421850 . G . . END=3421850 GT:DP:GQ:MIN_DP:PL 0/0:15:39:15:0,39,585 1 3421851 . C . . END=3421858 GT:DP:GQ:MIN_DP:PL 0/0:14:33:14:0,33,495 1 3421859 . A . . END=3421865 GT:DP:GQ:MIN_DP:PL 0/0:13:30:11:0,30,450 1 3421866 . C . . END=3421875 GT:DP:GQ:MIN_DP:PL 0/0:10:27:10:0,27,405 1 3421876 . T . . END=3421895 GT:DP:GQ:MIN_DP:PL 0/0:10:30:10:0,30,314 --[ errorlogs/3342_22_191_spleen_ACGTATCA_tR1-mduprabq-dpfix-woi-grep.log ]-- 1 6214725 . C . . END=6214725 GT:DP:GQ:MIN_DP:PL 0/0:8:23:8:0,24,236 1 6214726 . G . . END=6214726 GT:DP:GQ:MIN_DP:PL 0/0:8:24:8:0,24,265 1 6214727 . G . . END=6214728 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,315 1 6214729 . C . . END=6214730 GT:DP:GQ:MIN_DP:PL 0/0:8:18:8:0,18,270 1 6214731 . G . . END=6214739 GT:DP:GQ:MIN_DP:PL 0/0:9:21:8:0,21,315 1 6214740 . G C, 222.78 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PL:SB 1/1:8:24:251,24,0,251,24,251:0,0,1,7 1 6214741 . G . . END=6214753 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,228 1 6214754 . G . . END=6214754 GT:DP:GQ:MIN_DP:PL 0/0:7:18:7:0,18,270 1 6214755 . C . . END=6214767 GT:DP:GQ:MIN_DP:PL 0/0:8:21:7:0,21,242 1 6214768 . G . . END=6214768 GT:DP:GQ:MIN_DP:PL 0/0:7:2:7:0,2,199 1 6214769 . C . . END=6214769 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,260 --[ errorlogs/3342_27_14MCB106-1_AGTCACTA_tR1-mduprabq-dpfix-wi-grep.log ]-- 1 3421630 . C . . END=3421631 GT:DP:GQ:MIN_DP:PL 0/0:15:39:15:0,39,585 1 3421632 . G . . END=3421636 GT:DP:GQ:MIN_DP:PL 0/0:15:36:14:0,36,540 1 3421637 . C . . END=3421639 GT:DP:GQ:MIN_DP:PL 0/0:15:39:14:0,39,585 1 3421640 . T . . END=3421640 GT:DP:GQ:MIN_DP:PL 0/0:14:20:14:0,20,415 1 3421641 . G . . END=3421649 GT:DP:GQ:MIN_DP:PL 0/0:13:36:13:0,36,540 1 3421650 . T C, 448.77 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PL:SB 1/1:13:39:477,39,0,477,39,477:0,0,11,2 1 3421651 . A . . END=3421655 GT:DP:GQ:MIN_DP:PL 0/0:12:36:12:0,36,393 1 3421656 . T . . END=3421658 GT:DP:GQ:MIN_DP:PL 0/0:12:33:12:0,33,495 1 3421659 . C . . END=3421659 GT:DP:GQ:MIN_DP:PL 0/0:14:39:14:0,39,585 1 3421660 . C . . END=3421662 GT:DP:GQ:MIN_DP:PL 0/0:16:45:16:0,45,675 1 3421663 . T . . END=3421664 GT:DP:GQ:MIN_DP:PL 0/0:17:48:17:0,48,720 --[ errorlogs/3342_27_14MCB106-1_AGTCACTA_tR1-mduprabq-dpfix-woi-grep.log ]-- 1 5019245 . A . . END=5019245 GT:DP:GQ:MIN_DP:PL 0/0:30:36:30:0,36,540 1 5019246 . G . . END=5019246 GT:DP:GQ:MIN_DP:PL 0/0:31:30:31:0,30,450 1 5019247 . G . . END=5019249 GT:DP:GQ:MIN_DP:PL 0/0:30:27:30:0,27,405 1 5019250 . T . . END=5019250 GT:DP:GQ:MIN_DP:PL 0/0:29:24:29:0,24,360 1 5019251 . T . . END=5019251 GT:DP:GQ:MIN_DP:PL 0/0:28:6:28:0,6,90 1 5019252 . CGG C, 145.79 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PL:SB 1/1:6:19:183,19,0,183,19,183:0,0,5,1 1 5019255 . G . . END=5019255 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,473 1 5019256 . G . . END=5019256 GT:DP:GQ:MIN_DP:PL 0/0:22:33:22:0,33,677 1 5019257 . G . . END=5019257 GT:DP:GQ:MIN_DP:PL 0/0:22:39:22:0,39,585 1 5019258 . G . . END=5019258 GT:DP:GQ:MIN_DP:PL 0/0:23:42:23:0,42,630 1 5019259 . G . . END=5019259 GT:DP:GQ:MIN_DP:PL 0/0:24:48:24:0,48,720 --[ errorlogs/3342_28_14MCB135-1_ATCCTGTA_tR1-mduprabq-dpfix-wi-grep.log ]-- 1 3421640 . T . . END=3421642 GT:DP:GQ:MIN_DP:PL 0/0:17:42:17:0,42,630 1 3421643 . C . . END=3421643 GT:DP:GQ:MIN_DP:PL 0/0:19:48:19:0,48,720 1 3421644 . A . . END=3421645 GT:DP:GQ:MIN_DP:PL 0/0:20:51:20:0,51,765 1 3421646 . G . . END=3421646 GT:DP:GQ:MIN_DP:PL 0/0:20:48:20:0,48,720 1 3421647 . T . . END=3421649 GT:DP:GQ:MIN_DP:PL 0/0:20:51:20:0,51,765 1 3421650 . T C, 590.77 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PL:SB 1/1:19:57:619,57,0,619,57,619:0,0,14,5 1 3421651 . A . . END=3421655 GT:DP:GQ:MIN_DP:PL 0/0:18:51:18:0,51,765 1 3421656 . T . . END=3421656 GT:DP:GQ:MIN_DP:PL 0/0:17:50:17:0,51,500 1 3421657 . A . . END=3421659 GT:DP:GQ:MIN_DP:PL 0/0:17:51:17:0,51,519 1 3421660 . C . . END=3421661 GT:DP:GQ:MIN_DP:PL 0/0:17:45:17:0,45,675 1 3421662 . A . . END=3421662 GT:DP:GQ:MIN_DP:PL 0/0:18:48:18:0,48,720 --[ errorlogs/3342_28_14MCB135-1_ATCCTGTA_tR1-mduprabq-dpfix-woi-grep.log ]-- 1 5019242 . T . . END=5019242 GT:DP:GQ:MIN_DP:PL 0/0:27:27:27:0,27,405 1 5019243 . C . . END=5019243 GT:DP:GQ:MIN_DP:PL 0/0:27:24:27:0,24,360 1 5019244 . C . . END=5019245 GT:DP:GQ:MIN_DP:PL 0/0:27:18:27:0,18,270 1 5019246 . G . . END=5019248 GT:DP:GQ:MIN_DP:PL 0/0:27:15:27:0,15,225 1 5019249 . C . . END=5019251 GT:DP:GQ:MIN_DP:PL 0/0:28:6:27:0,6,90 1 5019252 . CGGG C, 190.73 . ClippingRankSum=0.135;MLEAC=1,0;MLEAF=0.500,0.00 GT:DP:GQ:PL:SB 0/1:12:92:228,0,92,243,113,356:0,5,7,0 1 5019256 . G . . END=5019257 GT:DP:GQ:MIN_DP:PL 0/0:18:0:17:0,0,188 1 5019258 . G . . END=5019258 GT:DP:GQ:MIN_DP:PL 0/0:18:48:18:0,48,720 1 5019259 . G . . END=5019259 GT:DP:GQ:MIN_DP:PL 0/0:21:57:21:0,57,855 1 5019260 . G . . END=5019261 GT:DP:GQ:MIN_DP:PL 0/0:21:54:21:0,54,810 1 5019262 . G . . END=5019262 GT:DP:GQ:MIN_DP:PL 0/0:22:57:22:0,57,855 --[ errorlogs/3342_29_14MCB156-2_ATTGAGGA_tR1-mduprabq-dpfix-wi-grep.log ]-- 1 3421632 . G . . END=3421639 GT:DP:GQ:MIN_DP:PL 0/0:10:24:10:0,24,360 1 3421640 . T . . END=3421640 GT:DP:GQ:MIN_DP:PL 0/0:10:21:10:0,21,315 1 3421641 . G . . END=3421644 GT:DP:GQ:MIN_DP:PL 0/0:11:24:10:0,24,360 1 3421645 . T . . END=3421647 GT:DP:GQ:MIN_DP:PL 0/0:10:27:10:0,27,405 1 3421648 . G . . END=3421649 GT:DP:GQ:MIN_DP:PL 0/0:11:30:11:0,30,450 1 3421650 . T C, 356.77 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PL:SB 1/1:11:33:385,33,0,385,33,385:0,0,11,0 1 3421651 . A . . END=3421656 GT:DP:GQ:MIN_DP:PL 0/0:10:30:10:0,30,324 1 3421657 . A . . END=3421658 GT:DP:GQ:MIN_DP:PL 0/0:11:33:11:0,33,359 1 3421659 . C . . END=3421660 GT:DP:GQ:MIN_DP:PL 0/0:12:36:12:0,36,423 1 3421661 . A . . END=3421665 GT:DP:GQ:MIN_DP:PL 0/0:13:39:13:0,39,435 1 3421666 . C . . END=3421669 GT:DP:GQ:MIN_DP:PL 0/0:14:42:14:0,42,505 --[ errorlogs/3342_29_14MCB156-2_ATTGAGGA_tR1-mduprabq-dpfix-woi-grep.log ]-- 1 5019245 . A . . END=5019245 GT:DP:GQ:MIN_DP:PL 0/0:40:24:40:0,24,360 1 5019246 . G . . END=5019247 GT:DP:GQ:MIN_DP:PL 0/0:41:21:40:0,21,315 1 5019248 . G . . END=5019249 GT:DP:GQ:MIN_DP:PL 0/0:41:24:41:0,24,360 1 5019250 . T . . END=5019250 GT:DP:GQ:MIN_DP:PL 0/0:41:21:41:0,21,315 1 5019251 . T . . END=5019251 GT:DP:GQ:MIN_DP:PL 0/0:41:15:41:0,15,225 1 5019252 . CGGG C, 93.73 . ClippingRankSum=-0.387;MLEAC=1,0;MLEAF=0.500,0.00 GT:DP:GQ:PL:SB 0/1:11:99:131,0,106,146,124,270:0,5,5,1 1 5019256 . G . . END=5019258 GT:DP:GQ:MIN_DP:PL 0/0:20:0:19:0,0,391 1 5019259 . G . . END=5019259 GT:DP:GQ:MIN_DP:PL 0/0:23:54:23:0,54,810 1 5019260 . G . . END=5019263 GT:DP:GQ:MIN_DP:PL 0/0:23:51:22:0,51,765 1 5019264 . G . . END=5019264 GT:DP:GQ:MIN_DP:PL 0/0:23:35:23:0,35,727 1 5019265 . G . . END=5019265 GT:DP:GQ:MIN_DP:PL 0/0:23:50:23:0,50,692 --[ errorlogs/3342_2_14MCB115_AAACATCG_tR1-mduprabq-dpfix-wi-grep.log ]-- 1 3421641 . G . . END=3421643 GT:DP:GQ:MIN_DP:PL 0/0:14:42:14:0,42,456 1 3421644 . A . . END=3421644 GT:DP:GQ:MIN_DP:PL 0/0:16:45:16:0,45,675 1 3421645 . T . . END=3421645 GT:DP:GQ:MIN_DP:PL 0/0:16:25:16:0,25,428 1 3421646 . G . . END=3421648 GT:DP:GQ:MIN_DP:PL 0/0:16:45:16:0,45,675 1 3421649 . A . . END=3421649 GT:DP:GQ:MIN_DP:PL 0/0:17:48:17:0,48,720 1 3421650 . T C, 467.77 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PL:SB 1/1:14:42:496,42,0,496,42,496:0,0,9,5 1 3421651 . A . . END=3421654 GT:DP:GQ:MIN_DP:PL 0/0:18:48:17:0,48,720 1 3421655 . A . . END=3421655 GT:DP:GQ:MIN_DP:PL 0/0:18:51:18:0,51,765 1 3421656 . T . . END=3421660 GT:DP:GQ:MIN_DP:PL 0/0:20:54:19:0,54,810 1 3421661 . A . . END=3421661 GT:DP:GQ:MIN_DP:PL 0/0:21:57:21:0,57,855 1 3421662 . A . . END=3421663 GT:DP:GQ:MIN_DP:PL 0/0:21:54:20:0,54,810 --[ errorlogs/3342_2_14MCB115_AAACATCG_tR1-mduprabq-dpfix-woi-grep.log ]-- 1 6214703 . C . . END=6214703 GT:DP:GQ:MIN_DP:PL 0/0:33:52:33:0,53,1008 1 6214704 . C . . END=6214708 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 1 6214709 . C . . END=6214710 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 1 6214711 . A . . END=6214712 GT:DP:GQ:MIN_DP:PL 0/0:31:72:31:0,72,1080 1 6214713 . C . . END=6214739 GT:DP:GQ:MIN_DP:PL 0/0:26:63:20:0,60,708 1 6214740 . G C, 607.77 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PL:SB 1/1:20:60:636,60,0,636,60,636:0,0,2,18 1 6214741 . G . . END=6214742 GT:DP:GQ:MIN_DP:PL 0/0:20:60:20:0,60,638 1 6214743 . C . . END=6214743 GT:DP:GQ:MIN_DP:PL 0/0:20:54:20:0,54,810 1 6214744 . C . . END=6214744 GT:DP:GQ:MIN_DP:PL 0/0:20:34:20:0,34,635 1 6214745 . C . . END=6214745 GT:DP:GQ:MIN_DP:PL 0/0:21:31:21:0,31,674 1 6214746 . C . . END=6214753 GT:DP:GQ:MIN_DP:PL 0/0:21:57:19:0,57,659 --[ errorlogs/3342_30_14MCB157-1_CAACCACA_tR1-mduprabq-dpfix-wi-grep.log ]-- 1 3421590 . C . . END=3421602 GT:DP:GQ:MIN_DP:PL 0/0:6:15:5:0,15,174 1 3421603 . A . . END=3421605 GT:DP:GQ:MIN_DP:PL 0/0:5:12:5:0,12,180 1 3421606 . G . . END=3421628 GT:DP:GQ:MIN_DP:PL 0/0:3:9:3:0,9,101 1 3421629 . A . . END=3421642 GT:DP:GQ:MIN_DP:PL 0/0:4:12:4:0,12,135 1 3421643 . C . . END=3421649 GT:DP:GQ:MIN_DP:PL 0/0:5:15:5:0,15,168 1 3421650 . T C, 157.90 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PL:SB 1/1:5:15:186,15,0,186,15,186:0,0,4,1 1 3421651 . A . . END=3421653 GT:DP:GQ:MIN_DP:PL 0/0:5:15:5:0,15,166 1 3421654 . A . . END=3421657 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,199 1 3421658 . G . . END=3421658 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,259 1 3421659 . C . . END=3421663 GT:DP:GQ:MIN_DP:PL 0/0:8:24:8:0,24,270 1 3421664 . C . . END=3421667 GT:DP:GQ:MIN_DP:PL 0/0:9:27:9:0,27,322 --[ errorlogs/3342_30_14MCB157-1_CAACCACA_tR1-mduprabq-dpfix-woi-grep.log ]-- 1 5019230 . T . . END=5019240 GT:DP:GQ:MIN_DP:PL 0/0:14:39:14:0,39,585 1 5019241 . G . . END=5019241 GT:DP:GQ:MIN_DP:PL 0/0:14:36:14:0,36,540 1 5019242 . T . . END=5019245 GT:DP:GQ:MIN_DP:PL 0/0:16:9:14:0,9,135 1 5019246 . G . . END=5019250 GT:DP:GQ:MIN_DP:PL 0/0:17:6:17:0,6,90 1 5019251 . T . . END=5019251 GT:DP:GQ:MIN_DP:PL 0/0:17:0:17:0,0,0 1 5019252 . CGG C, 119.52 . ClippingRankSum=0.736;MLEAC=1,0;MLEAF=0.500,0.00 GT:DP:GQ:PL:SB 0/1:6:7:156,0,7,159,23,181:0,1,3,2 1 5019255 . G . . END=5019255 GT:DP:GQ:MIN_DP:PL 0/0:8:0:8:0,0,151 1 5019256 . G . . END=5019256 GT:DP:GQ:MIN_DP:PL 0/0:9:21:9:0,21,315 1 5019257 . G . . END=5019258 GT:DP:GQ:MIN_DP:PL 0/0:11:27:11:0,27,405 1 5019259 . G . . END=5019259 GT:DP:GQ:MIN_DP:PL 0/0:12:33:12:0,33,495 1 5019260 . G . . END=5019262 GT:DP:GQ:MIN_DP:PL 0/0:12:30:12:0,30,450 --[ errorlogs/3342_31_14MCB165-1_CAAGACTA_tR1-mduprabq-dpfix-wi-grep.log ]-- 1 3216009 . G . . END=3216011 GT:DP:GQ:MIN_DP:PL 0/0:30:84:30:0,81,1215 1 3216012 . T . . END=3216016 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 1 3216017 . G . . END=3216018 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 1 3216019 . A . . END=3216019 GT:DP:GQ:MIN_DP:PL 0/0:35:67:35:0,67,981 1 3216020 . T . . END=3216741 GT:DP:GQ:MIN_DP:PL 0/0:63:99:35:0,102,1530 1 3216742 . G T, 1902.77 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PL:SB 1/1:62:99:1931,185,0,1931,185,1931:0,0,18,44 1 3216743 . A . . END=3216872 GT:DP:GQ:MIN_DP:PL 0/0:56:99:41:0,99,1485 1 3216873 . T . . END=3216873 GT:DP:GQ:MIN_DP:PL 0/0:41:93:41:0,93,1395 1 3216874 . G . . END=3216874 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,99,1485 1 3216875 . A . . END=3216876 GT:DP:GQ:MIN_DP:PL 0/0:41:96:41:0,96,1440 1 3216877 . G . . END=3216877 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,99,1485 --[ errorlogs/3342_31_14MCB165-1_CAAGACTA_tR1-mduprabq-dpfix-woi-grep.log ]-- 1 10003103 . A . . END=10003104 GT:DP:GQ:MIN_DP:PL 0/0:28:78:28:0,78,1170 1 10003105 . G . . END=10003107 GT:DP:GQ:MIN_DP:PL 0/0:30:84:29:0,81,1215 1 10003108 . A . . END=10003110 GT:DP:GQ:MIN_DP:PL 0/0:34:93:33:0,90,1350 1 10003111 . A . . END=10003115 GT:DP:GQ:MIN_DP:PL 0/0:33:87:32:0,87,1305 1 10003116 . T . . END=10003136 GT:DP:GQ:MIN_DP:PL 0/0:32:93:31:0,90,1016 1 10003137 . T C, 1192.77 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PL:SB 1/1:35:99:1221,104,0,1221,104,1221:0,0,35,0 1 10003138 . G . . END=10003270 GT:DP:GQ:MIN_DP:PL 0/0:47:99:36:0,102,1530 1 10003271 . T . . END=10003271 GT:DP:GQ:MIN_DP:PL 0/0:48:94:48:0,95,1491 1 10003272 . G . . END=10003425 GT:DP:GQ:MIN_DP:PL 0/0:58:99:40:0,99,1429 1 10003426 . C . . END=10003426 GT:DP:GQ:MIN_DP:PL 0/0:39:80:39:0,81,1367 1 10003427 . T . . END=10003428 GT:DP:GQ:MIN_DP:PL 0/0:38:79:37:0,75,1146 --[ errorlogs/3342_32_14MCB205-1_CAATGGAA_tR1-mduprabq-dpfix-wi-grep.log ]-- 1 3421629 . A . . END=3421631 GT:DP:GQ:MIN_DP:PL 0/0:11:30:11:0,30,450 1 3421632 . G . . END=3421637 GT:DP:GQ:MIN_DP:PL 0/0:10:27:10:0,27,405 1 3421638 . T . . END=3421639 GT:DP:GQ:MIN_DP:PL 0/0:10:24:10:0,24,360 1 3421640 . T . . END=3421643 GT:DP:GQ:MIN_DP:PL 0/0:11:27:11:0,27,405 1 3421644 . A . . END=3421649 GT:DP:GQ:MIN_DP:PL 0/0:11:30:10:0,30,332 1 3421650 . T C, 332.77 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PL:SB 1/1:10:30:361,30,0,361,30,361:0,0,9,1 1 3421651 . A . . END=3421651 GT:DP:GQ:MIN_DP:PL 0/0:10:30:10:0,30,349 1 3421652 . T . . END=3421652 GT:DP:GQ:MIN_DP:PL 0/0:11:33:11:0,33,353 1 3421653 . A . . END=3421653 GT:DP:GQ:MIN_DP:PL 0/0:11:32:11:0,33,343 1 3421654 . A . . END=3421655 GT:DP:GQ:MIN_DP:PL 0/0:11:30:11:0,30,450 1 3421656 . T . . END=3421659 GT:DP:GQ:MIN_DP:PL 0/0:11:27:11:0,27,405 --[ errorlogs/3342_32_14MCB205-1_CAATGGAA_tR1-mduprabq-dpfix-woi-grep.log ]-- 1 9545578 . G . . END=9545580 GT:DP:GQ:MIN_DP:PL 0/0:5:15:5:0,15,157 1 9545581 . A . . END=9545581 GT:DP:GQ:MIN_DP:PL 0/0:5:14:5:0,15,143 1 9545582 . A . . END=9545583 GT:DP:GQ:MIN_DP:PL 0/0:5:12:5:0,12,180 1 9545584 . C . . END=9545586 GT:DP:GQ:MIN_DP:PL 0/0:6:15:6:0,15,225 1 9545587 . C . . END=9545596 GT:DP:GQ:MIN_DP:PL 0/0:6:12:5:0,12,180 1 9545597 . C T, 43.77 . ClippingRankSum=1.026;MLEAC=1,0;MLEAF=0.500,0.00 GT:DP:GQ:PGT:PID:PL:SB 0/1:4:72:0|1:9545577_G_A:72,0,186,84,192,276:1,1,2,0 1 9545598 . G . . END=9545598 GT:DP:GQ:MIN_DP:PL 0/0:4:12:4:0,12,125 1 9545599 . G . . END=9545603 GT:DP:GQ:MIN_DP:PL 0/0:5:15:5:0,15,150 1 9545604 . C . . END=9545612 GT:DP:GQ:MIN_DP:PL 0/0:5:12:5:0,12,180 1 9545613 . G . . END=9545620 GT:DP:GQ:MIN_DP:PL 0/0:5:15:5:0,15,172 1 9545621 . A T, 80.77 . ClippingRankSum=-0.358;MLEAC=1,0;MLEAF=0.500,0.00 GT:DP:GQ:PGT:PID:PL:SB 0/1:5:99:0|1:9545577_G_A:109,0,108,115,117,232:0,2,3,0 --[ errorlogs/3342_34_14MCB228-2_CAGCGTTA_tR1-mduprabq-dpfix-wi-grep.log ]-- 1 3421623 . A . . END=3421623 GT:DP:GQ:MIN_DP:PL 0/0:17:48:17:0,48,720 1 3421624 . G . . END=3421628 GT:DP:GQ:MIN_DP:PL 0/0:18:51:17:0,51,582 1 3421629 . A . . END=3421630 GT:DP:GQ:MIN_DP:PL 0/0:18:54:18:0,54,611 1 3421631 . A . . END=3421632 GT:DP:GQ:MIN_DP:PL 0/0:19:57:19:0,57,649 1 3421633 . G . . END=3421649 GT:DP:GQ:MIN_DP:PL 0/0:21:63:21:0,60,674 1 3421650 . T C, 814.77 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PL:SB 1/1:26:77:843,77,0,843,77,843:0,0,21,5 1 3421651 . A . . END=3421656 GT:DP:GQ:MIN_DP:PL 0/0:26:72:24:0,72,770 1 3421657 . A . . END=3421718 GT:DP:GQ:MIN_DP:PL 0/0:24:63:22:0,60,682 1 3421719 . C . . END=3421719 GT:DP:GQ:MIN_DP:PL 0/0:26:57:26:0,57,855 1 3421720 . T . . END=3421737 GT:DP:GQ:MIN_DP:PL 0/0:25:63:22:0,60,900 1 3421738 . T . . END=3421739 GT:DP:GQ:MIN_DP:PL 0/0:24:54:24:0,54,810 --[ errorlogs/3342_34_14MCB228-2_CAGCGTTA_tR1-mduprabq-dpfix-woi-grep.log ]-- 1 10003100 . A . . END=10003106 GT:DP:GQ:MIN_DP:PL 0/0:31:87:30:0,84,1260 1 10003107 . T . . END=10003115 GT:DP:GQ:MIN_DP:PL 0/0:36:93:33:0,90,1350 1 10003116 . T . . END=10003117 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,99,1485 1 10003118 . T . . END=10003121 GT:DP:GQ:MIN_DP:PL 0/0:37:93:36:0,90,1350 1 10003122 . G . . END=10003136 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 1 10003137 . T C, 1312.77 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PL:SB 1/1:37:99:1341,111,0,1341,111,1341:0,0,35,2 1 10003138 . G . . END=10003451 GT:DP:GQ:MIN_DP:PL 0/0:64:99:37:0,99,1324 1 10003452 . A . . END=10003452 GT:DP:GQ:MIN_DP:PL 0/0:42:93:42:0,93,1395 1 10003453 . G . . END=10003453 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,99,1485 1 10003454 . C . . END=10003455 GT:DP:GQ:MIN_DP:PL 0/0:43:90:43:0,90,1350 1 10003456 . G . . END=10003461 GT:DP:GQ:MIN_DP:PL 0/0:39:87:36:0,84,1260 --[ errorlogs/3342_35_13MCB012-1_CATACCAA_tR1-mduprabq-dpfix-wi-grep.log ]-- 1 3421631 . A . . END=3421635 GT:DP:GQ:MIN_DP:PL 0/0:9:27:9:0,27,316 1 3421636 . T . . END=3421636 GT:DP:GQ:MIN_DP:PL 0/0:10:30:10:0,30,337 1 3421637 . C . . END=3421639 GT:DP:GQ:MIN_DP:PL 0/0:10:27:10:0,27,405 1 3421640 . T . . END=3421644 GT:DP:GQ:MIN_DP:PL 0/0:10:24:10:0,24,360 1 3421645 . T . . END=3421649 GT:DP:GQ:MIN_DP:PL 0/0:10:27:10:0,27,405 1 3421650 . T C, 320.77 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PL:SB 1/1:11:33:349,33,0,349,33,349:0,0,9,2 1 3421651 . A . . END=3421651 GT:DP:GQ:MIN_DP:PL 0/0:11:30:11:0,30,450 1 3421652 . T . . END=3421656 GT:DP:GQ:MIN_DP:PL 0/0:11:33:11:0,33,343 1 3421657 . A . . END=3421658 GT:DP:GQ:MIN_DP:PL 0/0:12:36:12:0,36,385 1 3421659 . C . . END=3421659 GT:DP:GQ:MIN_DP:PL 0/0:12:14:12:0,14,351 1 3421660 . C . . END=3421661 GT:DP:GQ:MIN_DP:PL 0/0:12:36:12:0,36,400 --[ errorlogs/3342_35_13MCB012-1_CATACCAA_tR1-mduprabq-dpfix-woi-grep.log ]-- 1 5019244 . C . . END=5019246 GT:DP:GQ:MIN_DP:PL 0/0:17:21:16:0,21,315 1 5019247 . G . . END=5019247 GT:DP:GQ:MIN_DP:PL 0/0:17:18:17:0,18,270 1 5019248 . G . . END=5019249 GT:DP:GQ:MIN_DP:PL 0/0:17:15:17:0,15,225 1 5019250 . T . . END=5019250 GT:DP:GQ:MIN_DP:PL 0/0:17:12:17:0,12,180 1 5019251 . T . . END=5019251 GT:DP:GQ:MIN_DP:PL 0/0:17:6:17:0,6,90 1 5019252 . CGG C, 31.73 . ClippingRankSum=0.000;MLEAC=1,0;MLEAF=0.500,0.00 GT:DP:GQ:PGT:PID:PL:SB 0/1:4:69:0|1:5019252_CGG_C:69,0,179,84,186,270:0,2,2,0 1 5019255 . G . . END=5019256 GT:DP:GQ:MIN_DP:PL 0/0:14:0:12:0,0,0 1 5019257 . G . . END=5019257 GT:DP:GQ:MIN_DP:PL 0/0:15:12:15:0,12,436 1 5019258 . G . . END=5019258 GT:DP:GQ:MIN_DP:PL 0/0:15:39:15:0,39,585 1 5019259 . G . . END=5019259 GT:DP:GQ:MIN_DP:PL 0/0:17:45:17:0,45,675 1 5019260 . G . . END=5019262 GT:DP:GQ:MIN_DP:PL 0/0:17:39:17:0,39,585 --[ errorlogs/3342_36_13MCB017-3_CCAGTTCA_tR1-mduprabq-dpfix-wi-grep.log ]-- 1 3421639 . T . . END=3421643 GT:DP:GQ:MIN_DP:PL 0/0:11:27:11:0,27,405 1 3421644 . A . . END=3421645 GT:DP:GQ:MIN_DP:PL 0/0:12:30:12:0,30,450 1 3421646 . G . . END=3421646 GT:DP:GQ:MIN_DP:PL 0/0:12:27:12:0,27,405 1 3421647 . T . . END=3421647 GT:DP:GQ:MIN_DP:PL 0/0:12:21:12:0,21,315 1 3421648 . G . . END=3421649 GT:DP:GQ:MIN_DP:PL 0/0:12:24:12:0,24,360 1 3421650 . T C, 399.77 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PL:SB 1/1:12:36:428,36,0,428,36,428:0,0,10,2 1 3421651 . A . . END=3421651 GT:DP:GQ:MIN_DP:PL 0/0:13:27:13:0,27,405 1 3421652 . T . . END=3421655 GT:DP:GQ:MIN_DP:PL 0/0:14:30:14:0,30,450 1 3421656 . T . . END=3421656 GT:DP:GQ:MIN_DP:PL 0/0:14:33:14:0,33,495 1 3421657 . A . . END=3421657 GT:DP:GQ:MIN_DP:PL 0/0:14:36:14:0,36,540 1 3421658 . G . . END=3421658 GT:DP:GQ:MIN_DP:PL 0/0:13:12:13:0,12,402 --[ errorlogs/3342_36_13MCB017-3_CCAGTTCA_tR1-mduprabq-dpfix-woi-grep.log ]-- 1 9545546 . A . . END=9545547 GT:DP:GQ:MIN_DP:PL 0/0:3:6:2:0,6,76 1 9545548 . C . . END=9545548 GT:DP:GQ:MIN_DP:PL 0/0:2:0:2:0,0,0 1 9545549 . T . . END=9545564 GT:DP:GQ:MIN_DP:PL 0/0:2:6:2:0,6,68 1 9545565 . G . . END=9545566 GT:DP:GQ:MIN_DP:PL 0/0:2:3:2:0,3,45 1 9545567 . A . . END=9545576 GT:DP:GQ:MIN_DP:PL 0/0:3:6:3:0,6,90 1 9545577 . G A, 63.56 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PGT:PID:PL:SB 1/1:2:6:0|1:9545577_G_A:90,6,0,90,6,90:0,0,1,1 1 9545578 . G . . END=9545586 GT:DP:GQ:MIN_DP:PL 0/0:2:6:2:0,6,70 1 9545587 . C . . END=9545588 GT:DP:GQ:MIN_DP:PL 0/0:3:9:3:0,9,107 1 9545589 . G . . END=9545596 GT:DP:GQ:MIN_DP:PL 0/0:3:6:3:0,6,90 1 9545597 . C T, 97.18 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PGT:PID:PL:SB 1/1:3:9:0|1:9545577_G_A:124,9,0,124,9,124:0,0,2,1 1 9545598 . G . . END=9545607 GT:DP:GQ:MIN_DP:PL 0/0:2:6:2:0,6,70 --[ errorlogs/3342_37_13MCB138-1_CCGAAGTA_tR1-mduprabq-dpfix-wi-grep.log ]-- 1 3421632 . G . . END=3421634 GT:DP:GQ:MIN_DP:PL 0/0:11:30:11:0,30,450 1 3421635 . A . . END=3421635 GT:DP:GQ:MIN_DP:PL 0/0:12:33:12:0,33,495 1 3421636 . T . . END=3421637 GT:DP:GQ:MIN_DP:PL 0/0:13:36:13:0,36,540 1 3421638 . T . . END=3421648 GT:DP:GQ:MIN_DP:PL 0/0:14:39:13:0,39,438 1 3421649 . A . . END=3421649 GT:DP:GQ:MIN_DP:PL 0/0:15:42:15:0,42,630 1 3421650 . T C, 481.77 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PL:SB 1/1:15:45:510,45,0,510,45,510:0,0,14,1 1 3421651 . A . . END=3421651 GT:DP:GQ:MIN_DP:PL 0/0:15:42:15:0,42,630 1 3421652 . T . . END=3421653 GT:DP:GQ:MIN_DP:PL 0/0:16:45:16:0,45,675 1 3421654 . A . . END=3421655 GT:DP:GQ:MIN_DP:PL 0/0:17:48:17:0,48,720 1 3421656 . T . . END=3421662 GT:DP:GQ:MIN_DP:PL 0/0:17:51:17:0,51,544 1 3421663 . T . . END=3421663 GT:DP:GQ:MIN_DP:PL 0/0:17:50:17:0,51,533 --[ errorlogs/3342_37_13MCB138-1_CCGAAGTA_tR1-mduprabq-dpfix-woi-grep.log ]-- 1 6214701 . A . . END=6214720 GT:DP:GQ:MIN_DP:PL 0/0:27:75:26:0,75,944 1 6214721 . G . . END=6214726 GT:DP:GQ:MIN_DP:PL 0/0:27:66:27:0,60,763 1 6214727 . G . . END=6214728 GT:DP:GQ:MIN_DP:PL 0/0:29:72:28:0,72,1080 1 6214729 . C . . END=6214735 GT:DP:GQ:MIN_DP:PL 0/0:26:66:25:0,63,945 1 6214736 . C . . END=6214739 GT:DP:GQ:MIN_DP:PL 0/0:26:54:26:0,54,810 1 6214740 . G C, 705.77 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PL:SB 1/1:24:71:734,71,0,734,71,734:0,0,0,24 1 6214741 . G . . END=6214744 GT:DP:GQ:MIN_DP:PL 0/0:24:57:24:0,57,855 1 6214745 . C . . END=6214746 GT:DP:GQ:MIN_DP:PL 0/0:24:51:24:0,51,765 1 6214747 . G . . END=6214753 GT:DP:GQ:MIN_DP:PL 0/0:20:54:20:0,54,810 1 6214754 . G . . END=6214756 GT:DP:GQ:MIN_DP:PL 0/0:20:48:20:0,48,720 1 6214757 . G . . END=6214759 GT:DP:GQ:MIN_DP:PL 0/0:18:45:18:0,45,675 --[ errorlogs/3342_38_14MCB086-3_CCGTGAGA_tR1-mduprabq-dpfix-wi-grep.log ]-- 1 3421629 . A . . END=3421630 GT:DP:GQ:MIN_DP:PL 0/0:15:45:15:0,45,516 1 3421631 . A . . END=3421631 GT:DP:GQ:MIN_DP:PL 0/0:16:48:16:0,48,568 1 3421632 . G . . END=3421638 GT:DP:GQ:MIN_DP:PL 0/0:16:45:16:0,45,675 1 3421639 . T . . END=3421647 GT:DP:GQ:MIN_DP:PL 0/0:16:48:16:0,48,534 1 3421648 . G . . END=3421649 GT:DP:GQ:MIN_DP:PL 0/0:16:45:16:0,45,675 1 3421650 . T C, 547.77 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PL:SB 1/1:16:48:576,48,0,576,48,576:0,0,14,2 1 3421651 . A . . END=3421655 GT:DP:GQ:MIN_DP:PL 0/0:17:48:17:0,48,720 1 3421656 . T . . END=3421656 GT:DP:GQ:MIN_DP:PL 0/0:18:51:18:0,51,765 1 3421657 . A . . END=3421658 GT:DP:GQ:MIN_DP:PL 0/0:19:54:19:0,54,810 1 3421659 . C . . END=3421665 GT:DP:GQ:MIN_DP:PL 0/0:19:57:19:0,57,625 1 3421666 . C . . END=3421678 GT:DP:GQ:MIN_DP:PL 0/0:23:60:22:0,60,900 --[ errorlogs/3342_38_14MCB086-3_CCGTGAGA_tR1-mduprabq-dpfix-woi-grep.log ]-- 1 10003120 . T . . END=10003125 GT:DP:GQ:MIN_DP:PL 0/0:22:63:21:0,60,690 1 10003126 . T . . END=10003129 GT:DP:GQ:MIN_DP:PL 0/0:22:57:22:0,57,855 1 10003130 . G . . END=10003130 GT:DP:GQ:MIN_DP:PL 0/0:23:60:23:0,60,900 1 10003131 . C . . END=10003131 GT:DP:GQ:MIN_DP:PL 0/0:23:57:23:0,57,855 1 10003132 . C . . END=10003136 GT:DP:GQ:MIN_DP:PL 0/0:25:66:25:0,66,990 1 10003137 . T C, 770.77 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PL:SB 1/1:24:71:799,71,0,799,71,799:0,0,23,1 1 10003138 . G . . END=10003148 GT:DP:GQ:MIN_DP:PL 0/0:24:69:23:0,66,815 1 10003149 . A . . END=10003150 GT:DP:GQ:MIN_DP:PL 0/0:24:72:24:0,72,804 1 10003151 . A . . END=10003151 GT:DP:GQ:MIN_DP:PL 0/0:24:34:24:0,34,721 1 10003152 . G . . END=10003154 GT:DP:GQ:MIN_DP:PL 0/0:25:72:25:0,72,886 1 10003155 . C . . END=10003156 GT:DP:GQ:MIN_DP:PL 0/0:26:69:26:0,69,1035 --[ errorlogs/3342_39_14MCB115-1_CCTCCTGA_tR1-mduprabq-dpfix-wi-grep.log ]-- 1 3216000 . G . . END=3216004 GT:DP:GQ:MIN_DP:PL 0/0:26:66:26:0,66,990 1 3216005 . T . . END=3216005 GT:DP:GQ:MIN_DP:PL 0/0:28:75:28:0,75,1125 1 3216006 . T . . END=3216009 GT:DP:GQ:MIN_DP:PL 0/0:30:84:29:0,84,1260 1 3216010 . G . . END=3216010 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 1 3216011 . C . . END=3216741 GT:DP:GQ:MIN_DP:PL 0/0:70:99:35:0,99,1241 1 3216742 . G T, 1878.77 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PL:SB 1/1:58:99:1907,174,0,1907,174,1907:0,0,13,45 1 3216743 . A . . END=3216896 GT:DP:GQ:MIN_DP:PL 0/0:52:99:38:0,102,1530 1 3216897 . A . . END=3216897 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,99,1227 1 3216898 . G . . END=3216912 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 1 3216913 . C . . END=3216914 GT:DP:GQ:MIN_DP:PL 0/0:37:93:36:0,93,1395 1 3216915 . G . . END=3216916 GT:DP:GQ:MIN_DP:PL 0/0:36:87:36:0,84,1260 --[ errorlogs/3342_39_14MCB115-1_CCTCCTGA_tR1-mduprabq-dpfix-woi-grep.log ]-- 1 10003097 . T . . END=10003108 GT:DP:GQ:MIN_DP:PL 0/0:26:75:26:0,72,1080 1 10003109 . T . . END=10003110 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,1215 1 10003111 . A . . END=10003124 GT:DP:GQ:MIN_DP:PL 0/0:29:75:27:0,75,1125 1 10003125 . C . . END=10003135 GT:DP:GQ:MIN_DP:PL 0/0:28:81:27:0,81,895 1 10003136 . A . . END=10003136 GT:DP:GQ:MIN_DP:PL 0/0:28:78:28:0,78,1170 1 10003137 . T C, 941.77 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PL:SB 1/1:28:84:970,84,0,970,84,970:0,0,26,2 1 10003138 . G . . END=10003142 GT:DP:GQ:MIN_DP:PL 0/0:30:84:29:0,81,1215 1 10003143 . A . . END=10003146 GT:DP:GQ:MIN_DP:PL 0/0:34:93:33:0,90,1350 1 10003147 . A . . END=10003451 GT:DP:GQ:MIN_DP:PL 0/0:59:99:35:0,99,1485 1 10003452 . A . . END=10003460 GT:DP:GQ:MIN_DP:PL 0/0:40:93:36:0,90,1350 1 10003461 . G . . END=10003462 GT:DP:GQ:MIN_DP:PL 0/0:36:87:34:0,87,1305 --[ errorlogs/3342_40_14MCB243-1_CGAACTTA_tR1-mduprabq-dpfix-wi-grep.log ]-- 1 3215956 . T . . END=3215957 GT:DP:GQ:MIN_DP:PL 0/0:27:81:27:0,81,862 1 3215958 . A . . END=3215960 GT:DP:GQ:MIN_DP:PL 0/0:27:78:27:0,78,1170 1 3215961 . T . . END=3215963 GT:DP:GQ:MIN_DP:PL 0/0:29:84:29:0,84,1260 1 3215964 . C . . END=3215966 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 1 3215967 . T . . END=3216741 GT:DP:GQ:MIN_DP:PL 0/0:73:99:33:0,99,1076 1 3216742 . G T, 2116.77 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PL:SB 1/1:67:99:2145,201,0,2145,201,2145:0,0,20,47 1 3216743 . A . . END=3216837 GT:DP:GQ:MIN_DP:PL 0/0:47:99:39:0,102,1401 1 3216838 . A . . END=3216839 GT:DP:GQ:MIN_DP:PL 0/0:40:96:39:0,96,1440 1 3216840 . G . . END=3216840 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,99,1485 1 3216841 . C . . END=3216843 GT:DP:GQ:MIN_DP:PL 0/0:41:96:41:0,96,1440 1 3216844 . G . . END=3216860 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,99,1411 --[ errorlogs/3342_40_14MCB243-1_CGAACTTA_tR1-mduprabq-dpfix-woi-grep.log ]-- 1 10003131 . C . . END=10003131 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 1 10003132 . C . . END=10003132 GT:DP:GQ:MIN_DP:PL 0/0:32:62:32:0,62,1018 1 10003133 . A . . END=10003134 GT:DP:GQ:MIN_DP:PL 0/0:32:84:32:0,84,1260 1 10003135 . T . . END=10003135 GT:DP:GQ:MIN_DP:PL 0/0:32:76:32:0,76,985 1 10003136 . A . . END=10003136 GT:DP:GQ:MIN_DP:PL 0/0:31:81:31:0,81,1215 1 10003137 . T C, 987.77 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PL:SB 1/1:30:90:1016,90,0,1016,90,1016:0,0,28,2 1 10003138 . G . . END=10003139 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 1 10003140 . T . . END=10003149 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 1 10003150 . T . . END=10003156 GT:DP:GQ:MIN_DP:PL 0/0:32:87:30:0,84,1260 1 10003157 . G . . END=10003158 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 1 10003159 . T . . END=10003160 GT:DP:GQ:MIN_DP:PL 0/0:33:87:32:0,87,1305 --[ errorlogs/3342_42_13MCB097-1_CGCATACA_tR1-mduprabq-dpfix-wi-grep.log ]-- 1 3421629 . A . . END=3421631 GT:DP:GQ:MIN_DP:PL 0/0:15:42:15:0,42,630 1 3421632 . G . . END=3421635 GT:DP:GQ:MIN_DP:PL 0/0:15:39:15:0,39,585 1 3421636 . T . . END=3421639 GT:DP:GQ:MIN_DP:PL 0/0:16:42:15:0,42,630 1 3421640 . T . . END=3421644 GT:DP:GQ:MIN_DP:PL 0/0:15:39:15:0,39,585 1 3421645 . T . . END=3421649 GT:DP:GQ:MIN_DP:PL 0/0:17:45:17:0,45,675 1 3421650 . T C, 509.77 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PL:SB 1/1:17:51:538,51,0,538,51,538:0,0,14,3 1 3421651 . A . . END=3421651 GT:DP:GQ:MIN_DP:PL 0/0:18:51:18:0,51,765 1 3421652 . T . . END=3421654 GT:DP:GQ:MIN_DP:PL 0/0:19:57:19:0,57,569 1 3421655 . A . . END=3421662 GT:DP:GQ:MIN_DP:PL 0/0:20:51:19:0,51,765 1 3421663 . T . . END=3421671 GT:DP:GQ:MIN_DP:PL 0/0:19:54:18:0,54,603 1 3421672 . C . . END=3421673 GT:DP:GQ:MIN_DP:PL 0/0:19:57:19:0,57,625 --[ errorlogs/3342_42_13MCB097-1_CGCATACA_tR1-mduprabq-dpfix-woi-grep.log ]-- 1 6214727 . G . . END=6214727 GT:DP:GQ:MIN_DP:PL 0/0:15:30:15:0,30,450 1 6214728 . C . . END=6214734 GT:DP:GQ:MIN_DP:PL 0/0:12:27:12:0,27,405 1 6214735 . A . . END=6214735 GT:DP:GQ:MIN_DP:PL 0/0:12:24:12:0,24,360 1 6214736 . C . . END=6214738 GT:DP:GQ:MIN_DP:PL 0/0:10:21:10:0,21,315 1 6214739 . G . . END=6214739 GT:DP:GQ:MIN_DP:PL 0/0:10:24:10:0,24,360 1 6214740 . G C, 295.77 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PL:SB 1/1:10:30:324,30,0,324,30,324:0,0,0,10 1 6214741 . G . . END=6214742 GT:DP:GQ:MIN_DP:PL 0/0:11:27:11:0,27,405 1 6214743 . C . . END=6214744 GT:DP:GQ:MIN_DP:PL 0/0:11:24:11:0,24,360 1 6214745 . C . . END=6214746 GT:DP:GQ:MIN_DP:PL 0/0:11:18:10:0,18,270 1 6214747 . G . . END=6214750 GT:DP:GQ:MIN_DP:PL 0/0:11:21:10:0,21,315 1 6214751 . G . . END=6214771 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,197 --[ errorlogs/3342_43_13MCB114-3_CTCAATGA_tR1-mduprabq-dpfix-wi-grep.log ]-- 1 3421628 . A . . END=3421630 GT:DP:GQ:MIN_DP:PL 0/0:16:45:16:0,45,675 1 3421631 . A . . END=3421635 GT:DP:GQ:MIN_DP:PL 0/0:15:42:15:0,42,630 1 3421636 . T . . END=3421637 GT:DP:GQ:MIN_DP:PL 0/0:16:45:16:0,45,675 1 3421638 . T . . END=3421641 GT:DP:GQ:MIN_DP:PL 0/0:16:42:15:0,42,630 1 3421642 . G . . END=3421649 GT:DP:GQ:MIN_DP:PL 0/0:16:45:15:0,45,508 1 3421650 . T C, 533.77 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PL:SB 1/1:16:48:562,48,0,562,48,562:0,0,15,1 1 3421651 . A . . END=3421653 GT:DP:GQ:MIN_DP:PL 0/0:16:45:16:0,45,675 1 3421654 . A . . END=3421654 GT:DP:GQ:MIN_DP:PL 0/0:17:48:17:0,48,720 1 3421655 . A . . END=3421656 GT:DP:GQ:MIN_DP:PL 0/0:18:51:18:0,51,765 1 3421657 . A . . END=3421668 GT:DP:GQ:MIN_DP:PL 0/0:19:54:19:0,54,810 1 3421669 . T . . END=3421670 GT:DP:GQ:MIN_DP:PL 0/0:20:57:20:0,57,855 --[ errorlogs/3342_43_13MCB114-3_CTCAATGA_tR1-mduprabq-dpfix-woi-grep.log ]-- 1 5019242 . T . . END=5019243 GT:DP:GQ:MIN_DP:PL 0/0:43:51:43:0,51,765 1 5019244 . C . . END=5019245 GT:DP:GQ:MIN_DP:PL 0/0:43:45:43:0,45,675 1 5019246 . G . . END=5019249 GT:DP:GQ:MIN_DP:PL 0/0:44:33:42:0,33,495 1 5019250 . T . . END=5019250 GT:DP:GQ:MIN_DP:PL 0/0:41:27:41:0,27,405 1 5019251 . T . . END=5019251 GT:DP:GQ:MIN_DP:PL 0/0:41:15:41:0,15,225 1 5019252 . CGG C, 313.73 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PL:SB 1/1:12:36:351,36,0,351,36,351:0,0,8,4 1 5019255 . G . . END=5019256 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,240 1 5019257 . G . . END=5019258 GT:DP:GQ:MIN_DP:PL 0/0:28:60:25:0,60,900 1 5019259 . G . . END=5019259 GT:DP:GQ:MIN_DP:PL 0/0:26:57:26:0,57,855 1 5019260 . G . . END=5019261 GT:DP:GQ:MIN_DP:PL 0/0:27:54:26:0,54,810 1 5019262 . G . . END=5019264 GT:DP:GQ:MIN_DP:PL 0/0:25:51:24:0,51,765 --[ errorlogs/3342_5_14MCB127_ACCACTGT_tR1-mduprabq-dpfix-wi-grep.log ]-- 1 3421640 . T . . END=3421642 GT:DP:GQ:MIN_DP:PL 0/0:6:12:6:0,12,180 1 3421643 . C . . END=3421644 GT:DP:GQ:MIN_DP:PL 0/0:6:9:6:0,9,135 1 3421645 . T . . END=3421646 GT:DP:GQ:MIN_DP:PL 0/0:7:12:6:0,12,180 1 3421647 . T . . END=3421648 GT:DP:GQ:MIN_DP:PL 0/0:7:15:7:0,15,225 1 3421649 . A . . END=3421649 GT:DP:GQ:MIN_DP:PL 0/0:8:18:8:0,18,270 1 3421650 . T C, 221.80 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PL:SB 1/1:7:21:250,21,0,250,21,250:0,0,3,4 1 3421651 . A . . END=3421651 GT:DP:GQ:MIN_DP:PL 0/0:7:18:7:0,18,270 1 3421652 . T . . END=3421653 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,315 1 3421654 . A . . END=3421667 GT:DP:GQ:MIN_DP:PL 0/0:8:24:8:0,24,249 1 3421668 . C . . END=3421672 GT:DP:GQ:MIN_DP:PL 0/0:9:27:9:0,27,298 1 3421673 . A . . END=3421681 GT:DP:GQ:MIN_DP:PL 0/0:11:33:11:0,33,350 --[ errorlogs/3342_5_14MCB127_ACCACTGT_tR1-mduprabq-dpfix-woi-grep.log ]-- 1 6214732 . C . . END=6214732 GT:DP:GQ:MIN_DP:PL 0/0:16:45:16:0,45,675 1 6214733 . G . . END=6214733 GT:DP:GQ:MIN_DP:PL 0/0:17:48:17:0,48,720 1 6214734 . G . . END=6214734 GT:DP:GQ:MIN_DP:PL 0/0:17:45:17:0,45,675 1 6214735 . A . . END=6214735 GT:DP:GQ:MIN_DP:PL 0/0:17:39:17:0,39,585 1 6214736 . C . . END=6214739 GT:DP:GQ:MIN_DP:PL 0/0:16:36:16:0,36,540 1 6214740 . G C, 383.77 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PL:SB 1/1:15:45:412,45,0,412,45,412:0,0,4,11 1 6214741 . G . . END=6214742 GT:DP:GQ:MIN_DP:PL 0/0:16:36:16:0,36,540 1 6214743 . C . . END=6214745 GT:DP:GQ:MIN_DP:PL 0/0:16:30:14:0,30,450 1 6214746 . C . . END=6214746 GT:DP:GQ:MIN_DP:PL 0/0:14:6:14:0,6,354 1 6214747 . G . . END=6214758 GT:DP:GQ:MIN_DP:PL 0/0:12:30:10:0,30,329 1 6214759 . G . . END=6214759 GT:DP:GQ:MIN_DP:PL 0/0:10:29:10:0,30,336 --[ errorlogs/3342_6_14MCB128_ACATTGGC_tR1-mduprabq-dpfix-wi-grep.log ]-- 1 3215993 . T . . END=3215993 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,1215 1 3215994 . T . . END=3215994 GT:DP:GQ:MIN_DP:PL 0/0:29:78:29:0,78,1170 1 3215995 . C . . END=3215995 GT:DP:GQ:MIN_DP:PL 0/0:31:84:31:0,84,1260 1 3215996 . A . . END=3216003 GT:DP:GQ:MIN_DP:PL 0/0:34:96:33:0,90,1350 1 3216004 . A . . END=3216741 GT:DP:GQ:MIN_DP:PL 0/0:54:99:34:0,99,1048 1 3216742 . G T, 1548.77 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PL:SB 1/1:50:99:1577,150,0,1577,150,1577:0,0,16,34 1 3216743 . A . . END=3216745 GT:DP:GQ:MIN_DP:PL 0/0:54:99:53:0,120,1800 1 3216746 . C . . END=3216746 GT:DP:GQ:MIN_DP:PL 0/0:51:88:51:0,89,1701 1 3216747 . A . . END=3216828 GT:DP:GQ:MIN_DP:PL 0/0:49:99:45:0,106,1489 1 3216829 . G . . END=3216829 GT:DP:GQ:MIN_DP:PL 0/0:44:98:44:0,99,1549 1 3216830 . G . . END=3216841 GT:DP:GQ:MIN_DP:PL 0/0:42:99:40:0,101,1278 --[ errorlogs/3342_6_14MCB128_ACATTGGC_tR1-mduprabq-dpfix-woi-grep.log ]-- 1 5019239 . A . . END=5019240 GT:DP:GQ:MIN_DP:PL 0/0:33:81:33:0,81,1215 1 5019241 . G . . END=5019241 GT:DP:GQ:MIN_DP:PL 0/0:33:78:33:0,78,1170 1 5019242 . T . . END=5019243 GT:DP:GQ:MIN_DP:PL 0/0:35:24:34:0,24,360 1 5019244 . C . . END=5019249 GT:DP:GQ:MIN_DP:PL 0/0:35:18:34:0,18,270 1 5019250 . T . . END=5019251 GT:DP:GQ:MIN_DP:PL 0/0:34:12:34:0,12,180 1 5019252 . CGGG C, 223.73 . ClippingRankSum=0.795;MLEAC=1,0;MLEAF=0.500,0.00 GT:DP:GQ:PL:SB 0/1:18:99:261,0,174,287,201,488:2,7,7,2 1 5019256 . G . . END=5019256 GT:DP:GQ:MIN_DP:PL 0/0:23:0:23:0,0,534 1 5019257 . G . . END=5019257 GT:DP:GQ:MIN_DP:PL 0/0:24:57:24:0,57,855 1 5019258 . G . . END=5019258 GT:DP:GQ:MIN_DP:PL 0/0:24:56:24:0,57,778 1 5019259 . G . . END=5019259 GT:DP:GQ:MIN_DP:PL 0/0:24:57:24:0,57,855 1 5019260 . G . . END=5019262 GT:DP:GQ:MIN_DP:PL 0/0:24:54:24:0,54,810 --[ errorlogs/3342_7_14MCB139_CAGATCTG_tR1-mduprabq-dpfix-wi-grep.log ]-- 1 3421632 . G . . END=3421636 GT:DP:GQ:MIN_DP:PL 0/0:11:21:11:0,21,315 1 3421637 . C . . END=3421639 GT:DP:GQ:MIN_DP:PL 0/0:12:24:12:0,24,360 1 3421640 . T . . END=3421645 GT:DP:GQ:MIN_DP:PL 0/0:12:27:9:0,27,304 1 3421646 . G . . END=3421647 GT:DP:GQ:MIN_DP:PL 0/0:11:30:10:0,30,379 1 3421648 . G . . END=3421649 GT:DP:GQ:MIN_DP:PL 0/0:12:33:12:0,33,495 1 3421650 . T C, 411.77 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PL:SB 1/1:12:36:440,36,0,440,36,440:0,0,9,3 1 3421651 . A . . END=3421658 GT:DP:GQ:MIN_DP:PL 0/0:12:33:11:0,33,418 1 3421659 . C . . END=3421663 GT:DP:GQ:MIN_DP:PL 0/0:12:36:12:0,36,402 1 3421664 . C . . END=3421664 GT:DP:GQ:MIN_DP:PL 0/0:13:39:13:0,39,486 1 3421665 . T . . END=3421665 GT:DP:GQ:MIN_DP:PL 0/0:13:36:13:0,36,540 1 3421666 . C . . END=3421669 GT:DP:GQ:MIN_DP:PL 0/0:14:39:14:0,39,585 --[ errorlogs/3342_7_14MCB139_CAGATCTG_tR1-mduprabq-dpfix-woi-grep.log ]-- 1 5019245 . A . . END=5019246 GT:DP:GQ:MIN_DP:PL 0/0:28:24:28:0,24,360 1 5019247 . G . . END=5019247 GT:DP:GQ:MIN_DP:PL 0/0:27:21:27:0,21,315 1 5019248 . G . . END=5019249 GT:DP:GQ:MIN_DP:PL 0/0:26:24:26:0,24,360 1 5019250 . T . . END=5019250 GT:DP:GQ:MIN_DP:PL 0/0:25:21:25:0,21,315 1 5019251 . T . . END=5019251 GT:DP:GQ:MIN_DP:PL 0/0:25:6:25:0,6,90 1 5019252 . CGGG C,CG, 165.73 . ClippingRankSum=-0.318;MLEAC=0,1,0;MLEAF=0.00,0.500,0.00 GT:DP:GQ:PL:SB 0/2:16:60:203,72,206,0,60,205,156,189,131,260:0,7,6,0 1 5019256 . G . . END=5019256 GT:DP:GQ:MIN_DP:PL 0/0:20:0:20:0,0,504 1 5019257 . G . . END=5019257 GT:DP:GQ:MIN_DP:PL 0/0:21:54:21:0,54,810 1 5019258 . G . . END=5019259 GT:DP:GQ:MIN_DP:PL 0/0:22:57:22:0,57,855 1 5019260 . G . . END=5019263 GT:DP:GQ:MIN_DP:PL 0/0:23:48:23:0,48,720 1 5019264 . G . . END=5019264 GT:DP:GQ:MIN_DP:PL 0/0:23:45:23:0,45,675 --[ errorlogs/3342_8_14MCB140_CATCAAGT_tR1-mduprabq-dpfix-wi-grep.log ]-- 1 3216003 . C . . END=3216009 GT:DP:GQ:MIN_DP:PL 0/0:36:96:34:0,90,1350 1 3216010 . G . . END=3216010 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 1 3216011 . C . . END=3216015 GT:DP:GQ:MIN_DP:PL 0/0:36:96:35:0,92,1161 1 3216016 . T . . END=3216016 GT:DP:GQ:MIN_DP:PL 0/0:35:73:35:0,73,1065 1 3216017 . G . . END=3216741 GT:DP:GQ:MIN_DP:PL 0/0:78:99:36:0,99,1123 1 3216742 . G T, 2066.77 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PL:SB 1/1:65:99:2095,195,0,2095,195,2095:0,0,20,45 1 3216743 . A . . END=3216907 GT:DP:GQ:MIN_DP:PL 0/0:57:99:44:0,120,1800 1 3216908 . G . . END=3216908 GT:DP:GQ:MIN_DP:PL 0/0:47:91:47:0,92,1538 1 3216909 . C . . END=3216947 GT:DP:GQ:MIN_DP:PL 0/0:48:99:44:0,120,1800 1 3216948 . G . . END=3216948 GT:DP:GQ:MIN_DP:PL 0/0:43:94:43:0,94,1370 1 3216949 . G . . END=3216967 GT:DP:GQ:MIN_DP:PL 0/0:40:99:37:0,99,1485 --[ errorlogs/3342_8_14MCB140_CATCAAGT_tR1-mduprabq-dpfix-woi-grep.log ]-- 1 5019242 . T . . END=5019243 GT:DP:GQ:MIN_DP:PL 0/0:38:27:35:0,27,405 1 5019244 . C . . END=5019244 GT:DP:GQ:MIN_DP:PL 0/0:35:24:35:0,24,360 1 5019245 . A . . END=5019248 GT:DP:GQ:MIN_DP:PL 0/0:35:21:33:0,21,315 1 5019249 . C . . END=5019250 GT:DP:GQ:MIN_DP:PL 0/0:32:18:32:0,18,270 1 5019251 . T . . END=5019251 GT:DP:GQ:MIN_DP:PL 0/0:32:6:32:0,6,90 1 5019252 . CGGGG C,CGG, 198.73 . ClippingRankSum=0.747;MLEAC=1,1,0;MLEAF=0.500,0.500,0.00 GT:DP:GQ:PL:SB 1/2:8:66:236,93,365,72,0,66,176,109,78,182:0,1,4,0 1 5019257 . G . . END=5019257 GT:DP:GQ:MIN_DP:PL 0/0:21:0:21:0,0,524 1 5019258 . G . . END=5019259 GT:DP:GQ:MIN_DP:PL 0/0:21:54:21:0,54,810 1 5019260 . G . . END=5019261 GT:DP:GQ:MIN_DP:PL 0/0:24:51:24:0,51,765 1 5019262 . G . . END=5019262 GT:DP:GQ:MIN_DP:PL 0/0:25:54:25:0,54,810 1 5019263 . G . . END=5019263 GT:DP:GQ:MIN_DP:PL 0/0:26:57:26:0,57,855 --[ errorlogs/3342_9_14MCB172_CGCTGATC_tR1-mduprabq-dpfix-wi-grep.log ]-- 1 3421629 . A . . END=3421631 GT:DP:GQ:MIN_DP:PL 0/0:8:21:8:0,21,315 1 3421632 . G . . END=3421638 GT:DP:GQ:MIN_DP:PL 0/0:8:18:7:0,18,270 1 3421639 . T . . END=3421644 GT:DP:GQ:MIN_DP:PL 0/0:9:24:9:0,24,360 1 3421645 . T . . END=3421648 GT:DP:GQ:MIN_DP:PL 0/0:10:30:10:0,30,309 1 3421649 . A . . END=3421649 GT:DP:GQ:MIN_DP:PL 0/0:11:33:11:0,33,349 1 3421650 . T C, 352.77 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PL:SB 1/1:11:33:381,33,0,381,33,381:0,0,7,4 1 3421651 . A . . END=3421652 GT:DP:GQ:MIN_DP:PL 0/0:11:33:11:0,33,339 1 3421653 . A . . END=3421655 GT:DP:GQ:MIN_DP:PL 0/0:12:36:12:0,36,375 1 3421656 . T . . END=3421660 GT:DP:GQ:MIN_DP:PL 0/0:13:39:13:0,39,408 1 3421661 . A . . END=3421663 GT:DP:GQ:MIN_DP:PL 0/0:14:42:14:0,42,432 1 3421664 . C . . END=3421670 GT:DP:GQ:MIN_DP:PL 0/0:15:45:15:0,45,484 --[ errorlogs/3342_9_14MCB172_CGCTGATC_tR1-mduprabq-dpfix-woi-grep.log ]-- 1 10003111 . A . . END=10003122 GT:DP:GQ:MIN_DP:PL 0/0:6:15:5:0,15,146 1 10003123 . A . . END=10003126 GT:DP:GQ:MIN_DP:PL 0/0:6:18:6:0,18,182 1 10003127 . A . . END=10003130 GT:DP:GQ:MIN_DP:PL 0/0:7:21:7:0,21,202 1 10003131 . C . . END=10003132 GT:DP:GQ:MIN_DP:PL 0/0:8:24:8:0,24,263 1 10003133 . A . . END=10003136 GT:DP:GQ:MIN_DP:PL 0/0:10:30:10:0,30,301 1 10003137 . T C, 310.77 . MLEAC=2,0;MLEAF=1.00,0.00 GT:DP:GQ:PL:SB 1/1:10:30:339,30,0,339,30,339:0,0,9,1 1 10003138 . G . . END=10003138 GT:DP:GQ:MIN_DP:PL 0/0:10:30:10:0,30,311 1 10003139 . C . . END=10003142 GT:DP:GQ:MIN_DP:PL 0/0:11:33:11:0,33,333 1 10003143 . A . . END=10003147 GT:DP:GQ:MIN_DP:PL 0/0:12:36:12:0,36,373 1 10003148 . A . . END=10003149 GT:DP:GQ:MIN_DP:PL 0/0:13:39:13:0,39,431 1 10003150 . T . . END=10003150 GT:DP:GQ:MIN_DP:PL 0/0:13:36:13:0,36,540