##fileformat=VCFv4.1 ##ALT= ##FILTER= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##GATKCommandLine.GenotypeGVCFs= ##GATKCommandLine.HaplotypeCaller= ##GVCFBlock0-1=minGQ=0(inclusive),maxGQ=1(exclusive) ##GVCFBlock1-2=minGQ=1(inclusive),maxGQ=2(exclusive) ##GVCFBlock10-11=minGQ=10(inclusive),maxGQ=11(exclusive) ##GVCFBlock11-12=minGQ=11(inclusive),maxGQ=12(exclusive) ##GVCFBlock12-13=minGQ=12(inclusive),maxGQ=13(exclusive) ##GVCFBlock13-14=minGQ=13(inclusive),maxGQ=14(exclusive) ##GVCFBlock14-15=minGQ=14(inclusive),maxGQ=15(exclusive) ##GVCFBlock15-16=minGQ=15(inclusive),maxGQ=16(exclusive) ##GVCFBlock16-17=minGQ=16(inclusive),maxGQ=17(exclusive) ##GVCFBlock17-18=minGQ=17(inclusive),maxGQ=18(exclusive) ##GVCFBlock18-19=minGQ=18(inclusive),maxGQ=19(exclusive) ##GVCFBlock19-20=minGQ=19(inclusive),maxGQ=20(exclusive) ##GVCFBlock2-3=minGQ=2(inclusive),maxGQ=3(exclusive) ##GVCFBlock20-21=minGQ=20(inclusive),maxGQ=21(exclusive) ##GVCFBlock21-22=minGQ=21(inclusive),maxGQ=22(exclusive) ##GVCFBlock22-23=minGQ=22(inclusive),maxGQ=23(exclusive) ##GVCFBlock23-24=minGQ=23(inclusive),maxGQ=24(exclusive) ##GVCFBlock24-25=minGQ=24(inclusive),maxGQ=25(exclusive) ##GVCFBlock25-26=minGQ=25(inclusive),maxGQ=26(exclusive) ##GVCFBlock26-27=minGQ=26(inclusive),maxGQ=27(exclusive) ##GVCFBlock27-28=minGQ=27(inclusive),maxGQ=28(exclusive) ##GVCFBlock28-29=minGQ=28(inclusive),maxGQ=29(exclusive) ##GVCFBlock29-30=minGQ=29(inclusive),maxGQ=30(exclusive) ##GVCFBlock3-4=minGQ=3(inclusive),maxGQ=4(exclusive) ##GVCFBlock30-31=minGQ=30(inclusive),maxGQ=31(exclusive) ##GVCFBlock31-32=minGQ=31(inclusive),maxGQ=32(exclusive) ##GVCFBlock32-33=minGQ=32(inclusive),maxGQ=33(exclusive) ##GVCFBlock33-34=minGQ=33(inclusive),maxGQ=34(exclusive) ##GVCFBlock34-35=minGQ=34(inclusive),maxGQ=35(exclusive) ##GVCFBlock35-36=minGQ=35(inclusive),maxGQ=36(exclusive) ##GVCFBlock36-37=minGQ=36(inclusive),maxGQ=37(exclusive) ##GVCFBlock37-38=minGQ=37(inclusive),maxGQ=38(exclusive) ##GVCFBlock38-39=minGQ=38(inclusive),maxGQ=39(exclusive) ##GVCFBlock39-40=minGQ=39(inclusive),maxGQ=40(exclusive) ##GVCFBlock4-5=minGQ=4(inclusive),maxGQ=5(exclusive) ##GVCFBlock40-41=minGQ=40(inclusive),maxGQ=41(exclusive) ##GVCFBlock41-42=minGQ=41(inclusive),maxGQ=42(exclusive) ##GVCFBlock42-43=minGQ=42(inclusive),maxGQ=43(exclusive) ##GVCFBlock43-44=minGQ=43(inclusive),maxGQ=44(exclusive) ##GVCFBlock44-45=minGQ=44(inclusive),maxGQ=45(exclusive) ##GVCFBlock45-46=minGQ=45(inclusive),maxGQ=46(exclusive) ##GVCFBlock46-47=minGQ=46(inclusive),maxGQ=47(exclusive) ##GVCFBlock47-48=minGQ=47(inclusive),maxGQ=48(exclusive) ##GVCFBlock48-49=minGQ=48(inclusive),maxGQ=49(exclusive) ##GVCFBlock49-50=minGQ=49(inclusive),maxGQ=50(exclusive) ##GVCFBlock5-6=minGQ=5(inclusive),maxGQ=6(exclusive) ##GVCFBlock50-51=minGQ=50(inclusive),maxGQ=51(exclusive) ##GVCFBlock51-52=minGQ=51(inclusive),maxGQ=52(exclusive) ##GVCFBlock52-53=minGQ=52(inclusive),maxGQ=53(exclusive) ##GVCFBlock53-54=minGQ=53(inclusive),maxGQ=54(exclusive) ##GVCFBlock54-55=minGQ=54(inclusive),maxGQ=55(exclusive) ##GVCFBlock55-56=minGQ=55(inclusive),maxGQ=56(exclusive) ##GVCFBlock56-57=minGQ=56(inclusive),maxGQ=57(exclusive) ##GVCFBlock57-58=minGQ=57(inclusive),maxGQ=58(exclusive) ##GVCFBlock58-59=minGQ=58(inclusive),maxGQ=59(exclusive) ##GVCFBlock59-60=minGQ=59(inclusive),maxGQ=60(exclusive) ##GVCFBlock6-7=minGQ=6(inclusive),maxGQ=7(exclusive) ##GVCFBlock60-70=minGQ=60(inclusive),maxGQ=70(exclusive) ##GVCFBlock7-8=minGQ=7(inclusive),maxGQ=8(exclusive) ##GVCFBlock70-80=minGQ=70(inclusive),maxGQ=80(exclusive) ##GVCFBlock8-9=minGQ=8(inclusive),maxGQ=9(exclusive) ##GVCFBlock80-90=minGQ=80(inclusive),maxGQ=90(exclusive) ##GVCFBlock9-10=minGQ=9(inclusive),maxGQ=10(exclusive) ##GVCFBlock90-99=minGQ=90(inclusive),maxGQ=99(exclusive) ##GVCFBlock99-2147483647=minGQ=99(inclusive),maxGQ=2147483647(exclusive) ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##reference=file:///shareDB/genome/human/human_g1k_v37.fasta #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT Sample_RB1003-A Sample_RB1004-C Sample_RB1012-A Sample_RB1020-A Sample_RB10211-A Sample_RB10232-B Sample_RB1026-A Sample_RB10300-C Sample_RB1052-B Sample_RB1053-A Sample_RB1089-G Sample_RB1096-D Sample_RB1148-1-1 Sample_RB11580-Z Sample_RB11641-A Sample_RB11643-B Sample_RB11658-B Sample_RB11692-A Sample_RB11869-B Sample_RB11951-3 Sample_RB1197-Z Sample_RB11980-3 Sample_RB12203-B Sample_RB12215-A Sample_RB12218-A Sample_RB12270-A Sample_RB12352-A Sample_RB1237-A Sample_RB1238-A Sample_RB1245-Z Sample_RB12479-A Sample_RB1248-B Sample_RB12522-A Sample_RB12545-A Sample_RB12551-D Sample_RB12565-A Sample_RB12591-A Sample_RB12601-A Sample_RB12692-A Sample_RB12694-A Sample_RB12723-A Sample_RB12798-A Sample_RB1280-A Sample_RB1284-A Sample_RB1285-A Sample_RB12853-A Sample_RB1286-A Sample_RB12882-A Sample_RB1289-B Sample_RB1292-A Sample_RB12930-B Sample_RB12937-B Sample_RB1294-B Sample_RB1295-A Sample_RB13023-D-1 Sample_RB1312-1-1 Sample_RB13157-1 Sample_RB1321-B Sample_RB13258-2 Sample_RB1329-A Sample_RB13293-1 Sample_RB13300-1 Sample_RB13301-1 Sample_RB13305-1 Sample_RB1337-B Sample_RB1351-A Sample_RB1354-A Sample_RB1355-A Sample_RB1357-A Sample_RB1360-A Sample_RB1379-B Sample_RB1383-B Sample_RB1404-A Sample_RB14107-3 Sample_RB14115-2 Sample_RB14121-4 Sample_RB14165-1 Sample_RB14191-1 Sample_RB14196-3 Sample_RB14205-1 Sample_RB1427-A Sample_RB14279-5 Sample_RB14282-1 Sample_RB14293-1 Sample_RB14300-1 Sample_RB14380-1 Sample_RB14390-1 Sample_RB14411-2 Sample_RB14413-1 Sample_RB14437-1 Sample_RB14442-1 Sample_RB14447-3 Sample_RB14473-1 Sample_RB1459-B Sample_RB1463-A Sample_RB1491-A Sample_RB1544-B Sample_RB1545-G Sample_RB1552-A Sample_RB1557-E 1 565935 rs55973403 C T 230.97 . AC=1;AF=5.263e-03;AN=190;BaseQRankSum=3.01;ClippingRankSum=1.08;DB;DP=739;FS=2.741;InbreedingCoeff=-0.0472;MLEAC=1;MLEAF=5.263e-03;MQ=40.80;MQRankSum=0.252;QD=7.96;ReadPosRankSum=1.68;SOR=2.041 GT:AD:DP:GQ:PL 0/0:5,0:5:9:0,9,135 0/0:10,0:10:24:0,24,360 0/0:15,0:15:42:0,42,630 0/0:8,0:8:24:0,24,291 0/0:8,0:8:15:0,15,225 0/0:10,0:10:18:0,18,270 0/0:5,0:5:15:0,15,185 0/0:9,0:9:15:0,15,225 0/0:7,0:7:21:0,21,252 0/0:10,0:10:27:0,27,405 0/0:5,0:5:4:0,4,134 0/0:2,0:2:6:0,6,70 ./.:0,0:0 0/0:5,0:5:15:0,15,191 0/0:14,0:14:42:0,42,507 0/0:20,0:20:54:0,54,810 0/0:10,0:10:24:0,24,360 0/0:8,0:8:21:0,21,315 0/0:13,0:13:39:0,39,484 0/0:2,0:2:6:0,6,70 0/0:13,0:13:24:0,24,360 0/0:7,0:7:12:0,12,180 0/0:7,0:7:21:0,21,257 0/0:14,0:14:36:0,36,540 0/0:3,0:3:9:0,9,108 0/0:4,0:4:12:0,12,124 0/0:1,0:1:3:0,3,34 0/0:8,0:8:18:0,18,270 0/0:6,0:6:18:0,18,209 0/0:7,0:7:21:0,21,240 ./.:0,0:0 0/0:3,0:3:9:0,9,109 0/0:11,0:11:33:0,33,402 0/0:7,0:7:21:0,21,242 0/0:13,0:13:33:0,33,495 0/0:11,0:11:27:0,27,405 0/0:4,0:4:12:0,12,151 0/0:4,0:4:9:0,9,135 0/0:3,0:3:9:0,9,114 0/0:2,0:2:6:0,6,77 0/0:1,0:1:3:0,3,29 0/0:3,0:3:9:0,9,114 0/0:5,0:5:9:0,9,135 0/0:10,0:10:30:0,30,379 0/0:3,0:3:9:0,9,114 0/0:6,0:6:15:0,15,225 0/0:8,0:8:21:0,21,315 0/0:15,0:15:42:0,42,630 0/0:10,0:10:21:0,21,315 0/0:2,0:2:6:0,6,70 0/0:1,0:1:3:0,3,38 0/0:6,0:6:15:0,15,225 0/0:1,0:1:3:0,3,34 0/0:5,0:5:12:0,12,180 ./.:0,0:0 ./.:0,0:0 0/0:17,0:17:51:0,51,602 0/0:26,0:26:60:0,60,900 0/0:5,0:5:15:0,15,182 0/0:5,0:5:15:0,15,191 0/0:9,0:9:27:0,27,334 0/0:5,0:5:15:0,15,180 0/0:10,0:10:30:0,30,377 0/0:3,0:3:9:0,9,102 0/0:4,0:4:12:0,12,151 0/0:6,0:6:18:0,18,221 0/0:3,0:3:9:0,9,91 0/0:6,0:6:18:0,18,222 0/0:4,0:4:12:0,12,136 0/0:4,0:4:12:0,12,138 0/0:11,0:11:30:0,30,450 0/0:11,0:11:0:0,0,262 0/0:10,0:10:30:0,30,365 0/0:15,0:15:42:0,42,630 0/0:14,0:14:39:0,39,585 0/1:19,10:29:99:272,0,514 0/0:10,0:10:0:0,0,295 0/0:23,0:23:60:0,60,900 0/0:6,0:6:15:0,15,225 0/0:4,0:4:12:0,12,136 0/0:2,0:2:6:0,6,72 0/0:6,0:6:15:0,15,225 0/0:13,0:13:36:0,36,540 0/0:3,0:3:6:0,6,90 0/0:4,0:4:12:0,12,146 0/0:18,0:18:51:0,51,765 0/0:11,0:11:33:0,33,402 0/0:15,0:15:33:0,33,495 0/0:7,0:7:0:0,0,106 0/0:4,0:4:9:0,9,135 0/0:3,0:3:9:0,9,103 0/0:21,0:21:51:0,51,765 0/0:2,0:2:6:0,6,62 ./.:0,0:0 0/0:5,0:5:15:0,15,182 0/0:3,0:3:9:0,9,77 0/0:2,0:2:6:0,6,67 0/0:3,0:3:9:0,9,108 0/0:3,0:3:6:0,6,90 0/0:4,0:4:12:0,12,111 1 565987 . C T 334.52 . AC=2;AF=0.010;AN=194;BaseQRankSum=-7.340e-01;ClippingRankSum=-5.100e-01;DP=2140;FS=2.866;InbreedingCoeff=-0.0233;MLEAC=2;MLEAF=0.010;MQ=43.77;MQRankSum=0.396;QD=7.96;ReadPosRankSum=-3.960e-01;SOR=1.641 GT:AD:DP:GQ:PL 0/0:8,0:8:15:0,15,225 0/0:26,0:26:54:0,54,810 0/0:37,0:37:99:0,99,1485 0/0:13,0:13:33:0,33,495 0/0:29,0:29:57:0,57,855 0/0:34,0:34:84:0,84,1260 0/0:8,0:8:18:0,18,270 0/0:21,0:21:24:0,24,727 0/0:66,0:66:99:0,120,1800 0/0:15,0:15:42:0,42,630 0/0:25,0:25:45:0,45,675 0/0:6,0:6:9:0,9,135 0/0:1,0:1:3:0,3,38 0/0:16,0:16:39:0,39,585 0/0:16,0:16:30:0,30,450 0/0:22,0:22:60:0,60,900 0/0:14,0:14:36:0,36,540 0/1:13,12:25:99:291,0,320 0/0:26,0:26:66:0,66,990 0/0:16,0:16:0:0,0,271 0/0:24,0:24:60:0,60,900 0/0:21,0:21:45:0,45,675 0/0:19,0:19:42:0,42,630 0/0:31,0:31:81:0,81,1215 0/0:26,0:26:63:0,63,913 0/0:14,0:14:39:0,39,585 0/0:14,0:14:36:0,36,540 0/0:14,0:14:24:0,24,360 0/0:15,0:15:36:0,36,540 0/0:14,0:14:36:0,36,540 0/0:1,0:1:3:0,3,28 0/0:84,0:84:99:0,120,1800 0/0:30,0:30:60:0,60,900 0/0:107,0:107:99:0,120,1800 0/0:29,0:29:72:0,72,1080 0/0:34,0:34:99:0,99,1209 0/0:11,0:11:21:0,21,315 0/0:22,0:22:51:0,51,765 0/1:13,4:17:99:102,0,409 0/0:9,0:9:27:0,27,326 ./.:0,0:0 0/0:13,0:13:39:0,39,500 0/0:22,0:22:48:0,48,720 0/0:16,0:16:42:0,42,630 0/0:12,0:12:27:0,27,405 0/0:14,0:14:36:0,36,540 0/0:13,0:13:21:0,21,315 0/0:41,0:41:93:0,93,1395 0/0:18,0:18:36:0,36,540 0/0:9,0:9:15:0,15,225 0/0:8,0:8:12:0,12,180 0/0:8,0:8:24:0,24,273 0/0:5,0:5:12:0,12,180 0/0:16,0:16:36:0,36,540 0/0:1,0:1:3:0,3,32 ./.:0,0:0 0/0:43,0:43:99:0,112,1627 0/0:46,0:46:99:0,102,1530 0/0:11,0:11:30:0,30,450 0/0:33,0:33:69:0,69,1035 0/0:15,0:15:42:0,42,630 0/0:24,0:24:54:0,54,810 0/0:16,0:16:27:0,27,405 0/0:5,0:5:9:0,9,135 0/0:8,0:8:12:0,12,180 0/0:26,0:26:66:0,66,990 0/0:18,0:18:39:0,39,585 0/0:18,0:18:48:0,48,720 0/0:17,0:17:36:0,36,540 0/0:12,0:12:30:0,30,450 0/0:26,0:26:51:0,51,765 0/0:17,0:17:30:0,30,450 0/0:22,0:22:57:0,57,855 0/0:70,0:70:99:0,120,1800 0/0:85,0:85:99:0,99,1485 0/0:42,0:42:99:0,105,1575 0/0:35,0:35:78:0,78,1170 0/0:38,0:38:99:0,99,1485 0/0:22,0:22:45:0,45,675 0/0:10,0:10:15:0,15,225 0/0:23,0:23:54:0,54,810 0/0:3,0:3:6:0,6,90 0/0:30,0:30:81:0,81,1215 0/0:11,0:11:24:0,24,360 0/0:10,0:10:27:0,27,405 0/0:40,0:40:99:0,102,1530 0/0:26,0:26:57:0,57,855 0/0:20,0:20:33:0,33,495 0/0:15,0:15:30:0,30,450 0/0:10,0:10:27:0,27,405 0/0:3,0:3:9:0,9,103 0/0:44,0:44:90:0,90,1350 0/0:7,0:7:15:0,15,225 ./.:0,0:0 0/0:27,0:27:57:0,57,855 0/0:16,0:16:36:0,36,540 0/0:3,0:3:9:0,9,109 0/0:10,0:10:15:0,15,225 0/0:17,0:17:42:0,42,630 0/0:9,0:9:24:0,24,360 1 566048 rs6421780 G A 2892.57 . AC=24;AF=0.121;AN=198;BaseQRankSum=-1.769e+00;ClippingRankSum=0.00;DB;DP=2836;FS=2.154;InbreedingCoeff=-0.0440;MLEAC=24;MLEAF=0.121;MQ=34.32;MQRankSum=-1.515e+00;QD=3.20;ReadPosRankSum=-4.200e-02;SOR=0.186 GT:AD:DP:GQ:PL 0/0:20,0:20:54:0,54,810 0/0:35,0:35:99:0,99,1485 0/0:37,0:37:99:0,99,1485 0/0:32,0:32:81:0,81,1215 0/0:42,0:42:99:0,105,1575 0/0:38,0:38:99:0,99,1412 0/1:14,7:21:99:163,0,335 0/0:32,0:32:76:0,76,1133 0/0:19,0:19:57:0,57,712 0/0:40,0:40:99:0,109,1471 0/0:26,0:26:60:0,60,900 0/0:1,0:1:3:0,3,39 0/0:2,0:2:6:0,6,52 0/0:41,0:41:99:0,99,1485 0/0:41,0:41:0:0,0,1223 0/1:26,7:33:99:120,0,714 0/0:24,0:24:60:0,60,900 0/0:27,0:27:60:0,60,900 0/1:43,8:51:91:91,0,1123 0/0:28,0:28:13:0,13,641 0/1:41,13:54:99:220,0,1169 0/0:28,0:28:72:0,72,1080 0/0:24,0:24:60:0,60,900 0/0:40,0:40:99:0,105,1575 0/1:29,4:33:18:18,0,837 0/0:24,0:24:54:0,54,810 0/0:9,0:9:27:0,27,337 0/0:26,0:26:0:0,0,623 0/0:26,0:26:60:0,60,900 0/0:20,0:20:60:0,60,756 ./.:0,0:0 0/0:22,0:22:51:0,51,765 0/1:21,6:27:99:102,0,571 0/0:8,0:8:11:0,11,211 0/0:43,0:43:99:0,99,1485 0/0:34,0:34:99:0,99,1209 0/0:17,0:17:48:0,48,720 0/1:22,5:27:68:68,0,655 0/1:31,12:43:99:250,0,846 0/1:16,5:21:90:90,0,466 0/0:1,0:1:3:0,3,20 0/0:20,0:20:54:0,54,810 0/0:20,0:20:60:0,60,727 0/0:24,0:24:60:0,60,900 0/1:11,8:19:99:185,0,325 0/1:32,12:44:99:225,0,928 0/0:25,0:25:54:0,54,810 0/0:42,0:42:99:0,99,1485 0/0:35,0:35:90:0,90,1350 0/0:18,0:18:53:0,53,604 0/0:13,0:13:33:0,33,495 0/0:15,0:15:42:0,42,630 0/0:14,0:14:36:0,36,540 0/1:38,13:51:99:243,0,1134 0/0:8,0:8:24:0,24,218 0/0:5,0:5:15:0,15,175 0/1:64,11:75:77:77,0,1717 0/0:46,0:46:99:0,102,1530 0/0:26,0:26:72:0,72,1080 0/0:26,0:26:51:0,51,765 0/1:12,9:21:99:219,0,306 0/0:26,0:26:60:0,60,900 0/0:25,0:25:60:0,60,900 0/0:12,0:12:30:0,30,450 0/0:25,0:25:60:0,60,900 0/1:33,5:38:25:25,0,995 0/0:31,0:31:81:0,81,1215 0/1:23,9:32:99:174,0,608 0/0:23,0:23:60:0,60,900 0/0:21,0:21:42:0,42,630 0/0:28,0:28:72:0,72,1080 0/1:39,8:47:99:99,0,1182 0/0:38,0:38:99:0,102,1530 0/1:68,11:79:83:83,0,1873 0/0:47,0:47:99:0,120,1800 0/1:84,13:97:96:96,0,2415 0/1:30,6:36:39:39,0,858 0/0:38,0:38:99:0,99,1485 0/0:26,0:26:39:0,39,934 0/0:19,0:19:51:0,51,765 0/0:22,0:22:60:0,60,900 0/0:6,0:6:17:0,17,100 0/0:40,0:40:99:0,99,1485 0/0:15,0:15:42:0,42,630 0/0:5,0:5:9:0,9,135 0/0:40,0:40:99:0,102,1530 0/0:40,0:40:99:0,102,1530 0/0:37,0:37:99:0,99,1485 0/0:17,0:17:39:0,39,585 0/0:18,0:18:16:0,16,589 0/1:1,7:8:4:193,0,4 0/0:42,0:42:99:0,99,1373 0/0:10,0:10:27:0,27,405 0/0:3,0:3:9:0,9,110 0/0:40,0:40:99:0,99,1485 0/0:39,0:39:99:0,99,1485 1/1:0,6:6:18:199,18,0 0/0:19,0:19:57:0,57,649 0/1:31,10:41:99:171,0,935 0/0:30,0:30:81:0,81,1215 1 566130 rs1832730 C T 1470.12 . AC=3;AF=0.015;AN=198;BaseQRankSum=-2.561e+00;ClippingRankSum=0.418;DB;DP=3781;FS=187.155;InbreedingCoeff=-0.0214;MLEAC=3;MLEAF=0.015;MQ=30.07;MQRankSum=3.58;QD=3.57;ReadPosRankSum=-1.900e-01;SOR=9.087 GT:AD:DP:GQ:PL 0/0:36,0:36:99:0,102,1530 0/0:36,0:36:99:0,99,1485 0/0:56,0:56:99:0,105,1575 0/0:34,0:34:99:0,99,1353 0/0:39,0:39:99:0,99,1485 0/0:48,0:48:99:0,99,1485 0/0:34,0:34:99:0,102,1309 0/0:34,0:34:99:0,102,1298 0/0:34,0:34:29:0,29,1136 0/0:51,0:51:99:0,102,1530 0/0:41,0:41:99:0,102,1530 0/0:28,0:28:84:0,84,1032 0/0:5,0:5:9:0,9,135 0/0:41,0:41:99:0,102,1469 0/0:40,0:40:99:0,105,1525 0/0:41,0:41:99:0,111,1665 0/0:34,0:34:99:0,99,1395 0/0:48,0:48:32:0,32,1512 0/0:44,0:44:99:0,99,1485 0/0:53,0:53:82:0,82,1177 0/0:40,0:40:99:0,99,1485 0/0:33,0:33:99:0,99,1228 0/0:33,0:33:90:0,90,1350 0/0:45,0:45:99:0,102,1530 0/0:37,0:37:99:0,102,1530 0/0:38,0:38:99:0,104,1322 0/0:22,0:22:51:0,51,765 0/0:34,0:34:99:0,99,1286 0/0:36,0:36:99:0,99,1485 0/0:27,0:27:81:0,81,971 ./.:0,0:0 0/0:42,0:42:99:0,102,1530 0/0:36,0:36:99:0,99,1485 0/1:40,14:54:99:278,0,785 0/0:39,0:39:99:0,99,1485 0/0:45,0:45:99:0,100,1530 0/0:20,0:20:60:0,60,757 0/0:36,0:36:99:0,99,1485 0/0:37,0:37:99:0,99,1485 0/0:39,0:39:99:0,105,1665 0/0:4,0:4:0:0,0,23 0/0:35,0:35:81:0,81,1215 0/0:33,0:33:99:0,99,1233 0/0:36,0:36:99:0,102,1394 0/0:33,0:33:99:0,99,1274 0/0:35,0:35:99:0,102,1359 0/0:36,0:36:99:0,102,1324 0/0:59,0:59:99:0,102,1530 0/0:35,0:35:99:0,99,1385 0/0:37,0:37:99:0,102,1137 0/0:26,0:26:72:0,72,943 0/0:33,0:33:63:0,63,1084 0/0:25,0:25:51:0,51,765 0/0:34,0:34:99:0,99,1372 0/0:24,0:24:32:0,32,357 0/0:5,0:5:15:0,15,145 0/0:51,0:51:99:0,99,1485 0/0:46,0:46:99:0,102,1530 0/0:35,0:35:99:0,99,1411 0/0:35,0:35:99:0,99,1485 0/0:39,0:39:99:0,99,1407 0/0:40,0:40:99:0,105,1539 0/0:36,0:36:99:0,102,1395 0/0:20,0:20:60:0,60,779 0/0:34,0:34:81:0,81,1215 0/0:36,0:36:99:0,102,1530 0/0:39,0:39:99:0,99,1451 0/0:36,0:36:99:0,99,1309 0/0:34,0:34:99:0,99,1172 0/0:40,0:40:99:0,99,1485 0/0:34,0:34:99:0,99,1352 0/0:37,0:37:99:0,99,1485 0/0:46,0:46:99:0,108,1620 0/1:151,52:203:99:931,0,3708 0/1:128,27:155:99:335,0,3536 0/0:45,0:45:99:0,102,1530 0/0:37,0:37:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:39,0:39:99:0,107,1477 0/0:22,0:22:60:0,60,777 0/0:39,0:39:90:0,90,1350 0/0:11,0:11:0:0,0,175 0/0:40,0:40:99:0,102,1530 0/0:42,0:42:99:0,99,1485 0/0:25,0:25:72:0,72,938 0/0:40,0:40:99:0,102,1530 0/0:36,0:36:99:0,102,1311 0/0:35,0:35:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:30,0:30:81:0,81,1215 0/0:27,0:27:72:0,72,1080 0/0:42,0:42:99:0,99,1373 0/0:22,0:22:57:0,57,855 0/0:2,0:2:6:0,6,70 0/0:38,0:38:99:0,102,1396 0/0:35,0:35:99:0,99,1485 0/0:34,0:34:81:0,81,1215 0/0:17,0:17:18:0,18,562 0/0:39,0:39:99:0,102,1530 0/0:43,0:43:99:0,114,1353 1 566139 . A C 1403.92 . AC=2;AF=0.010;AN=200;BaseQRankSum=1.81;ClippingRankSum=1.12;DP=3574;FS=12.540;InbreedingCoeff=-0.0140;MLEAC=2;MLEAF=0.010;MQ=35.81;MQRankSum=2.70;QD=8.67;ReadPosRankSum=2.90;SOR=1.246 GT:AD:DP:GQ:PL 0/0:33,0:33:84:0,84,1260 0/1:47,39:86:99:891,0,1234 0/0:56,0:56:99:0,105,1575 0/0:34,0:34:99:0,99,1353 0/0:39,0:39:99:0,99,1485 0/0:48,0:48:99:0,99,1485 0/0:40,0:40:90:0,90,1350 0/0:34,0:34:99:0,102,1298 0/0:36,0:36:99:0,99,1485 0/0:51,0:51:99:0,102,1530 0/0:41,0:41:99:0,102,1530 0/0:28,0:28:63:0,63,945 0/0:2,0:2:3:0,3,45 0/0:41,0:41:99:0,102,1469 0/0:40,0:40:99:0,105,1525 0/0:41,0:41:99:0,111,1665 0/0:34,0:34:99:0,99,1395 0/0:39,0:39:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:52,0:52:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:33,0:33:99:0,99,1228 0/0:30,0:30:71:0,71,1095 0/0:45,0:45:99:0,102,1530 0/0:37,0:37:99:0,102,1530 0/0:38,0:38:99:0,104,1322 0/0:18,0:18:39:0,39,585 0/0:34,0:34:99:0,99,1286 0/0:36,0:36:99:0,99,1485 0/0:30,0:30:72:0,72,1080 0/0:1,0:1:3:0,3,29 0/1:51,25:76:99:572,0,1225 0/0:36,0:36:99:0,99,1485 0/0:48,0:48:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:45,0:45:99:0,100,1530 0/0:23,0:23:60:0,60,900 0/0:36,0:36:99:0,99,1485 0/0:37,0:37:99:0,99,1485 0/0:39,0:39:99:0,105,1665 0/0:12,0:12:24:0,24,360 0/0:25,0:25:60:0,60,900 0/0:33,0:33:99:0,99,1233 0/0:43,0:43:99:0,102,1530 0/0:41,0:41:90:0,90,1350 0/0:35,0:35:99:0,102,1359 0/0:36,0:36:99:0,102,1324 0/0:59,0:59:99:0,102,1530 0/0:35,0:35:99:0,99,1385 0/0:37,0:37:99:0,102,1137 0/0:28,0:28:81:0,81,1215 0/0:30,0:30:69:0,69,1035 0/0:18,0:18:45:0,45,675 0/0:34,0:34:99:0,99,1372 0/0:27,0:27:48:0,48,720 0/0:7,0:7:21:0,21,213 0/0:51,0:51:99:0,99,1485 0/0:46,0:46:99:0,102,1530 0/0:35,0:35:99:0,99,1411 0/0:35,0:35:99:0,99,1485 0/0:39,0:39:99:0,99,1407 0/0:40,0:40:99:0,105,1539 0/0:36,0:36:99:0,102,1395 0/0:23,0:23:51:0,51,765 0/0:32,0:32:66:0,66,990 0/0:36,0:36:99:0,102,1530 0/0:42,0:42:99:0,99,1485 0/0:36,0:36:99:0,99,1309 0/0:34,0:34:99:0,99,1172 0/0:36,0:36:87:0,87,1305 0/0:34,0:34:99:0,99,1352 0/0:37,0:37:99:0,99,1485 0/0:46,0:46:99:0,108,1620 0/0:56,0:56:99:0,102,1530 0/0:47,0:47:99:0,99,1485 0/0:45,0:45:99:0,102,1530 0/0:37,0:37:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:39,0:39:99:0,107,1477 0/0:22,0:22:60:0,60,777 0/0:34,0:34:75:0,75,1125 0/0:12,0:12:33:0,33,495 0/0:40,0:40:99:0,102,1530 0/0:32,0:32:72:0,72,1080 0/0:23,0:23:48:0,48,720 0/0:40,0:40:99:0,102,1530 0/0:36,0:36:99:0,102,1311 0/0:35,0:35:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:30,0:30:81:0,81,1215 0/0:26,0:26:54:0,54,810 0/0:42,0:42:99:0,99,1373 0/0:21,0:21:54:0,54,810 0/0:2,0:2:6:0,6,70 0/0:38,0:38:99:0,102,1396 0/0:35,0:35:99:0,99,1485 0/0:26,0:26:60:0,60,900 0/0:18,0:18:45:0,45,675 0/0:39,0:39:99:0,102,1530 0/0:43,0:43:99:0,114,1353 1 1102563 rs72563729 G A 1265.81 . AC=6;AF=0.030;AN=200;BaseQRankSum=0.731;ClippingRankSum=0.550;DB;DP=1800;FS=0.907;InbreedingCoeff=-0.0308;MLEAC=6;MLEAF=0.030;MQ=60.00;MQRankSum=0.720;QD=16.02;ReadPosRankSum=0.731;SOR=0.874 GT:AD:DP:GQ:PL 0/0:21,0:21:54:0,54,810 0/0:23,0:23:60:0,60,900 0/0:21,0:21:42:0,42,630 0/0:28,0:28:60:0,60,900 0/0:20,0:20:39:0,39,585 0/0:28,0:28:72:0,72,1080 0/0:11,0:11:24:0,24,360 0/0:11,0:11:30:0,30,450 0/0:15,0:15:45:0,45,518 0/0:20,0:20:24:0,24,619 0/0:5,0:5:15:0,15,181 0/0:8,0:8:24:0,24,296 0/0:11,0:11:27:0,27,405 0/0:10,0:10:27:0,27,405 0/0:15,0:15:42:0,42,630 0/0:15,0:15:36:0,36,540 0/0:20,0:20:45:0,45,675 0/0:14,0:14:33:0,33,495 0/0:25,0:25:57:0,57,855 0/0:44,0:44:99:0,99,1437 0/0:20,0:20:39:0,39,585 0/0:23,0:23:60:0,60,900 0/0:13,0:13:27:0,27,405 0/0:27,0:27:60:0,60,957 0/0:13,0:13:33:0,33,495 0/0:34,0:34:81:0,81,1215 0/0:14,0:14:33:0,33,495 0/0:13,0:13:27:0,27,405 0/0:14,0:14:33:0,33,495 0/0:10,0:10:27:0,27,405 0/0:6,0:6:18:0,18,204 0/0:13,0:13:36:0,36,540 0/0:14,0:14:33:0,33,495 0/0:14,0:14:30:0,30,450 0/0:16,0:16:11:0,11,515 0/0:22,0:22:60:0,60,814 0/0:16,0:16:39:0,39,585 0/0:19,0:19:48:0,48,720 0/0:10,0:10:27:0,27,405 0/0:12,0:12:30:0,30,450 0/0:8,0:8:24:0,24,276 0/0:7,0:7:12:0,12,180 0/0:12,0:12:30:0,30,450 0/0:19,0:19:42:0,42,630 0/0:18,0:18:42:0,42,630 0/0:21,0:21:42:0,42,630 0/0:32,0:32:81:0,81,1215 0/1:15,13:28:99:364,0,412 0/0:12,0:12:33:0,33,495 0/0:10,0:10:27:0,27,405 0/0:13,0:13:36:0,36,540 0/0:9,0:9:15:0,15,225 0/0:18,0:18:45:0,45,675 0/0:22,0:22:60:0,60,900 0/0:35,0:35:57:0,57,855 0/0:7,0:7:12:0,12,180 0/0:45,0:45:99:0,102,1530 0/0:26,0:26:51:0,51,765 0/0:13,0:13:27:0,27,405 0/0:16,0:16:42:0,42,630 0/0:26,0:26:72:0,72,1080 0/0:18,0:18:45:0,45,675 0/0:14,0:14:24:0,24,360 0/0:12,0:12:24:0,24,360 0/0:11,0:11:21:0,21,315 0/0:19,0:19:39:0,39,585 0/0:8,0:8:18:0,18,270 0/1:3,4:7:76:124,0,76 0/0:14,0:14:27:0,27,405 0/0:9,0:9:27:0,27,299 0/0:23,0:23:54:0,54,810 0/1:2,4:6:51:138,0,51 0/0:22,0:22:54:0,54,810 0/0:36,0:36:60:0,60,900 0/0:25,0:25:63:0,63,945 0/0:26,0:26:63:0,63,945 0/0:6,0:6:15:0,15,225 0/0:40,0:40:99:0,99,1485 0/0:25,0:25:63:0,63,881 0/0:12,0:12:27:0,27,405 0/0:27,0:27:75:0,75,1125 0/0:15,0:15:39:0,39,585 0/0:20,0:20:42:0,42,630 0/0:12,0:12:27:0,27,405 0/1:1,4:5:20:129,0,20 0/0:43,0:43:99:0,99,1485 0/0:33,0:33:84:0,84,1260 0/1:9,13:22:99:363,0,261 0/0:6,0:6:12:0,12,180 0/0:15,0:15:30:0,30,450 0/0:21,0:21:60:0,60,900 0/0:26,0:26:60:0,60,900 0/0:14,0:14:36:0,36,540 0/0:4,0:4:9:0,9,135 0/0:22,0:22:54:0,54,810 0/0:28,0:28:72:0,72,1080 0/0:15,0:15:39:0,39,585 0/0:13,0:13:30:0,30,450 0/1:3,8:11:47:261,0,47 0/0:29,0:29:72:0,72,1080 1 1103143 . C A 286.83 . AC=1;AF=5.155e-03;AN=194;BaseQRankSum=0.898;ClippingRankSum=-4.800e-01;DP=555;FS=0.000;InbreedingCoeff=-0.0492;MLEAC=1;MLEAF=5.155e-03;MQ=57.66;MQRankSum=0.00;QD=28.68;ReadPosRankSum=-4.800e-01;SOR=2.303 GT:AD:DP:GQ:PGT:PID:PL 0/0:7,0:7:18:.:.:0,18,270 0/0:6,0:6:12:.:.:0,12,180 0/0:7,0:7:21:.:.:0,21,258 0/0:7,0:7:15:.:.:0,15,225 0/0:3,0:3:9:.:.:0,9,114 0/0:9,0:9:24:.:.:0,24,360 0/0:3,0:3:9:.:.:0,9,114 0/0:4,0:4:12:.:.:0,12,149 0/0:2,0:2:6:.:.:0,6,69 0/0:2,0:2:6:.:.:0,6,60 0/0:5,0:5:12:.:.:0,12,180 0/0:7,0:7:21:.:.:0,21,246 0/0:9,0:9:24:.:.:0,24,360 0/0:5,0:5:12:.:.:0,12,180 0/0:5,0:5:15:.:.:0,15,195 0/0:12,0:12:30:.:.:0,30,450 0/0:11,0:11:30:.:.:0,30,450 0/0:3,0:3:9:.:.:0,9,107 0/0:8,0:8:18:.:.:0,18,270 0/0:9,0:9:24:.:.:0,24,360 0/0:6,0:6:15:.:.:0,15,225 0/0:12,0:12:27:.:.:0,27,405 0/0:5,0:5:15:.:.:0,15,182 0/0:12,0:12:24:.:.:0,24,360 0/0:7,0:7:21:.:.:0,21,243 0/0:8,0:8:21:.:.:0,21,315 0/0:1,0:1:3:.:.:0,3,38 0/0:2,0:2:6:.:.:0,6,73 0/0:1,0:1:3:.:.:0,3,35 0/0:2,0:2:6:.:.:0,6,54 ./.:1,0:1 0/0:2,0:2:6:.:.:0,6,75 0/0:8,0:8:21:.:.:0,21,315 0/0:4,0:4:12:.:.:0,12,137 0/0:2,0:2:3:.:.:0,3,45 0/0:12,0:12:30:.:.:0,30,450 0/0:4,0:4:9:.:.:0,9,135 0/0:9,0:9:21:.:.:0,21,315 0/0:6,0:6:18:.:.:0,18,195 0/0:4,0:4:12:.:.:0,12,151 0/0:2,0:2:6:.:.:0,6,67 ./.:0,0:0 0/0:3,0:3:6:.:.:0,6,90 0/0:4,0:4:6:.:.:0,6,90 0/0:4,0:4:9:.:.:0,9,135 0/0:9,0:9:12:.:.:0,12,180 0/0:2,0:2:6:.:.:0,6,64 0/0:7,0:7:15:.:.:0,15,225 0/0:5,0:5:15:.:.:0,15,179 0/0:8,0:8:21:.:.:0,21,315 0/0:8,0:8:21:.:.:0,21,315 0/0:3,0:3:9:.:.:0,9,112 0/0:3,0:3:3:.:.:0,3,45 0/0:5,0:5:15:.:.:0,15,183 0/0:5,0:5:15:.:.:0,15,180 0/0:8,0:8:24:.:.:0,24,286 0/0:10,0:10:19:.:.:0,19,320 0/0:7,0:7:21:.:.:0,21,238 0/0:3,0:3:6:.:.:0,6,90 0/0:3,0:3:9:.:.:0,9,117 0/0:4,0:4:12:.:.:0,12,154 0/0:4,0:4:12:.:.:0,12,139 0/0:11,0:11:21:.:.:0,21,315 ./.:0,0:0 0/0:8,0:8:15:.:.:0,15,225 0/0:4,0:4:12:.:.:0,12,147 0/0:2,0:2:6:.:.:0,6,75 0/0:3,0:3:9:.:.:0,9,103 0/0:5,0:5:12:.:.:0,12,180 0/0:3,0:3:9:.:.:0,9,109 0/0:4,0:4:9:.:.:0,9,135 0/0:2,0:2:6:.:.:0,6,68 0/0:6,0:6:18:.:.:0,18,224 0/0:4,0:4:12:.:.:0,12,155 0/0:9,0:9:27:.:.:0,27,321 0/0:9,0:9:27:.:.:0,27,339 0/0:3,0:3:9:.:.:0,9,97 0/0:15,0:15:33:.:.:0,33,495 0/0:6,0:6:15:.:.:0,15,225 0/0:5,0:5:15:.:.:0,15,185 0/0:4,0:4:9:.:.:0,9,135 0/0:5,0:5:12:.:.:0,12,180 0/0:2,0:2:6:.:.:0,6,72 0/0:3,0:3:0:.:.:0,0,36 0/0:2,0:2:6:.:.:0,6,70 0/0:22,0:22:57:.:.:0,57,855 0/0:5,0:5:15:.:.:0,15,177 0/0:7,0:7:15:.:.:0,15,225 0/0:3,0:3:9:.:.:0,9,101 0/0:2,0:2:6:.:.:0,6,66 0/0:8,0:8:24:.:.:0,24,294 0/0:10,0:10:30:.:.:0,30,358 0/0:5,0:5:15:.:.:0,15,167 0/0:3,0:3:9:.:.:0,9,101 0/1:2,8:10:99:0|1:1103143_C_A:328,0,118 0/0:7,0:7:18:.:.:0,18,270 0/0:2,0:2:6:.:.:0,6,70 0/0:7,0:7:18:.:.:0,18,270 0/0:5,0:5:12:.:.:0,12,180 0/0:5,0:5:15:.:.:0,15,157 1 1103150 rs61768480 G A 3172.51 . AC=21;AF=0.125;AN=168;BaseQRankSum=0.937;ClippingRankSum=-3.580e-01;DB;DP=635;FS=6.655;InbreedingCoeff=0.2164;MLEAC=24;MLEAF=0.143;MQ=57.66;MQRankSum=0.358;QD=25.38;ReadPosRankSum=0.742;SOR=4.003 GT:AD:DP:GQ:PGT:PID:PL 0/0:7,0:7:18:.:.:0,18,270 0/0:6,0:6:18:.:.:0,18,209 0/0:9,0:9:0:.:.:0,0,26 0/1:5,4:9:99:.:.:123,0,133 ./.:4,0:4 ./.:8,0:8 0/0:3,0:3:0:.:.:0,0,22 1/1:0,5:5:15:.:.:187,15,0 0/0:4,0:4:12:.:.:0,12,145 0/0:3,0:3:9:.:.:0,9,95 0/0:5,0:5:12:.:.:0,12,180 0/0:7,0:7:21:.:.:0,21,246 0/0:9,0:9:24:.:.:0,24,360 0/0:5,0:5:15:.:.:0,15,171 0/0:6,0:6:0:.:.:0,0,72 0/0:12,0:12:30:.:.:0,30,450 0/0:12,0:12:36:.:.:0,36,430 0/0:3,0:3:9:.:.:0,9,90 0/0:6,0:6:15:.:.:0,15,225 0/1:3,9:12:63:.:.:290,0,63 0/0:8,0:8:0:.:.:0,0,55 1/1:1,14:15:6:.:.:467,6,0 0/0:6,0:6:18:.:.:0,18,214 0/0:15,0:15:36:.:.:0,36,540 1/1:1,6:7:11:.:.:221,11,0 0/1:5,7:12:99:.:.:213,0,117 0/0:2,0:2:6:.:.:0,6,65 0/0:2,0:2:6:.:.:0,6,73 0/0:1,0:1:3:.:.:0,3,35 0/0:2,0:2:6:.:.:0,6,54 0/0:1,0:1:3:.:.:0,3,37 ./.:2,0:2 0/0:8,0:8:24:.:.:0,24,217 0/0:5,0:5:15:.:.:0,15,162 0/0:3,0:3:9:.:.:0,9,104 0/0:11,0:11:27:.:.:0,27,405 0/0:4,0:4:12:.:.:0,12,153 0/0:12,0:12:33:.:.:0,33,495 0/0:6,0:6:18:.:.:0,18,195 0/0:4,0:4:9:.:.:0,9,135 0/0:2,0:2:6:.:.:0,6,67 ./.:0,0:0 0/0:3,0:3:6:.:.:0,6,90 0/0:4,0:4:0:.:.:0,0,73 ./.:3,0:3 ./.:10,0:10 0/0:10,0:10:27:.:.:0,27,405 ./.:7,0:7 0/0:5,0:5:15:.:.:0,15,164 0/1:3,4:7:93:.:.:134,0,93 0/0:8,0:8:21:.:.:0,21,315 0/0:4,0:4:0:.:.:0,0,69 0/0:4,0:4:9:.:.:0,9,135 0/1:2,5:7:42:.:.:180,0,42 0/0:5,0:5:15:.:.:0,15,187 0/0:11,0:11:30:.:.:0,30,450 0/0:12,0:12:30:.:.:0,30,450 ./.:8,0:8 0/0:4,0:4:9:.:.:0,9,135 0/0:3,0:3:6:.:.:0,6,90 0/0:13,0:13:0:.:.:0,0,149 0/0:6,0:6:18:.:.:0,18,194 1/1:0,8:8:24:.:.:261,24,0 ./.:0,0:0 0/0:8,0:8:21:.:.:0,21,315 0/0:8,0:8:24:.:.:0,24,286 ./.:3,0:3 ./.:4,0:4 ./.:4,0:4 0/0:3,0:3:0:.:.:0,0,36 0/0:5,0:5:15:.:.:0,15,176 ./.:2,0:2 0/1:2,3:5:49:.:.:101,0,49 0/1:2,5:7:48:.:.:161,0,48 0/0:14,0:14:42:.:.:0,42,435 0/1:1,6:7:17:.:.:212,0,17 0/0:3,0:3:9:.:.:0,9,97 0/0:14,0:14:33:.:.:0,33,495 ./.:6,0:6 0/0:5,0:5:15:.:.:0,15,179 0/0:5,0:5:0:.:.:0,0,35 0/0:5,0:5:12:.:.:0,12,180 0/0:4,0:4:9:.:.:0,9,135 0/0:3,0:3:0:.:.:0,0,22 0/0:3,0:3:0:.:.:0,0,14 0/0:24,0:24:0:.:.:0,0,639 0/0:6,0:6:18:.:.:0,18,161 1/1:0,6:6:18:.:.:221,18,0 0/0:3,0:3:9:.:.:0,9,102 0/0:3,0:3:0:.:.:0,0,21 0/0:9,0:9:27:.:.:0,27,327 0/0:12,0:12:36:.:.:0,36,399 ./.:6,0:6 0/0:5,0:5:15:.:.:0,15,168 0/1:2,8:10:99:0|1:1103143_C_A:328,0,118 0/0:7,0:7:0:.:.:0,0,53 0/0:2,0:2:6:.:.:0,6,70 1/1:0,8:8:24:.:.:298,24,0 ./.:6,0:6 0/0:4,0:4:12:.:.:0,12,110 1 1104418 rs200237515 A C 323.72 . AC=1;AF=5.000e-03;AN=200;BaseQRankSum=0.641;ClippingRankSum=-2.517e+00;DB;DP=3206;FS=1.585;InbreedingCoeff=-0.0050;MLEAC=1;MLEAF=5.000e-03;MQ=60.00;MQRankSum=0.581;QD=8.30;ReadPosRankSum=-5.210e-01;SOR=1.022 GT:AD:DP:GQ:PL 0/0:24,0:24:72:0,72,834 0/0:39,0:39:99:0,102,1530 0/0:36,0:36:99:0,99,1225 0/0:39,0:39:99:0,99,1485 0/0:27,0:27:72:0,72,1080 0/0:38,0:38:99:0,99,1485 0/0:34,0:34:90:0,90,1350 0/0:29,0:29:81:0,81,1215 0/0:31,0:31:81:0,81,1075 0/0:37,0:37:81:0,81,1215 0/0:27,0:27:72:0,72,948 0/0:20,0:20:57:0,57,855 0/0:21,0:21:60:0,60,900 0/0:33,0:33:90:0,90,1350 0/0:28,0:28:72:0,72,1080 0/0:31,0:31:90:0,90,1350 0/0:31,0:31:81:0,81,1215 0/0:38,0:38:99:0,105,1575 0/0:34,0:34:99:0,99,1394 0/0:37,0:37:99:0,108,1620 0/0:39,0:39:99:0,102,1457 0/0:40,0:40:99:0,99,1485 0/0:25,0:25:60:0,60,900 0/0:38,0:38:99:0,99,1485 0/0:27,0:27:72:0,72,1080 0/0:35,0:35:99:0,99,1381 0/0:34,0:34:96:0,96,1440 0/0:34,0:34:81:0,81,1215 0/0:22,0:22:54:0,54,810 0/0:18,0:18:48:0,48,720 0/0:19,0:19:48:0,48,720 0/0:39,0:39:99:0,99,1455 0/0:26,0:26:72:0,72,1080 0/0:21,0:21:60:0,60,900 0/0:33,0:33:72:0,72,1080 0/0:41,0:41:99:0,99,1485 0/0:37,0:37:99:0,99,1485 0/1:26,13:39:99:366,0,859 0/0:33,0:33:81:0,81,1205 0/0:26,0:26:72:0,72,960 0/0:23,0:23:57:0,57,855 0/0:14,0:14:39:0,39,585 0/0:27,0:27:60:0,60,900 0/0:24,0:24:60:0,60,900 0/0:36,0:36:90:0,90,1350 0/0:42,0:42:99:0,102,1530 0/0:39,0:39:99:0,102,1515 0/0:40,0:40:99:0,99,1485 0/0:36,0:36:99:0,99,1485 0/0:14,0:14:39:0,39,585 0/0:37,0:37:99:0,99,1302 0/0:26,0:26:54:0,54,810 0/0:28,0:28:81:0,81,1215 0/0:36,0:36:90:0,90,1350 0/0:46,0:46:90:0,90,1350 0/0:25,0:25:60:0,60,900 0/0:50,0:50:99:0,102,1530 0/0:45,0:45:99:0,99,1485 0/0:31,0:31:84:0,84,1260 0/0:23,0:23:60:0,60,900 0/0:38,0:38:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:41,0:41:87:0,87,1454 0/0:20,0:20:48:0,48,699 0/0:31,0:31:81:0,81,1215 0/0:33,0:33:81:0,81,1215 0/0:18,0:18:39:0,39,585 0/0:20,0:20:60:0,60,728 0/0:24,0:24:60:0,60,900 0/0:24,0:24:63:0,63,945 0/0:32,0:32:87:0,87,1305 0/0:33,0:33:81:0,81,1215 0/0:40,0:40:99:0,108,1620 0/0:39,0:39:99:0,99,1281 0/0:43,0:43:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:28,0:28:72:0,72,1080 0/0:40,0:40:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:25,0:25:60:0,60,900 0/0:42,0:42:99:0,99,1485 0/0:33,0:33:93:0,93,1395 0/0:42,0:42:99:0,105,1575 0/0:37,0:37:99:0,99,1485 0/0:9,0:9:24:0,24,360 0/0:45,0:45:99:0,105,1575 0/0:41,0:41:99:0,99,1485 0/0:37,0:37:99:0,99,1344 0/0:13,0:13:39:0,39,473 0/0:23,0:23:61:0,61,807 0/0:33,0:33:48:0,48,1095 0/0:38,0:38:99:0,99,1387 0/0:22,0:22:60:0,60,900 0/0:33,0:33:90:0,90,1350 0/0:42,0:42:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:23,0:23:60:0,60,900 0/0:23,0:23:57:0,57,855 0/0:37,0:37:81:0,81,1215 0/0:38,0:38:99:0,99,1398 1 1104584 rs112695918 T C 1183.56 . AC=5;AF=0.025;AN=200;BaseQRankSum=-2.989e+00;ClippingRankSum=0.209;DB;DP=2455;FS=1.538;InbreedingCoeff=-0.0344;MLEAC=5;MLEAF=0.025;MQ=58.33;MQRankSum=-6.480e-01;QD=10.29;ReadPosRankSum=-1.088e+00;SOR=0.368 GT:AD:DP:GQ:PL 0/0:24,0:24:60:0,60,900 0/0:39,0:39:99:0,99,1485 0/0:40,0:40:81:0,81,1215 0/0:28,0:28:72:0,72,1080 0/0:21,0:21:45:0,45,675 0/0:46,0:46:90:0,90,1350 0/0:31,0:31:81:0,81,1215 0/0:30,0:30:60:0,60,900 0/0:24,0:24:54:0,54,810 0/1:9,6:15:99:110,0,235 0/0:19,0:19:45:0,45,675 0/0:20,0:20:41:0,41,689 0/0:10,0:10:18:0,18,270 0/0:27,0:27:60:0,60,900 0/0:22,0:22:51:0,51,765 0/0:24,0:24:39:0,39,585 0/0:23,0:23:39:0,39,585 0/0:36,0:36:81:0,81,1215 0/0:24,0:24:60:0,60,880 0/0:37,0:37:99:0,108,1620 0/0:23,0:23:48:0,48,720 0/1:21,16:37:99:414,0,661 0/0:14,0:14:27:0,27,405 0/0:38,0:38:99:0,99,1485 0/0:14,0:14:39:0,39,585 0/0:35,0:35:99:0,99,1381 0/0:25,0:25:57:0,57,855 0/0:29,0:29:58:0,58,1028 0/0:18,0:18:48:0,48,720 0/0:18,0:18:51:0,51,765 0/0:13,0:13:30:0,30,450 0/0:17,0:17:33:0,33,495 0/0:16,0:16:27:0,27,405 0/0:11,0:11:30:0,30,450 0/0:27,0:27:60:0,60,900 0/0:54,0:54:99:0,99,1485 0/0:25,0:25:72:0,72,970 0/0:28,0:28:55:0,55,990 0/0:22,0:22:54:0,54,810 0/0:18,0:18:42:0,42,630 0/0:14,0:14:33:0,33,495 0/0:10,0:10:24:0,24,360 0/0:16,0:16:0:0,0,154 0/1:7,8:15:99:228,0,223 0/0:13,0:13:0:0,0,198 0/0:28,0:28:75:0,75,1125 0/0:37,0:37:87:0,87,1305 0/0:43,0:43:99:0,102,1530 0/0:29,0:29:60:0,60,900 0/0:20,0:20:51:0,51,765 0/0:24,0:24:48:0,48,720 0/0:17,0:17:27:0,27,405 0/0:32,0:32:81:0,81,1215 0/0:22,0:22:48:0,48,720 0/0:18,0:18:36:0,36,540 0/0:6,0:6:18:0,18,203 0/0:50,0:50:93:0,93,1395 0/0:45,0:45:99:0,99,1485 0/0:13,0:13:21:0,21,315 0/0:21,0:21:48:0,48,720 0/0:29,0:29:51:0,51,765 0/0:32,0:32:60:0,60,900 0/1:11,9:20:99:189,0,345 0/0:16,0:16:42:0,42,630 0/0:19,0:19:42:0,42,630 0/0:17,0:17:39:0,39,585 0/0:15,0:15:27:0,27,405 0/0:23,0:23:39:0,39,585 0/0:20,0:20:42:0,42,686 0/0:18,0:18:24:0,24,360 0/0:26,0:26:48:0,48,720 0/0:20,0:20:45:0,45,675 0/0:32,0:32:60:0,60,900 0/0:39,0:39:60:0,60,900 0/0:33,0:33:72:0,72,1080 0/0:40,0:40:99:0,99,1485 0/0:15,0:15:36:0,36,540 0/0:40,0:40:99:0,99,1485 0/0:26,0:26:51:0,51,765 0/0:19,0:19:42:0,42,630 0/0:44,0:44:99:0,99,1485 0/0:23,0:23:39:0,39,585 0/0:24,0:24:54:0,54,810 0/0:27,0:27:45:0,45,675 0/0:7,0:7:12:0,12,180 0/0:45,0:45:99:0,105,1575 0/0:31,0:31:60:0,60,900 0/0:20,0:20:51:0,51,765 0/0:7,0:7:18:0,18,270 0/0:7,0:7:18:0,18,270 0/0:19,0:19:33:0,33,495 0/0:43,0:43:90:0,90,1350 0/0:13,0:13:27:0,27,405 0/0:4,0:4:0:0,0,64 0/0:27,0:27:72:0,72,1080 0/0:30,0:30:72:0,72,1080 0/0:16,0:16:33:0,33,495 0/0:19,0:19:45:0,45,675 0/0:26,0:26:72:0,72,1080 0/1:14,14:28:99:343,0,371 1 3477414 rs138354618 GGGCT G 7229.20 . AC=35;AF=0.184;AN=190;BaseQRankSum=0.00;ClippingRankSum=-6.120e-01;DB;DP=1162;FS=19.690;InbreedingCoeff=0.0614;MLEAC=43;MLEAF=0.226;MQ=49.96;MQRankSum=-1.741e+00;QD=20.77;ReadPosRankSum=0.00;SOR=0.256 GT:AD:DP:GQ:PL 1/1:0,4:4:12:180,12,0 0/1:9,9:18:99:332,0,502 0/0:12,0:12:0:0,0,220 0/0:15,0:15:33:0,33,495 0/0:14,0:14:39:0,39,585 0/0:16,0:16:36:0,36,540 0/0:8,0:8:21:0,21,315 1/1:0,7:7:21:298,21,0 0/0:7,0:7:15:0,15,225 0/0:6,0:6:0:0,0,14 0/0:9,0:9:0:0,0,96 0/0:7,0:7:15:0,15,225 0/1:15,5:20:99:165,0,803 0/0:12,0:12:18:0,18,270 0/0:4,0:4:3:0,3,45 0/0:7,0:7:15:0,15,225 0/0:5,0:5:15:0,15,186 0/0:13,0:13:0:0,0,313 0/0:10,0:10:0:0,0,68 0/0:39,0:39:81:0,81,1215 0/0:20,0:20:54:0,54,810 0/0:15,0:15:0:0,0,307 0/0:8,0:8:12:0,12,180 0/0:14,0:14:39:0,39,585 0/0:2,0:2:6:0,6,68 0/1:22,18:40:99:681,0,1172 0/0:15,0:15:33:0,33,495 0/0:5,0:5:15:0,15,168 0/0:5,0:5:12:0,12,180 0/0:6,0:6:0:0,0,71 0/1:3,4:7:99:154,0,164 0/0:5,0:5:15:0,15,187 ./.:1,0:1 1/1:0,5:5:15:225,15,0 0/0:9,0:9:0:0,0,108 0/0:11,0:11:27:0,27,405 0/0:10,0:10:0:0,0,78 0/0:8,0:8:0:0,0,72 0/1:5,4:9:99:153,0,260 0/1:2,4:6:99:162,0,106 0/0:9,0:9:0:0,0,164 ./.:5,0:5 0/0:14,0:14:30:0,30,450 0/0:4,0:4:9:0,9,135 1/1:0,8:8:24:349,24,0 1/1:0,13:13:39:563,39,0 0/0:10,0:10:15:0,15,225 0/1:8,10:18:99:335,0,440 0/1:7,10:17:99:388,0,350 0/0:5,0:5:15:0,15,158 0/1:8,6:14:99:207,0,453 ./.:8,0:8 0/0:5,0:5:15:0,15,170 0/0:11,0:11:0:0,0,176 0/1:12,6:18:99:189,0,602 0/1:11,8:19:99:294,0,556 0/0:27,0:27:60:0,60,900 0/1:13,5:18:99:171,0,693 0/0:8,0:8:15:0,15,225 0/0:7,0:7:15:0,15,225 0/0:14,0:14:36:0,36,540 0/1:5,5:10:99:186,0,273 0/0:5,0:5:0:0,0,19 0/1:2,4:6:99:153,0,106 0/0:6,0:6:15:0,15,225 0/0:8,0:8:0:0,0,162 0/0:13,0:13:33:0,33,495 0/0:9,0:9:21:0,21,315 ./.:6,0:6 ./.:4,0:4 1/1:0,7:7:21:315,21,0 0/0:4,0:4:0:0,0,79 0/0:15,0:15:39:0,39,585 0/0:12,0:12:0:0,0,195 0/1:5,5:10:99:195,0,279 0/1:10,9:19:99:338,0,555 0/0:4,0:4:0:0,0,35 0/0:45,0:45:99:0,99,1485 0/1:1,7:8:37:282,0,37 0/0:3,0:3:9:0,9,111 0/0:22,0:22:48:0,48,720 0/0:6,0:6:0:0,0,61 0/0:12,0:12:0:0,0,220 0/0:9,0:9:0:0,0,100 0/0:4,0:4:12:0,12,142 0/0:19,0:19:45:0,45,675 0/0:15,0:15:42:0,42,630 0/1:2,6:8:99:246,0,100 1/1:0,4:4:12:168,12,0 0/1:1,9:10:32:375,0,32 0/0:11,0:11:30:0,30,450 0/0:22,0:22:48:0,48,720 0/0:6,0:6:0:0,0,140 0/0:15,0:15:42:0,42,630 0/0:15,0:15:42:0,42,630 0/1:12,7:19:99:258,0,612 0/0:10,0:10:24:0,24,360 0/0:6,0:6:18:0,18,220 0/0:5,0:5:9:0,9,135 0/1:2,4:6:99:162,0,99 1 9211528 . C T 97.29 . AC=1;AF=5.051e-03;AN=198;BaseQRankSum=-7.200e-01;ClippingRankSum=0.720;DP=974;FS=0.000;InbreedingCoeff=-0.0281;MLEAC=1;MLEAF=5.051e-03;MQ=60.00;MQRankSum=0.00;QD=16.22;ReadPosRankSum=-7.200e-01;SOR=1.329 GT:AD:DP:GQ:PL 0/0:10,0:10:30:0,30,346 0/0:8,0:8:15:0,15,225 0/0:22,0:22:57:0,57,855 0/0:10,0:10:27:0,27,405 0/0:6,0:6:12:0,12,180 0/0:15,0:15:36:0,36,540 0/0:5,0:5:15:0,15,153 0/0:5,0:5:15:0,15,163 0/0:11,0:11:21:0,21,366 0/0:2,0:2:3:0,3,45 0/0:7,0:7:18:0,18,270 0/0:6,0:6:15:0,15,225 ./.:0,0:0 0/0:8,0:8:18:0,18,270 0/0:5,0:5:15:0,15,166 0/0:10,0:10:30:0,30,384 0/0:8,0:8:21:0,21,315 0/0:13,0:13:39:0,39,458 0/0:14,0:14:30:0,30,450 0/0:32,0:32:93:0,93,1395 0/0:14,0:14:36:0,36,540 0/0:13,0:13:39:0,39,481 0/0:6,0:6:18:0,18,223 0/0:18,0:18:42:0,42,630 0/0:6,0:6:18:0,18,210 0/0:14,0:14:42:0,42,483 0/0:10,0:10:24:0,24,360 0/0:7,0:7:18:0,18,270 0/0:7,0:7:21:0,21,247 0/0:4,0:4:9:0,9,135 0/0:2,0:2:6:0,6,71 0/0:8,0:8:21:0,21,315 0/0:14,0:14:33:0,33,495 0/0:1,0:1:3:0,3,35 0/0:9,0:9:24:0,24,360 0/0:20,0:20:45:0,45,675 0/0:8,0:8:18:0,18,270 0/0:12,0:12:33:0,33,495 0/0:5,0:5:12:0,12,180 0/0:9,0:9:24:0,24,360 0/0:1,0:1:3:0,3,29 0/0:4,0:4:9:0,9,135 0/0:2,0:2:6:0,6,74 0/0:7,0:7:18:0,18,270 0/0:3,0:3:9:0,9,105 0/0:8,0:8:18:0,18,270 0/0:13,0:13:36:0,36,540 0/0:13,0:13:39:0,39,460 0/0:9,0:9:27:0,27,335 0/0:5,0:5:3:0,3,145 0/0:7,0:7:18:0,18,270 0/0:11,0:11:21:0,21,315 0/0:10,0:10:30:0,30,383 0/0:9,0:9:21:0,21,315 0/0:5,0:5:12:0,12,180 0/0:3,0:3:6:0,6,90 0/0:31,0:31:81:0,81,1215 0/0:15,0:15:45:0,45,565 0/0:4,0:4:12:0,12,126 0/0:10,0:10:30:0,30,369 0/0:7,0:7:21:0,21,246 0/0:16,0:16:48:0,48,626 0/0:12,0:12:30:0,30,450 0/1:2,4:6:61:139,0,61 0/0:7,0:7:21:0,21,254 0/0:10,0:10:27:0,27,405 0/0:2,0:2:6:0,6,74 0/0:5,0:5:9:0,9,135 0/0:7,0:7:12:0,12,180 0/0:7,0:7:18:0,18,270 0/0:7,0:7:15:0,15,225 0/0:8,0:8:24:0,24,291 0/0:11,0:11:27:0,27,405 0/0:12,0:12:30:0,30,450 0/0:14,0:14:36:0,36,540 0/0:22,0:22:60:0,60,900 0/0:10,0:10:21:0,21,315 0/0:31,0:31:90:0,90,1037 0/0:16,0:16:42:0,42,630 0/0:13,0:13:39:0,39,476 0/0:16,0:16:45:0,45,675 0/0:9,0:9:27:0,27,333 0/0:12,0:12:33:0,33,495 0/0:10,0:10:27:0,27,405 0/0:3,0:3:9:0,9,109 0/0:32,0:32:81:0,81,1215 0/0:15,0:15:45:0,45,522 0/0:10,0:10:18:0,18,270 0/0:3,0:3:9:0,9,116 0/0:1,0:1:3:0,3,32 0/0:10,0:10:24:0,24,360 0/0:23,0:23:56:0,56,725 0/0:5,0:5:15:0,15,168 0/0:1,0:1:3:0,3,33 0/0:4,0:4:12:0,12,140 0/0:14,0:14:39:0,39,585 0/0:6,0:6:18:0,18,209 0/0:9,0:9:24:0,24,360 0/0:8,0:8:7:0,7,255 0/0:6,0:6:18:0,18,172 1 11072117 rs9430335 C T 19556.08 . AC=116;AF=0.734;AN=158;BaseQRankSum=-5.500e-01;ClippingRankSum=-3.220e-01;DB;DP=805;FS=0.000;InbreedingCoeff=0.2066;MLEAC=126;MLEAF=0.797;MQ=58.71;MQRankSum=0.212;QD=29.32;ReadPosRankSum=0.684;SOR=2.587 GT:AD:DP:GQ:PL ./.:1,0:1 1/1:0,18:18:54:639,54,0 0/1:2,8:10:42:272,0,42 1/1:0,10:10:30:354,30,0 1/1:0,7:7:21:260,21,0 1/1:0,15:15:45:526,45,0 0/0:7,0:7:0:0,0,126 0/0:6,0:6:18:0,18,222 1/1:0,8:8:24:278,24,0 0/1:1,10:11:2:312,0,2 1/1:0,7:7:21:221,21,0 0/0:3,0:3:0:0,0,44 ./.:2,0:2 0/0:9,0:9:0:0,0,121 1/1:0,8:8:24:290,24,0 1/1:0,5:5:15:179,15,0 1/1:0,11:11:33:413,33,0 0/0:10,0:10:0:0,0,94 0/1:8,5:13:99:117,0,214 1/1:0,9:9:27:267,27,0 1/1:0,13:13:39:471,39,0 1/1:0,16:16:47:530,47,0 1/1:0,8:8:24:266,24,0 1/1:0,18:18:54:641,54,0 0/1:3,5:8:81:150,0,81:5,4:9:99:108,0,142 1/1:0,6:6:18:223,18,0 1/1:0,7:7:21:227,21,0 0/1:6,4:10:99:111,0,177 ./.:4,0:4 0/0:1,0:1:3:0,3,30 ./.:3,0:3 ./.:4,0:4 1/1:0,4:4:12:143,12,0 ./.:2,0:2 0/1:3,7:10:86:218,0,86 0/1:3,7:10:91:220,0,91 1/1:0,7:7:21:249,21,0 1/1:0,6:6:18:214,18,0 1/1:0,4:4:12:139,12,0 0/1:3,4:7:92:124,0,92 ./.:5,0:5 ./.:3,0:3 1/1:0,6:6:18:221,18,0 1/1:0,6:6:18:197,18,0 ./.:2,0:2 1/1:0,12:12:36:417,36,0 1/1:1,13:14:8:418,8,0 ./.:3,0:3 0/0:6,0:6:0:0,0,8 1/1:0,12:12:36:418,36,0 1/1:0,4:4:12:152,12,0 1/1:0,12:12:36:438,36,0 ./.:3,0:3 0/1:2,4:6:33:127,0,33 1/1:0,12:12:36:416,36,0 1/1:0,7:7:21:255,21,0 0/0:3,0:3:9:0,9,108 1/1:0,7:7:21:226,21,0 0/0:4,0:4:0:0,0,3 1/1:0,8:8:24:291,24,0 0/0:5,0:5:15:0,15,177 0/1:5,8:13:99:259,0,124 0/1:7,5:12:99:139,0,230 1/1:0,10:10:30:346,30,0 1/1:0,17:17:51:578,51,0 1/1:0,5:5:15:190,15,0 1/1:1,14:15:34:443,34,0 0/1:3,4:7:86:131,0,86 ./.:3,0:3 0/1:6,9:15:99:291,0,174 1/1:0,6:6:18:193,18,0 0/1:3,6:9:84:204,0,84 1/1:0,4:4:12:146,12,0 ./.:3,0:3 0/1:10,15:25:99:442,0,286 0/1:8,6:14:99:189,0,245 1/1:0,14:14:42:504,42,0 ./.:3,0:3 ./.:3,0:3 0/1:3,6:9:88:194,0,88 1/1:0,17:17:51:583,51,0 ./.:3,0:3 ./.:1,0:1 1/1:0,12:12:36:437,36,0 1/1:0,15:15:45:551,45,0 ./.:3,0:3 1/1:0,6:6:18:213,18,0 1/1:0,9:9:27:331,27,0 ./.:5,0:5 1 11072249 rs115953412 G A 369.31 . AC=2;AF=0.010;AN=200;BaseQRankSum=0.550;ClippingRankSum=0.163;DB;DP=1433;FS=1.603;InbreedingCoeff=-0.0246;MLEAC=2;MLEAF=0.010;MQ=60.00;MQRankSum=0.054;QD=16.06;ReadPosRankSum=1.75;SOR=1.075 GT:AD:DP:GQ:PL 0/0:7,0:7:21:0,21,263 0/0:27,0:27:81:0,81,1001 0/0:24,0:24:60:0,60,801 0/0:20,0:20:23:0,23,679 0/0:12,0:12:33:0,33,495 0/0:31,0:31:72:0,72,1080 0/0:12,0:12:33:0,33,495 0/0:6,0:6:15:0,15,225 0/0:15,0:15:45:0,45,547 0/0:18,0:18:45:0,45,675 0/0:9,0:9:27:0,27,305 0/0:6,0:6:18:0,18,226 0/0:6,0:6:15:0,15,225 0/0:14,0:14:30:0,30,450 0/0:8,0:8:24:0,24,303 0/0:10,0:10:24:0,24,360 0/0:15,0:15:36:0,36,540 0/0:16,0:16:45:0,45,675 0/0:22,0:22:60:0,60,900 0/0:12,0:12:0:0,0,209 0/0:24,0:24:60:0,60,900 0/0:20,0:20:51:0,51,765 0/0:11,0:11:27:0,27,405 0/0:39,0:39:93:0,93,1395 0/0:14,0:14:5:0,5,444 0/0:35,0:35:90:0,90,1350 0/0:21,0:21:54:0,54,810 0/1:3,4:7:88:135,0,88 0/0:11,0:11:33:0,33,396 0/0:6,0:6:15:0,15,225 0/0:9,0:9:18:0,18,270 0/0:21,0:21:57:0,57,855 0/0:8,0:8:24:0,24,276 0/0:7,0:7:21:0,21,238 0/0:18,0:18:45:0,45,675 0/0:30,0:30:66:0,66,990 0/0:15,0:15:36:0,36,540 0/0:11,0:11:0:0,0,146 0/0:20,0:20:45:0,45,675 0/0:15,0:15:36:0,36,540 0/0:8,0:8:18:0,18,270 0/0:9,0:9:24:0,24,360 0/0:10,0:10:27:0,27,405 0/0:8,0:8:21:0,21,315 0/0:9,0:9:21:0,21,315 0/0:18,0:18:54:0,54,664 0/0:19,0:19:45:0,45,675 0/0:20,0:20:45:0,45,675 0/0:8,0:8:21:0,21,315 0/0:2,0:2:3:0,3,45 0/0:12,0:12:33:0,33,495 0/0:7,0:7:15:0,15,225 0/0:7,0:7:15:0,15,225 0/0:5,0:5:15:0,15,198 0/0:19,0:19:51:0,51,765 0/0:4,0:4:6:0,6,90 0/0:17,0:17:42:0,42,630 0/0:26,0:26:60:0,60,874 0/0:5,0:5:15:0,15,156 0/0:10,0:10:30:0,30,370 0/0:23,0:23:60:0,60,900 0/0:14,0:14:27:0,27,405 0/0:11,0:11:21:0,21,315 0/0:6,0:6:18:0,18,232 0/0:9,0:9:24:0,24,360 0/0:18,0:18:42:0,42,630 0/0:12,0:12:36:0,36,433 0/0:6,0:6:12:0,12,180 0/0:15,0:15:39:0,39,585 0/0:7,0:7:21:0,21,248 0/0:12,0:12:30:0,30,450 0/0:14,0:14:30:0,30,450 0/0:19,0:19:48:0,48,720 0/0:12,0:12:21:0,21,315 0/0:14,0:14:36:0,36,540 0/0:25,0:25:72:0,72,1080 0/0:7,0:7:18:0,18,270 0/0:43,0:43:84:0,84,1260 0/0:19,0:19:42:0,42,630 0/0:7,0:7:18:0,18,270 0/1:6,10:16:99:293,0,173 0/0:14,0:14:36:0,36,540 0/0:16,0:16:45:0,45,675 0/0:12,0:12:27:0,27,405 0/0:3,0:3:9:0,9,112 0/0:40,0:40:99:0,99,1472 0/0:19,0:19:45:0,45,675 0/0:13,0:13:27:0,27,405 0/0:5,0:5:15:0,15,191 0/0:9,0:9:27:0,27,325 0/0:11,0:11:27:0,27,405 0/0:25,0:25:51:0,51,765 0/0:3,0:3:6:0,6,90 0/0:3,0:3:6:0,6,90 0/0:17,0:17:45:0,45,675 0/0:26,0:26:63:0,63,945 0/0:8,0:8:24:0,24,298 0/0:10,0:10:30:0,30,364 0/0:18,0:18:48:0,48,720 0/0:17,0:17:39:0,39,585 1 11072532 rs144319432 GC G 340.73 . AC=1;AF=5.000e-03;AN=200;BaseQRankSum=0.692;ClippingRankSum=0.297;DB;DP=2999;FS=1.768;InbreedingCoeff=-0.0057;MLEAC=1;MLEAF=5.000e-03;MQ=60.98;MQRankSum=1.55;QD=15.49;ReadPosRankSum=-1.154e+00;SOR=1.445 GT:AD:DP:GQ:PL 0/0:24,0:24:60:0,60,900 0/0:41,0:41:99:0,99,1485 0/0:39,0:39:99:0,102,1530 0/0:41,0:41:90:0,90,1350 0/0:38,0:38:90:0,90,1350 0/0:44,0:44:99:0,102,1530 0/0:23,0:23:51:0,51,765 0/0:24,0:24:54:0,54,810 0/0:35,0:35:81:0,81,1215 0/0:48,0:48:90:0,90,1350 0/0:16,0:16:45:0,45,675 0/1:10,12:22:99:383,0,307 0/0:14,0:14:36:0,36,540 0/0:19,0:19:43:0,43,646 0/0:33,0:33:84:0,84,1260 0/0:23,0:23:36:0,36,540 0/0:29,0:29:72:0,72,1080 0/0:42,0:42:99:0,102,1530 0/0:40,0:40:99:0,105,1575 0/0:44,0:44:99:0,102,1406 0/0:41,0:41:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:32,0:32:66:0,66,1095 0/0:46,0:46:99:0,120,1800 0/0:24,0:24:54:0,54,810 0/0:47,0:47:99:0,114,1710 0/0:21,0:21:57:0,57,855 0/0:19,0:19:33:0,33,495 0/0:23,0:23:54:0,54,810 0/0:27,0:27:66:0,66,990 0/0:22,0:22:48:0,48,720 0/0:39,0:39:99:0,99,1485 0/0:17,0:17:42:0,42,630 0/0:17,0:17:39:0,39,585 0/0:37,0:37:96:0,96,1440 0/0:39,0:39:99:0,99,1485 0/0:32,0:32:81:0,81,1215 0/0:26,0:26:57:0,57,855 0/0:24,0:24:51:0,51,765 0/0:36,0:36:90:0,90,1350 0/0:14,0:14:39:0,39,585 0/0:18,0:18:45:0,45,675 0/0:24,0:24:60:0,60,900 0/0:25,0:25:54:0,54,810 0/0:26,0:26:51:0,51,765 0/0:39,0:39:99:0,99,1485 0/0:37,0:37:81:0,81,1215 0/0:42,0:42:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:19,0:19:48:0,48,720 0/0:15,0:15:45:0,45,551 0/0:37,0:37:87:0,87,1305 0/0:27,0:27:54:0,54,810 0/0:35,0:35:81:0,81,1215 0/0:50,0:50:90:0,90,1350 0/0:5,0:5:12:0,12,180 0/0:40,0:40:99:0,99,1416 0/0:40,0:40:99:0,99,1485 0/0:22,0:22:54:0,54,810 0/0:37,0:37:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:30,0:30:72:0,72,1080 0/0:23,0:23:60:0,60,900 0/0:19,0:19:54:0,54,810 0/0:24,0:24:60:0,60,900 0/0:28,0:28:78:0,78,1170 0/0:25,0:25:60:0,60,900 0/0:18,0:18:45:0,45,675 0/0:23,0:23:46:0,46,728 0/0:18,0:18:39:0,39,585 0/0:36,0:36:90:0,90,1350 0/0:28,0:28:60:0,60,900 0/0:39,0:39:99:0,102,1530 0/0:38,0:38:99:0,99,1485 0/0:39,0:39:93:0,93,1395 0/0:38,0:38:99:0,99,1333 0/0:30,0:30:75:0,75,1125 0/0:46,0:46:99:0,99,1485 0/0:37,0:37:99:0,99,1345 0/0:17,0:17:45:0,45,675 0/0:45,0:45:99:0,105,1575 0/0:27,0:27:60:0,60,900 0/0:33,0:33:81:0,81,1215 0/0:25,0:25:63:0,63,945 0/0:6,0:6:12:0,12,180 0/0:39,0:39:99:0,99,1485 0/0:40,0:40:99:0,102,1530 0/0:41,0:41:99:0,99,1485 0/0:18,0:18:42:0,42,630 0/0:18,0:18:39:0,39,585 0/0:36,0:36:87:0,87,1305 0/0:40,0:40:99:0,99,1292 0/0:16,0:16:42:0,42,630 0/0:13,0:13:24:0,24,360 0/0:39,0:39:87:0,87,1305 0/0:35,0:35:84:0,84,1260 0/0:17,0:17:36:0,36,540 0/0:22,0:22:45:0,45,675 0/0:25,0:25:60:0,60,900 0/0:29,0:29:72:0,72,1080 1 11072579 rs968545 T C 96349.11 . AC=191;AF=0.955;AN=200;BaseQRankSum=-2.660e-01;ClippingRankSum=-5.030e-01;DB;DP=2993;FS=0.000;InbreedingCoeff=-0.0472;MLEAC=191;MLEAF=0.955;MQ=59.15;MQRankSum=0.00;QD=32.52;ReadPosRankSum=0.550;SOR=0.629 GT:AD:DP:GQ:PL 1/1:0,19:19:57:689,57,0 1/1:0,48:48:99:1693,144,0 1/1:0,26:26:78:873,78,0 1/1:0,36:36:99:1259,107,0 1/1:0,22:22:66:798,66,0 1/1:0,46:46:99:1572,137,0 1/1:0,25:25:75:923,75,0 1/1:0,29:29:87:998,87,0 1/1:0,27:27:81:956,81,0 1/1:1,65:66:99:2129,169,0 1/1:0,11:11:33:412,33,0 1/1:0,18:18:54:700,54,0 1/1:0,11:11:33:424,33,0 0/1:9,9:18:99:258,0,270 1/1:0,20:20:60:719,60,0 1/1:0,19:19:57:650,57,0 1/1:0,29:29:87:1028,87,0 1/1:0,25:25:75:897,75,0 0/1:21,33:54:99:969,0,525 1/1:0,35:35:99:1198,105,0 1/1:0,31:31:93:1088,93,0 1/1:2,43:45:68:1415,68,0 1/1:0,21:21:63:736,63,0 1/1:0,70:70:99:2452,210,0 1/1:0,21:21:63:781,63,0 1/1:0,55:55:99:1840,165,0 1/1:0,19:19:57:694,57,0 1/1:0,27:27:81:984,81,0 1/1:0,21:21:63:772,63,0 0/1:13,13:26:99:396,0,421 1/1:0,10:10:30:379,30,0 1/1:0,29:29:87:1068,87,0 1/1:0,21:21:63:742,63,0 1/1:0,20:20:60:711,60,0 1/1:0,33:33:99:1232,99,0 0/1:33,22:55:99:591,0,1045 1/1:0,19:19:56:656,56,0 1/1:0,24:24:72:888,72,0 0/1:15,23:38:99:710,0,464 1/1:0,21:21:63:758,63,0 0/1:13,7:20:99:189,0,398 1/1:0,16:16:48:584,48,0 1/1:0,22:22:66:759,66,0 1/1:0,18:18:54:678,54,0 1/1:0,17:17:51:591,51,0 1/1:1,35:36:98:1196,98,0 1/1:0,33:33:98:1070,98,0 1/1:0,42:42:99:1438,126,0 1/1:0,23:23:69:812,69,0 1/1:0,19:19:57:728,57,0 1/1:1,27:28:49:911,49,0 1/1:0,17:17:51:650,51,0 1/1:0,24:24:72:853,72,0 1/1:0,32:32:96:1206,96,0 1/1:0,36:36:99:1306,108,0 1/1:0,15:15:45:541,45,0 1/1:0,42:42:99:1307,124,0 1/1:0,50:50:99:1766,150,0 1/1:0,16:16:48:549,48,0 1/1:0,21:21:63:793,63,0 1/1:0,34:34:99:1192,102,0 1/1:0,29:29:87:1024,87,0 1/1:0,25:25:75:863,75,0 1/1:0,21:21:62:717,62,0 1/1:0,26:26:78:966,78,0 1/1:0,37:37:99:1345,111,0 1/1:0,23:23:69:813,69,0 0/1:13,8:21:99:224,0,423 1/1:0,16:16:48:519,48,0 1/1:0,21:21:63:726,63,0 1/1:0,25:25:75:928,75,0 1/1:0,19:19:57:701,57,0 0/1:31,15:46:99:380,0,1010 1/1:0,43:43:99:1535,129,0 1/1:0,41:41:99:1454,122,0 1/1:0,44:44:99:1473,132,0 1/1:0,21:21:63:735,63,0 1/1:0,91:91:99:3101,272,0 1/1:0,31:31:93:1067,93,0 1/1:0,15:15:45:581,45,0 0/1:28,29:57:99:784,0,885 1/1:0,38:38:99:1324,113,0 1/1:0,29:29:86:1004,86,0 1/1:0,24:24:72:838,72,0 1/1:0,7:7:21:254,21,0 1/1:0,83:83:99:2899,249,0 1/1:1,55:56:99:1836,158,0 1/1:0,34:34:99:1192,102,0 1/1:0,13:13:39:429,39,0 1/1:0,12:12:36:438,36,0 1/1:0,30:30:90:1045,90,0 1/1:0,50:50:99:1707,149,0 1/1:0,14:14:42:485,42,0 1/1:0,9:9:27:322,27,0 1/1:0,42:42:99:1509,126,0 1/1:1,30:31:59:962,59,0 1/1:0,28:28:84:1078,84,0 1/1:0,22:22:66:839,66,0 1/1:0,18:18:54:644,54,0 1/1:0,20:20:60:597,60,0 1 11072699 . G A 255.83 . AC=1;AF=5.000e-03;AN=200;BaseQRankSum=1.68;ClippingRankSum=0.488;DP=2025;FS=4.393;InbreedingCoeff=-0.0091;MLEAC=1;MLEAF=5.000e-03;MQ=57.23;MQRankSum=-5.970e-01;QD=15.99;ReadPosRankSum=-9.220e-01;SOR=0.842 GT:AD:DP:GQ:PL 0/0:14,0:14:18:0,18,270 0/0:30,0:30:54:0,54,810 0/0:23,0:23:57:0,57,855 0/0:21,0:21:57:0,57,855 0/0:18,0:18:45:0,45,675 0/0:28,0:28:60:0,60,900 0/0:27,0:27:51:0,51,765 0/0:14,0:14:33:0,33,495 0/0:14,0:14:36:0,36,540 0/0:4,0:4:12:0,12,142 0/0:19,0:19:48:0,48,720 0/0:17,0:17:33:0,33,495 0/1:6,10:16:99:298,0,124 0/0:21,0:21:51:0,51,765 0/0:7,0:7:18:0,18,270 0/0:13,0:13:33:0,33,495 0/0:18,0:18:48:0,48,720 0/0:15,0:15:33:0,33,495 0/0:28,0:28:72:0,72,1080 0/0:37,0:37:99:0,99,1326 0/0:25,0:25:54:0,54,810 0/0:35,0:35:99:0,99,1485 0/0:12,0:12:27:0,27,405 0/0:36,0:36:84:0,84,1260 0/0:14,0:14:42:0,42,455 0/0:43,0:43:99:0,99,1464 0/0:13,0:13:33:0,33,495 0/0:10,0:10:0:0,0,277 0/0:13,0:13:27:0,27,405 0/0:21,0:21:42:0,42,630 0/0:7,0:7:15:0,15,225 0/0:20,0:20:48:0,48,720 0/0:8,0:8:24:0,24,277 0/0:16,0:16:45:0,45,675 0/0:32,0:32:81:0,81,1215 0/0:44,0:44:99:0,99,1485 0/0:11,0:11:18:0,18,270 0/0:20,0:20:60:0,60,749 0/0:16,0:16:39:0,39,585 0/0:16,0:16:42:0,42,630 0/0:7,0:7:21:0,21,234 0/0:12,0:12:36:0,36,445 0/0:18,0:18:45:0,45,675 0/0:9,0:9:27:0,27,326 0/0:22,0:22:54:0,54,810 0/0:33,0:33:81:0,81,1215 0/0:19,0:19:42:0,42,630 0/0:26,0:26:51:0,51,765 0/0:24,0:24:51:0,51,765 0/0:10,0:10:21:0,21,315 0/0:12,0:12:36:0,36,381 0/0:20,0:20:45:0,45,675 0/0:14,0:14:33:0,33,495 0/0:18,0:18:28:0,28,578 0/0:22,0:22:27:0,27,405 0/0:17,0:17:48:0,48,720 0/0:36,0:36:72:0,72,1080 0/0:42,0:42:99:0,99,1485 0/0:15,0:15:36:0,36,540 0/0:13,0:13:33:0,33,495 0/0:27,0:27:72:0,72,1080 0/0:17,0:17:39:0,39,585 0/0:16,0:16:39:0,39,585 0/0:16,0:16:33:0,33,495 0/0:7,0:7:12:0,12,180 0/0:12,0:12:27:0,27,405 0/0:13,0:13:33:0,33,495 0/0:15,0:15:33:0,33,495 0/0:16,0:16:36:0,36,540 0/0:13,0:13:27:0,27,405 0/0:22,0:22:60:0,60,900 0/0:19,0:19:36:0,36,540 0/0:23,0:23:54:0,54,810 0/0:29,0:29:72:0,72,1080 0/0:23,0:23:54:0,54,810 0/0:39,0:39:90:0,90,1350 0/0:14,0:14:30:0,30,450 0/0:54,0:54:99:0,108,1620 0/0:24,0:24:52:0,52,781 0/0:16,0:16:42:0,42,630 0/0:33,0:33:72:0,72,1080 0/0:23,0:23:60:0,60,900 0/0:22,0:22:63:0,63,945 0/0:15,0:15:45:0,45,492 0/0:4,0:4:12:0,12,142 0/0:42,0:42:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:20,0:20:51:0,51,765 0/0:16,0:16:45:0,45,675 0/0:15,0:15:39:0,39,585 0/0:23,0:23:51:0,51,765 0/0:36,0:36:99:0,99,1485 0/0:10,0:10:24:0,24,360 0/0:20,0:20:48:0,48,720 0/0:21,0:21:57:0,57,855 0/0:20,0:20:30:0,30,450 0/0:16,0:16:45:0,45,675 0/0:17,0:17:33:0,33,495 0/0:20,0:20:60:0,60,733 0/0:11,0:11:24:0,24,360 1 11072720 . G A 159.78 . AC=1;AF=5.000e-03;AN=200;BaseQRankSum=-1.377e+00;ClippingRankSum=-2.088e+00;DP=1798;FS=2.162;InbreedingCoeff=-0.0080;MLEAC=1;MLEAF=5.000e-03;MQ=56.30;MQRankSum=-4.000e-01;QD=8.88;ReadPosRankSum=0.311;SOR=0.223 GT:AD:DP:GQ:PL 0/0:9,0:9:21:0,21,315 0/0:22,0:22:45:0,45,675 0/0:18,0:18:36:0,36,540 0/0:20,0:20:45:0,45,675 0/0:18,0:18:39:0,39,585 0/0:24,0:24:48:0,48,720 0/0:15,0:15:33:0,33,495 0/0:17,0:17:42:0,42,630 0/0:17,0:17:39:0,39,585 0/0:3,0:3:6:0,6,90 0/0:14,0:14:36:0,36,540 0/0:10,0:10:24:0,24,360 0/0:18,0:18:45:0,45,675 0/0:11,0:11:27:0,27,405 0/0:9,0:9:24:0,24,360 0/0:13,0:13:30:0,30,450 0/0:23,0:23:54:0,54,810 0/0:20,0:20:54:0,54,810 0/0:19,0:19:45:0,45,675 0/0:33,0:33:81:0,81,1215 0/0:17,0:17:48:0,48,720 0/0:40,0:40:81:0,81,1215 0/0:15,0:15:30:0,30,450 0/0:42,0:42:99:0,102,1530 0/0:16,0:16:33:0,33,495 0/0:35,0:35:81:0,81,1215 0/0:16,0:16:33:0,33,495 0/0:13,0:13:30:0,30,450 0/0:10,0:10:18:0,18,270 0/0:14,0:14:30:0,30,450 0/0:9,0:9:21:0,21,315 0/0:20,0:20:42:0,42,630 0/0:9,0:9:21:0,21,315 0/0:13,0:13:30:0,30,450 0/0:27,0:27:54:0,54,810 0/0:35,0:35:81:0,81,1215 0/0:11,0:11:33:0,33,408 0/0:23,0:23:33:0,33,495 0/0:9,0:9:18:0,18,270 0/0:16,0:16:39:0,39,585 0/0:7,0:7:12:0,12,180 0/0:13,0:13:27:0,27,405 0/0:11,0:11:21:0,21,315 0/0:11,0:11:24:0,24,360 0/0:15,0:15:39:0,39,585 0/0:24,0:24:48:0,48,720 0/0:16,0:16:42:0,42,630 0/0:17,0:17:51:0,51,617 0/0:16,0:16:32:0,32,524 0/0:11,0:11:27:0,27,405 0/0:15,0:15:27:0,27,405 0/0:16,0:16:36:0,36,540 0/0:12,0:12:24:0,24,360 0/0:17,0:17:45:0,45,675 0/0:14,0:14:36:0,36,540 0/0:19,0:19:45:0,45,675 0/0:26,0:26:60:0,60,900 0/0:41,0:41:81:0,81,1215 0/0:9,0:9:18:0,18,270 0/0:18,0:18:45:0,45,675 0/0:28,0:28:60:0,60,900 0/0:21,0:21:48:0,48,720 0/0:20,0:20:42:0,42,630 0/0:14,0:14:36:0,36,540 0/0:12,0:12:30:0,30,450 0/0:12,0:12:24:0,24,360 0/0:15,0:15:45:0,45,557 0/0:10,0:10:24:0,24,360 0/0:10,0:10:21:0,21,315 0/0:8,0:8:21:0,21,315 0/0:20,0:20:45:0,45,675 0/0:14,0:14:27:0,27,405 0/0:24,0:24:45:0,45,840 0/0:27,0:27:60:0,60,900 0/0:19,0:19:36:0,36,540 0/0:28,0:28:54:0,54,810 0/0:11,0:11:27:0,27,405 0/0:54,0:54:99:0,108,1620 0/0:23,0:23:60:0,60,900 0/0:11,0:11:21:0,21,315 0/0:32,0:32:81:0,81,1215 0/1:10,8:18:99:202,0,299 0/0:18,0:18:36:0,36,540 0/0:17,0:17:36:0,36,540 0/0:4,0:4:12:0,12,143 0/0:42,0:42:99:0,99,1485 0/0:34,0:34:60:0,60,900 0/0:22,0:22:57:0,57,855 0/0:5,0:5:12:0,12,180 0/0:15,0:15:30:0,30,450 0/0:17,0:17:30:0,30,450 0/0:36,0:36:72:0,72,1080 0/0:15,0:15:36:0,36,540 0/0:15,0:15:45:0,45,536 0/0:17,0:17:45:0,45,675 0/0:14,0:14:36:0,36,540 0/0:12,0:12:33:0,33,495 0/0:13,0:13:36:0,36,540 0/0:15,0:15:42:0,42,630 0/0:5,0:5:12:0,12,180 1 11072885 rs4133584 C T 23890.39 . AC=131;AF=0.736;AN=178;BaseQRankSum=1.18;ClippingRankSum=0.198;DB;DP=928;FS=0.000;InbreedingCoeff=0.1649;MLEAC=139;MLEAF=0.781;MQ=60.00;MQRankSum=0.067;QD=30.28;ReadPosRankSum=0.550;SOR=0.873 GT:AD:DP:GQ:PL 1/1:0,4:4:12:139,12,0 1/1:0,6:6:18:236,18,0 0/0:12,0:12:0:0,0,39 1/1:0,14:14:42:511,42,0 1/1:0,5:5:15:198,15,0 1/1:0,14:14:42:495,42,0 0/0:7,0:7:0:0,0,165 0/0:8,0:8:18:0,18,270 1/1:0,7:7:21:257,21,0 1/1:0,7:7:20:198,20,0 1/1:0,8:8:24:286,24,0 ./.:6,0:6 0/1:9,8:17:99:232,0,252 0/1:4,4:8:93:136,0,93 1/1:0,8:8:24:265,24,0 1/1:0,6:6:18:216,18,0 ./.:4,0:4 0/0:9,0:9:0:0,0,8 0/1:2,7:9:33:219,0,33 1/1:0,28:28:84:963,84,0 1/1:0,11:11:33:391,33,0 1/1:0,15:15:45:512,45,0 1/1:0,7:7:21:253,21,0 1/1:0,23:23:69:842,69,0 ./.:6,0:6 1/1:0,17:17:50:536,50,0 1/1:0,6:6:18:220,18,0 1/1:0,10:10:30:383,30,0 1/1:0,10:10:30:372,30,0 0/1:3,4:7:83:127,0,83 1/1:0,4:4:12:142,12,0 0/1:6,5:11:99:160,0,147 1/1:0,5:5:15:186,15,0 1/1:0,4:4:12:158,12,0 1/1:0,17:17:51:654,51,0 0/1:3,13:16:63:407,0,63 1/1:0,11:11:33:417,33,0 1/1:0,9:9:27:328,27,0 0/1:2,7:9:47:240,0,47 0/0:4,0:4:0:0,0,51 0/0:3,0:3:6:0,6,90 1/1:0,5:5:15:186,15,0 1/1:0,5:5:15:178,15,0 1/1:0,6:6:18:205,18,0 0/0:6,0:6:18:0,18,213 0/1:6,5:11:99:156,0,156 0/1:8,9:17:99:288,0,158 1/1:0,18:18:54:651,54,0 1/1:0,13:13:39:440,39,0 ./.:4,0:4 0/1:4,6:10:99:205,0,100 0/0:6,0:6:0:0,0,77 1/1:0,6:6:18:226,18,0 1/1:0,6:6:18:225,18,0 1/1:0,4:4:12:138,12,0 1/1:0,17:17:51:591,51,0 1/1:0,7:7:21:264,21,0 1/1:0,24:24:72:871,72,0 0/1:2,6:8:18:174,0,18 0/1:2,5:7:48:161,0,48 1/1:0,8:8:24:296,24,0 0/1:4,5:9:99:169,0,113 1/1:0,8:8:24:275,24,0 ./.:4,0:4 ./.:6,0:6 ./.:4,0:4 ./.:3,0:3 0/0:4,0:4:12:0,12,119 ./.:4,0:4 0/1:2,4:6:47:117,0,47 1/1:0,8:8:24:284,24,0 0/0:4,0:4:9:0,9,135 0/1:3,5:8:82:158,0,82 0/1:3,7:10:66:233,0,66 1/1:0,13:13:39:494,39,0 1/1:0,14:14:42:468,42,0 1/1:0,7:7:21:265,21,0 1/1:2,23:25:35:779,35,0 0/1:5,8:13:99:248,0,135 1/1:0,4:4:12:143,12,0 0/1:6,6:12:99:181,0,165 1/1:0,7:7:21:265,21,0 0/1:7,5:12:99:147,0,222 1/1:0,10:10:30:375,30,0 ./.:0,0:0 0/1:5,13:18:86:441,0,86 0/1:7,9:16:99:247,0,118 1/1:0,9:9:27:336,27,0 1/1:0,6:6:18:225,18,0 0/1:2,5:7:50:170,0,50 0/0:5,0:5:0:0,0,18 1/1:0,17:17:51:641,51,0 1/1:0,7:7:21:272,21,0 1/1:0,10:10:30:345,30,0 0/0:5,0:5:0:0,0,18 1/1:0,8:8:24:282,24,0 1/1:0,5:5:15:188,15,0 0/1:1,4:5:27:139,0,27 1/1:0,10:10:30:385,30,0 ./.:4,0:4 1 11073507 rs58761409 TCA T 6758.25 . AC=54;AF=0.563;AN=96;BaseQRankSum=0.731;ClippingRankSum=0.198;DB;DP=293;FS=0.000;InbreedingCoeff=0.3996;MLEAC=66;MLEAF=0.688;MQ=60.00;MQRankSum=0.736;QD=34.24;ReadPosRankSum=0.00;SOR=4.905 GT:AD:DP:GQ:PL ./.:0,0:0 1/1:0,4:4:12:177,12,0 0/0:4,0:4:0:0,0,41 1/1:0,4:4:12:180,12,0 1/1:0,4:4:12:180,12,0 0/1:1,8:9:18:321,0,18 0/0:1,0:1:3:0,3,36 0/0:1,0:1:3:0,3,32 1/1:0,5:5:15:224,15,0 1/1:0,6:6:18:258,18,0 ./.:0,0:0 ./.:0,0:0 ./.:0,0:0 0/0:1,0:1:3:0,3,39 ./.:1,0:1 ./.:2,0:2 ./.:1,0:1 0/1:2,4:6:64:160,0,64 0/0:2,0:2:6:0,6,82 ./.:0,0:0 1/1:0,4:4:12:180,12,0 ./.:2,0:2 ./.:2,0:2 1/1:0,9:9:27:394,27,0 0/0:2,0:2:6:0,6,66 ./.:0,0:0 ./.:1,0:1 ./.:0,0:0 ./.:0,0:0 ./.:0,0:0 ./.:1,0:1 ./.:4,0:4 ./.:2,0:2 ./.:0,0:0 ./.:1,0:1 0/0:4,0:4:0:0,0,77 1/1:0,6:6:18:269,18,0 ./.:1,0:1 0/0:3,0:3:0:0,0,34 0/0:2,0:2:6:0,6,76 0/0:2,0:2:6:0,6,69 1/1:0,4:4:12:180,12,0 ./.:0,0:0 ./.:2,0:2 0/0:6,0:6:0:0,0,148 1/1:0,5:5:15:212,15,0 0/1:1,5:6:14:200,0,14 1/1:0,6:6:18:259,18,0 1/1:0,4:4:12:180,12,0 ./.:3,0:3 ./.:0,0:0 ./.:0,0:0 ./.:2,0:2 1/1:0,4:4:12:159,12,0 ./.:1,0:1 ./.:0,0:0 1/1:0,4:4:12:180,12,0 1/1:0,8:8:24:360,24,0 ./.:4,0:4 0/0:3,0:3:0:0,0,31 ./.:4,0:4 ./.:2,0:2 ./.:1,0:1 ./.:2,0:2 ./.:1,0:1 1/1:0,3:3:9:135,9,0 1/1:0,3:3:9:129,9,0 ./.:0,0:0 ./.:2,0:2 0/0:3,0:3:0:0,0,32 ./.:3,0:3 0/0:3,0:3:9:0,9,104 0/0:7,0:7:0:0,0,7 ./.:4,0:4 1/1:0,6:6:18:269,18,0 1/1:0,6:6:18:260,18,0 1/1:0,4:4:12:180,12,0 1/1:0,9:9:27:385,27,0 0/1:1,4:5:31:155,0,31 ./.:0,0:0 0/1:2,5:7:70:204,0,70 ./.:2,0:2 0/0:2,0:2:6:0,6,76 ./.:1,0:1 ./.:0,0:0 0/1:6,4:10:99:150,0,228 0/0:8,0:8:0:0,0,130 ./.:1,0:1 ./.:0,0:0 ./.:0,0:0 0/0:4,0:4:0:0,0,73 1/1:0,4:4:12:174,12,0 1/1:0,4:4:12:174,12,0 ./.:0,0:0 ./.:0,0:0 1/1:0,15:15:45:659,45,0 ./.:0,0:0 ./.:0,0:0 ./.:1,0:1 ./.:0,0:0 1 11073982 rs61730366 T C 1321.86 . AC=2;AF=0.010;AN=198;BaseQRankSum=-1.668e+00;ClippingRankSum=-3.150e-01;DB;DP=3817;FS=0.000;InbreedingCoeff=-0.0110;MLEAC=2;MLEAF=0.010;MQ=56.06;MQRankSum=0.994;QD=9.31;ReadPosRankSum=-7.290e-01;SOR=0.685 GT:AD:DP:GQ:PL 0/0:31,0:31:81:0,81,1215 0/0:40,0:40:99:0,99,1485 0/1:60,26:86:99:643,0,1934 0/0:46,0:46:99:0,105,1620 0/0:39,0:39:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:44,0:44:99:0,102,1530 0/0:41,0:41:99:0,99,1485 0/0:38,0:38:99:0,99,1405 0/0:37,0:37:99:0,102,1530 0/0:39,0:39:99:0,99,1485 ./.:0,0:0 0/0:42,0:42:99:0,99,1485 0/0:41,0:41:99:0,102,1519 0/0:42,0:42:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:16,0:16:33:0,33,495 0/0:43,0:43:99:0,102,1530 0/0:45,0:45:99:0,99,1485 0/0:30,0:30:72:0,72,1080 0/0:42,0:42:99:0,99,1485 0/0:35,0:35:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:34,0:34:87:0,87,1305 0/0:32,0:32:72:0,72,1080 0/0:43,0:43:99:0,99,1466 0/0:31,0:31:72:0,72,1080 0/0:40,0:40:99:0,99,1485 0/0:33,0:33:75:0,75,1125 0/0:33,0:33:72:0,72,1080 0/0:39,0:39:99:0,99,1485 0/0:42,0:42:99:0,102,1530 0/0:42,0:42:99:0,99,1485 0/0:48,0:48:99:0,99,1485 0/0:34,0:34:90:0,90,1350 0/0:40,0:40:99:0,100,1530 0/0:32,0:32:81:0,81,1215 0/0:23,0:23:60:0,60,900 0/0:37,0:37:99:0,99,1485 0/0:36,0:36:93:0,93,1395 0/0:40,0:40:96:0,96,1440 0/0:40,0:40:99:0,99,1485 0/0:43,0:43:99:0,102,1530 0/0:42,0:42:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:37,0:37:84:0,84,1260 0/0:40,0:40:99:0,99,1485 0/0:40,0:40:93:0,93,1395 0/0:45,0:45:99:0,102,1530 0/0:42,0:42:99:0,111,1564 0/0:4,0:4:9:0,9,135 0/0:42,0:42:99:0,99,1485 0/0:40,0:40:99:0,102,1416 0/0:31,0:31:81:0,81,1215 0/0:41,0:41:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/1:30,26:56:99:738,0,960 0/0:44,0:44:99:0,99,1485 0/0:38,0:38:81:0,81,1215 0/0:39,0:39:99:0,105,1487 0/0:44,0:44:99:0,99,1485 0/0:42,0:42:99:0,108,1620 0/0:42,0:42:99:0,99,1485 0/0:41,0:41:99:0,102,1530 0/0:35,0:35:81:0,81,1215 0/0:42,0:42:99:0,99,1485 0/0:32,0:32:75:0,75,1125 0/0:43,0:43:99:0,99,1485 0/0:39,0:39:99:0,102,1530 0/0:42,0:42:99:0,99,1485 0/0:37,0:37:99:0,99,1309 0/0:40,0:40:99:0,102,1530 0/0:37,0:37:99:0,102,1376 0/0:40,0:40:99:0,99,1485 0/0:42,0:42:99:0,102,1530 0/0:36,0:36:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:42,0:42:99:0,102,1530 0/0:8,0:8:24:0,24,314 0/0:38,0:38:99:0,102,1526 0/0:40,0:40:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:35,0:35:87:0,87,1305 0/0:22,0:22:57:0,57,855 0/0:40,0:40:99:0,99,1485 0/0:38,0:38:99:0,102,1530 0/0:36,0:36:99:0,99,1485 0/0:6,0:6:15:0,15,225 0/0:41,0:41:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:37,0:37:99:0,102,1401 0/0:45,0:45:99:0,102,1530 0/0:36,0:36:72:0,72,1080 1 11074250 rs3765895 A G 24352.87 . AC=112;AF=0.727;AN=154;BaseQRankSum=1.37;ClippingRankSum=0.116;DB;DP=978;FS=0.000;InbreedingCoeff=0.2504;MLEAC=121;MLEAF=0.786;MQ=60.00;MQRankSum=-2.950e-01;QD=31.34;ReadPosRankSum=0.135;SOR=4.033 GT:AD:DP:GQ:PL 1/1:0,6:6:18:234,18,0 1/1:0,18:18:54:714,54,0 0/0:14,0:14:0:0,0,45 1/1:0,8:8:24:299,24,0 1/1:0,8:8:24:285,24,0 1/1:0,18:18:54:676,54,0 ./.:5,0:5 0/0:6,0:6:12:0,12,180 1/1:0,10:10:30:384,30,0 1/1:0,13:13:39:474,39,0 ./.:3,0:3 0/0:7,0:7:0:0,0,185 ./.:1,0:1 ./.:11,0:11 ./.:3,0:3 1/1:0,11:11:33:397,33,0 1/1:0,9:9:27:354,27,0 0/0:10,0:10:0:0,0,34 0/0:18,0:18:0:0,0,27 ./.:2,0:2 1/1:0,11:11:33:447,33,0 1/1:1,14:15:6:466,6,0 1/1:0,5:5:15:180,15,0 1/1:0,24:24:72:836,72,0 ./.:5,0:5 ./.:3,0:3 ./.:3,0:3 ./.:2,0:2 ./.:3,0:3 0/1:5,7:12:99:199,0,140 1/1:0,4:4:12:156,12,0 ./.:4,0:4 1/1:0,12:12:36:417,36,0 1/1:0,6:6:18:233,18,0 1/1:0,5:5:15:192,15,0 0/1:8,11:19:99:326,0,217 1/1:0,10:10:30:391,30,0 1/1:0,6:6:18:230,18,0 0/1:3,4:7:84:134,0,84 0/1:6,6:12:99:194,0,170 0/0:3,0:3:9:0,9,98 ./.:3,0:3 1/1:0,10:10:30:401,30,0 1/1:0,7:7:21:270,21,0 0/0:6,0:6:0:0,0,143 0/1:5,7:12:99:197,0,139 0/1:4,7:11:99:243,0,112 0/1:2,12:14:32:370,0,32 1/1:0,9:9:27:354,27,0 1/1:0,7:7:21:261,21,0 0/0:7,0:7:0:0,0,7 0/1:5,4:9:99:123,0,157 1/1:0,6:6:18:195,18,0 1/1:0,4:4:12:164,12,0 ./.:3,0:3 ./.:0,0:0 1/1:0,14:14:42:474,42,0 1/1:1,25:26:41:867,41,0 ./.:0,0:0 0/1:7,5:12:99:163,0,224 1/1:0,16:16:48:592,48,0 ./.:5,0:5 1/1:0,7:7:21:268,21,0 1/1:0,6:6:18:232,18,0 0/0:7,0:7:0:0,0,30 1/1:0,7:7:21:271,21,0 1/1:0,9:9:27:350,27,0 0/0:11,0:11:27:0,27,405 1/1:0,11:11:33:384,33,0 0/1:5,7:12:99:232,0,141 ./.:8,0:8 0/0:6,0:6:9:0,9,135 0/1:4,8:12:99:276,0,110 0/1:6,7:13:99:220,0,178 1/1:0,21:21:63:787,63,0 1/1:0,15:15:45:557,45,0 1/1:0,13:13:39:497,39,0 1/1:0,41:41:99:1494,123,0 0/1:9,7:16:99:204,0,269 1/1:0,9:9:27:345,27,0 0/1:6,9:15:99:274,0,135 1/1:0,15:15:45:578,45,0 ./.:7,0:7 1/1:0,10:10:30:379,30,0 ./.:0,0:0 0/1:13,19:32:99:615,0,332 0/0:12,0:12:0:0,0,53 1/1:0,10:10:30:324,30,0 ./.:1,0:1 ./.:7,0:7 0/0:11,0:11:0:0,0,100 1/1:0,22:22:65:769,65,0 1/1:0,5:5:15:193,15,0 ./.:0,0:0 1/1:0,13:13:39:481,39,0 1/1:0,27:27:81:993,81,0 1/1:0,6:6:18:233,18,0 1/1:0,11:11:33:424,33,0 1/1:0,5:5:15:197,15,0 0/1:2,6:8:34:152,0,34 1 11077174 rs112742746 C T 482.84 . AC=1;AF=5.000e-03;AN=200;BaseQRankSum=3.67;ClippingRankSum=1.66;DB;DP=2012;FS=0.000;InbreedingCoeff=-0.0106;MLEAC=1;MLEAF=5.000e-03;MQ=58.49;MQRankSum=0.350;QD=13.05;ReadPosRankSum=0.290;SOR=0.551 GT:AD:DP:GQ:PL 0/0:25,0:25:57:0,57,855 0/0:26,0:26:60:0,60,900 0/0:32,0:32:56:0,56,981 0/0:25,0:25:63:0,63,945 0/0:27,0:27:60:0,60,900 0/0:32,0:32:81:0,81,1215 0/0:28,0:28:66:0,66,990 0/0:12,0:12:27:0,27,405 0/0:13,0:13:36:0,36,540 0/0:41,0:41:99:0,99,1405 0/0:24,0:24:54:0,54,810 0/0:9,0:9:21:0,21,315 0/0:2,0:2:6:0,6,71 0/0:20,0:20:48:0,48,720 0/0:22,0:22:54:0,54,810 0/0:16,0:16:23:0,23,494 0/0:24,0:24:54:0,54,810 0/0:16,0:16:42:0,42,630 0/0:27,0:27:60:0,60,900 0/0:10,0:10:15:0,15,225 0/0:24,0:24:34:0,34,771 0/0:29,0:29:60:0,60,900 0/0:8,0:8:24:0,24,300 0/0:36,0:36:99:0,99,1485 0/0:9,0:9:16:0,16,274 0/0:18,0:18:27:0,27,556 0/0:14,0:14:36:0,36,540 0/0:28,0:28:72:0,72,1080 0/0:12,0:12:30:0,30,450 0/0:16,0:16:39:0,39,585 0/0:20,0:20:48:0,48,720 0/0:13,0:13:36:0,36,540 0/0:21,0:21:48:0,48,720 0/0:11,0:11:33:0,33,390 0/0:33,0:33:81:0,81,1215 0/0:41,0:41:99:0,99,1485 0/0:14,0:14:36:0,36,540 0/0:22,0:22:51:0,51,715 0/0:15,0:15:27:0,27,405 0/0:15,0:15:27:0,27,405 0/0:5,0:5:15:0,15,200 0/0:14,0:14:42:0,42,498 0/0:13,0:13:27:0,27,405 0/0:9,0:9:24:0,24,360 0/0:15,0:15:33:0,33,495 0/0:25,0:25:57:0,57,855 0/0:31,0:31:78:0,78,1170 0/0:38,0:38:90:0,90,1350 0/0:21,0:21:39:0,39,585 0/0:11,0:11:24:0,24,360 0/0:17,0:17:39:0,39,585 0/0:16,0:16:36:0,36,540 0/0:17,0:17:45:0,45,675 0/0:11,0:11:30:0,30,450 0/0:12,0:12:30:0,30,450 0/0:2,0:2:3:0,3,45 0/0:24,0:24:63:0,63,945 0/0:42,0:42:99:0,99,1485 0/0:14,0:14:36:0,36,540 0/0:12,0:12:27:0,27,405 0/0:32,0:32:81:0,81,1215 0/0:12,0:12:30:0,30,450 0/0:15,0:15:45:0,45,544 0/0:12,0:12:36:0,36,369 0/0:18,0:18:36:0,36,540 0/0:22,0:22:57:0,57,855 0/0:8,0:8:21:0,21,315 0/0:21,0:21:54:0,54,810 0/0:15,0:15:33:0,33,495 0/0:7,0:7:9:0,9,135 0/0:18,0:18:45:0,45,675 0/0:19,0:19:36:0,36,540 0/0:22,0:22:54:0,54,810 0/1:20,17:37:99:525,0,463 0/0:25,0:25:54:0,54,810 0/0:31,0:31:75:0,75,1125 0/0:19,0:19:39:0,39,585 0/0:47,0:47:99:0,102,1425 0/0:30,0:30:75:0,75,1125 0/0:13,0:13:30:0,30,450 0/0:23,0:23:60:0,60,900 0/0:27,0:27:72:0,72,1080 0/0:21,0:21:54:0,54,810 0/0:16,0:16:33:0,33,495 0/0:4,0:4:12:0,12,143 0/0:41,0:41:99:0,108,1620 0/0:39,0:39:90:0,90,1350 0/0:30,0:30:75:0,75,1125 0/0:7,0:7:21:0,21,242 0/0:7,0:7:18:0,18,270 0/0:23,0:23:57:0,57,855 0/0:41,0:41:99:0,102,1530 0/0:16,0:16:33:0,33,495 0/0:2,0:2:6:0,6,73 0/0:27,0:27:60:0,60,900 0/0:16,0:16:30:0,30,450 0/0:12,0:12:36:0,36,427 0/0:6,0:6:15:0,15,225 0/0:38,0:38:99:0,99,1485 0/0:14,0:14:36:0,36,540 1 11078630 . A G 429.87 . AC=1;AF=5.102e-03;AN=196;BaseQRankSum=1.53;ClippingRankSum=-4.850e-01;DP=2534;FS=0.000;InbreedingCoeff=-0.0072;MLEAC=1;MLEAF=5.102e-03;MQ=60.00;MQRankSum=-8.580e-01;QD=20.47;ReadPosRankSum=-3.360e-01;SOR=1.508 GT:AD:DP:GQ:PL 0/0:24,0:24:42:0,42,630 0/0:36,0:36:72:0,72,1080 0/0:40,0:40:99:0,99,1485 0/0:30,0:30:81:0,81,1215 0/0:32,0:32:90:0,90,1350 0/0:37,0:37:99:0,99,1485 0/0:13,0:13:33:0,33,495 0/0:24,0:24:60:0,60,900 0/0:25,0:25:60:0,60,900 0/0:39,0:39:99:0,99,1485 0/0:23,0:23:51:0,51,765 0/0:8,0:8:24:0,24,301 ./.:0,0:0 0/0:24,0:24:51:0,51,765 0/0:22,0:22:51:0,51,765 0/0:29,0:29:69:0,69,1035 0/0:24,0:24:61:0,61,866 0/0:38,0:38:90:0,90,1350 0/0:37,0:37:93:0,93,1395 0/0:12,0:12:30:0,30,450 0/0:26,0:26:51:0,51,765 0/0:35,0:35:90:0,90,1350 0/0:10,0:10:24:0,24,360 0/0:45,0:45:99:0,120,1800 0/0:17,0:17:39:0,39,585 0/0:5,0:5:15:0,15,149 0/0:16,0:16:30:0,30,450 0/0:24,0:24:63:0,63,945 0/0:22,0:22:60:0,60,900 0/0:30,0:30:81:0,81,1215 0/0:13,0:13:27:0,27,405 0/0:29,0:29:72:0,72,1080 0/0:24,0:24:48:0,48,720 0/0:17,0:17:42:0,42,630 0/0:41,0:41:99:0,99,1485 0/0:34,0:34:99:0,99,1485 0/0:24,0:24:57:0,57,855 0/0:17,0:17:51:0,51,632 0/0:22,0:22:57:0,57,855 0/0:21,0:21:42:0,42,630 0/0:16,0:16:36:0,36,540 0/0:16,0:16:48:0,48,593 0/1:7,14:21:99:472,0,191 0/0:10,0:10:21:0,21,315 0/0:10,0:10:24:0,24,360 0/0:41,0:41:90:0,90,1350 0/0:32,0:32:72:0,72,1080 0/0:36,0:36:99:0,99,1485 0/0:28,0:28:60:0,60,900 0/0:16,0:16:42:0,42,630 0/0:25,0:25:63:0,63,945 0/0:21,0:21:48:0,48,720 0/0:19,0:19:19:0,19,622 0/0:21,0:21:60:0,60,900 0/0:18,0:18:43:0,43,661 0/0:1,0:1:3:0,3,30 0/0:36,0:36:99:0,99,1485 0/0:36,0:36:99:0,99,1485 0/0:16,0:16:36:0,36,540 0/0:20,0:20:54:0,54,810 0/0:38,0:38:99:0,99,1485 0/0:27,0:27:63:0,63,945 0/0:24,0:24:54:0,54,810 0/0:20,0:20:42:0,42,630 0/0:19,0:19:42:0,42,630 0/0:27,0:27:60:0,60,900 0/0:14,0:14:10:0,10,448 0/0:24,0:24:60:0,60,900 0/0:18,0:18:39:0,39,585 0/0:23,0:23:60:0,60,900 0/0:36,0:36:96:0,96,1440 0/0:18,0:18:54:0,54,666 0/0:33,0:33:81:0,81,1215 0/0:39,0:39:99:0,99,1485 0/0:29,0:29:63:0,63,945 0/0:37,0:37:99:0,99,1485 0/0:45,0:45:99:0,102,1530 0/0:42,0:42:99:0,120,1676 0/0:39,0:39:99:0,99,1485 0/0:23,0:23:63:0,63,945 0/0:43,0:43:99:0,102,1530 0/0:41,0:41:99:0,99,1485 0/0:31,0:31:81:0,81,1215 0/0:21,0:21:45:0,45,675 0/0:5,0:5:12:0,12,180 0/0:41,0:41:99:0,112,1467 0/0:39,0:39:99:0,99,1485 0/0:40,0:40:87:0,87,1305 0/0:21,0:21:48:0,48,720 0/0:7,0:7:18:0,18,270 0/0:31,0:31:60:0,60,900 0/0:36,0:36:99:0,99,1339 0/0:16,0:16:39:0,39,585 ./.:0,0:0 0/0:23,0:23:51:0,51,765 0/0:26,0:26:72:0,72,1080 0/0:27,0:27:57:0,57,855 0/0:14,0:14:36:0,36,540 0/0:40,0:40:99:0,100,1530 0/0:29,0:29:81:0,81,1215 1 11079077 rs2273348 A G 86854.76 . AC=152;AF=0.784;AN=194;BaseQRankSum=1.40;ClippingRankSum=0.290;DB;DP=3069;FS=0.000;InbreedingCoeff=-0.0337;MLEAC=152;MLEAF=0.784;MQ=59.32;MQRankSum=-2.950e-01;QD=29.31;ReadPosRankSum=0.044;SOR=0.590 GT:AD:DP:GQ:PL 1/1:0,24:24:72:935,72,0 1/1:0,42:42:99:1602,126,0 0/1:20,24:44:99:750,0,537 1/1:0,35:35:99:1319,104,0 1/1:0,22:22:66:871,66,0 1/1:0,61:61:99:2205,183,0 0/1:7,11:18:99:368,0,206 0/0:21,0:21:48:0,48,720 1/1:0,37:37:99:1429,111,0 1/1:2,38:40:51:1267,51,0 1/1:0,20:20:60:791,60,0 0/1:11,12:23:99:362,0,335 ./.:1,0:1 0/1:15,9:24:99:277,0,497 1/1:0,13:13:38:422,38,0 1/1:0,29:29:87:1110,87,0 1/1:0,25:25:75:987,75,0 0/1:16,21:37:99:669,0,465 0/1:23,15:38:99:433,0,752 1/1:0,12:12:36:415,36,0 1/1:0,36:36:99:1384,108,0 1/1:2,44:46:65:1628,65,0 1/1:0,20:20:60:765,60,0 1/1:0,63:63:99:2432,189,0 0/1:12,6:18:99:185,0,376 1/1:0,15:15:45:524,45,0 1/1:0,34:34:99:1289,102,0 1/1:1,19:20:23:697,23,0 1/1:0,13:13:39:490,39,0 0/1:16,9:25:99:270,0,542 1/1:0,18:18:54:666,54,0 0/1:6,11:17:99:376,0,160 1/1:0,23:23:68:817,68,0 1/1:0,16:16:48:593,48,0 1/1:1,29:30:56:1095,56,0 0/1:27,33:60:99:1033,0,771 1/1:0,29:29:87:1152,87,0 1/1:0,21:21:63:800,63,0 0/1:13,11:24:99:358,0,423 0/1:14,13:27:99:397,0,451 0/0:16,0:16:36:0,36,540 1/1:0,21:21:63:787,63,0 1/1:0,24:24:72:915,72,0 1/1:0,14:14:42:536,42,0 0/1:12,11:23:99:358,0,371 0/1:21,25:46:99:780,0,658 0/1:24,18:42:99:574,0,759 1/1:1,57:58:99:2051,138,0 1/1:0,26:26:78:991,78,0 1/1:0,14:14:42:542,42,0 0/1:16,14:30:99:364,0,514 0/1:11,13:24:99:444,0,354 1/1:0,33:33:99:1219,99,0 1/1:0,24:24:72:937,72,0 1/1:0,11:11:33:424,33,0 ./.:1,0:1 1/1:0,48:48:99:1703,143,0 1/1:1,74:75:99:2766,185,0 0/1:3,11:14:70:396,0,70 0/1:14,9:23:99:247,0,473 1/1:0,37:37:99:1397,111,0 0/1:17,18:35:99:599,0,517 1/1:0,22:22:66:849,66,0 0/1:17,10:27:99:300,0,575 0/1:7,17:24:99:562,0,196 1/1:0,28:28:83:1030,83,0 1/1:0,31:31:93:1190,93,0 0/0:29,0:29:57:0,57,855 1/1:0,18:18:54:638,54,0 0/1:7,18:25:99:561,0,201 1/1:0,30:30:90:1178,90,0 0/0:11,0:11:21:0,21,315 0/1:13,10:23:99:323,0,413 1/1:0,56:56:99:2039,168,0 1/1:1,40:41:83:1404,83,0 1/1:3,45:48:33:1564,33,0 1/1:0,41:41:99:1614,123,0 1/1:0,102:102:99:3709,306,0 0/1:16,20:36:99:663,0,490 1/1:0,29:29:87:1173,87,0 0/1:24,20:44:99:651,0,744 1/1:0,51:51:99:1914,153,0 0/1:12,22:34:99:725,0,359 1/1:0,18:18:54:680,54,0 1/1:0,13:13:39:487,39,0 0/1:52,49:101:99:1428,0,1630 0/1:20,16:36:99:451,0,572 1/1:1,35:36:70:1189,70,0 1/1:0,18:18:54:686,54,0 0/1:9,10:19:99:332,0,289 0/1:16,9:25:99:271,0,499 1/1:0,57:57:99:2101,172,0 1/1:0,24:24:72:938,72,0 ./.:1,0:1 0/1:13,21:34:99:721,0,367 1/1:0,50:50:99:1806,150,0 1/1:0,29:29:87:1126,87,0 0/1:10,8:18:99:263,0,302 1/1:0,30:30:90:1122,90,0 0/1:12,12:24:99:322,0,288 1 11080274 . C G 815.07 . AC=2;AF=0.010;AN=196;BaseQRankSum=2.54;ClippingRankSum=-3.880e-01;DP=2521;FS=0.000;InbreedingCoeff=-0.0142;MLEAC=2;MLEAF=0.010;MQ=60.00;MQRankSum=0.120;QD=12.94;ReadPosRankSum=0.935;SOR=0.551 GT:AD:DP:GQ:PL 0/0:16,0:16:48:0,48,579 0/0:37,0:37:99:0,99,1485 0/0:37,0:37:78:0,78,1170 0/0:19,0:19:54:0,54,810 0/0:29,0:29:81:0,81,1215 0/0:37,0:37:99:0,99,1485 0/0:24,0:24:60:0,60,900 0/0:25,0:25:60:0,60,900 0/0:16,0:16:42:0,42,630 0/0:43,0:43:99:0,101,1575 0/0:15,0:15:33:0,33,516 0/0:15,0:15:39:0,39,585 0/0:1,0:1:3:0,3,31 0/0:28,0:28:72:0,72,1080 0/0:24,0:24:60:0,60,900 0/0:30,0:30:90:0,90,1091 0/0:10,0:10:30:0,30,375 0/0:36,0:36:84:0,84,1260 0/0:36,0:36:84:0,84,1260 0/0:18,0:18:51:0,51,765 0/0:27,0:27:72:0,72,1080 0/0:45,0:45:99:0,102,1530 0/0:22,0:22:57:0,57,855 0/0:37,0:37:99:0,99,1485 0/0:20,0:20:36:0,36,540 0/0:14,0:14:42:0,42,502 0/0:24,0:24:60:0,60,900 0/0:17,0:17:45:0,45,675 0/0:11,0:11:24:0,24,360 0/0:29,0:29:57:0,57,855 0/0:23,0:23:39:0,39,757 0/0:14,0:14:4:0,4,447 0/0:25,0:25:72:0,72,1080 0/0:11,0:11:33:0,33,405 0/0:34,0:34:84:0,84,1260 0/0:45,0:45:99:0,105,1566 0/0:24,0:24:57:0,57,855 0/0:20,0:20:45:0,45,675 0/0:22,0:22:63:0,63,945 0/0:16,0:16:45:0,45,675 0/1:9,13:22:99:413,0,235 0/0:9,0:9:27:0,27,332 0/0:17,0:17:48:0,48,720 0/0:16,0:16:39:0,39,585 0/0:18,0:18:51:0,51,765 0/0:30,0:30:72:0,72,1080 0/0:30,0:30:72:0,72,1080 0/0:36,0:36:99:0,99,1376 0/0:33,0:33:81:0,81,1215 0/0:10,0:10:27:0,27,405 0/0:22,0:22:51:0,51,765 0/0:21,0:21:45:0,45,675 0/0:33,0:33:81:0,81,1215 0/0:16,0:16:45:0,45,675 0/0:5,0:5:12:0,12,180 ./.:0,0:0 0/0:38,0:38:99:0,102,1438 0/0:38,0:38:99:0,102,1497 0/0:22,0:22:48:0,48,757 0/0:28,0:28:72:0,72,1080 0/0:26,0:26:63:0,63,945 0/0:24,0:24:63:0,63,945 0/0:32,0:32:90:0,90,1350 0/0:22,0:22:60:0,60,900 0/0:15,0:15:45:0,45,585 0/0:19,0:19:45:0,45,675 0/0:25,0:25:63:0,63,945 0/0:28,0:28:60:0,60,900 0/0:18,0:18:48:0,48,720 0/0:25,0:25:60:0,60,900 0/0:34,0:34:99:0,99,1480 0/0:39,0:39:99:0,99,1485 0/0:36,0:36:99:0,99,1485 0/0:38,0:38:90:0,90,1350 0/0:38,0:38:99:0,99,1485 0/0:39,0:39:99:0,105,1465 0/0:42,0:42:93:0,93,1395 0/0:34,0:34:99:0,102,1100 0/0:48,0:48:99:0,105,1575 0/0:25,0:25:60:0,60,900 0/0:28,0:28:60:0,60,900 0/0:36,0:36:90:0,90,1314 0/0:28,0:28:72:0,72,1080 0/0:23,0:23:60:0,60,900 0/0:4,0:4:9:0,9,135 0/0:40,0:40:99:0,102,1530 0/1:25,16:41:99:461,0,834 0/0:37,0:37:99:0,99,1390 0/0:19,0:19:39:0,39,585 0/0:18,0:18:39:0,39,585 0/0:24,0:24:60:0,60,900 0/0:33,0:33:99:0,99,1247 0/0:21,0:21:60:0,60,900 ./.:0,0:0 0/0:17,0:17:45:0,45,675 0/0:38,0:38:99:0,99,1485 0/0:20,0:20:48:0,48,720 0/0:10,0:10:21:0,21,315 0/0:27,0:27:72:0,72,1080 0/0:30,0:30:63:0,63,916 1 11080723 rs143130606 T TG 36450.17 . AC=129;AF=0.733;AN=176;BaseQRankSum=0.143;ClippingRankSum=-2.740e-01;DB;DP=1641;FS=0.000;InbreedingCoeff=0.2528;MLEAC=139;MLEAF=0.790;MQ=39.59;MQRankSum=-2.285e+00;QD=29.59;ReadPosRankSum=0.371;SOR=3.641 GT:AD:DP:GQ:PL 1/1:0,16:16:48:570,48,0 1/1:0,26:26:81:948,81,0 0/1:6,15:21:99:529,0,145 1/1:0,22:22:66:783,66,0 1/1:0,24:24:72:847,72,0 1/1:0,24:24:75:869,75,0 0/1:11,8:19:99:228,0,332 0/0:14,0:14:39:0,39,585 1/1:0,18:18:54:634,54,0 1/1:0,25:25:78:906,78,0 ./.:12,0:12 ./.:7,0:7 ./.:0,0:0 0/1:6,5:11:99:145,0,170 ./.:13,0:13 1/1:0,9:9:27:321,27,0 1/1:0,14:14:42:499,42,0 0/0:24,0:24:0:0,0,418 0/1:8,9:17:99:264,0,224 1/1:0,20:20:60:703,60,0 1/1:0,20:20:63:732,63,0 0/1:3,30:33:2:1012,0,2 1/1:0,7:7:21:249,21,0 1/1:0,31:31:96:1116,96,0 0/0:10,0:10:0:0,0,218 1/1:0,25:25:78:906,78,0 1/1:0,12:12:36:428,36,0 1/1:0,11:11:33:385,33,0 ./.:14,0:14 0/1:6,4:10:99:112,0,184 1/1:0,18:18:54:621,54,0 0/1:4,8:12:99:249,0,102 1/1:0,8:8:24:279,24,0 1/1:0,10:10:30:353,30,0 1/1:0,21:21:63:739,63,0 0/1:12,10:22:99:286,0,350 1/1:0,8:8:27:317,27,0 1/1:0,5:5:15:178,15,0 0/0:6,0:6:0:0,0,73 0/1:6,8:14:99:243,0,172 0/0:13,0:13:18:0,18,270 1/1:0,8:8:24:281,24,0 1/1:0,7:7:21:249,21,0 ./.:10,0:10 0/0:18,0:18:0:0,0,190 0/1:12,9:21:99:281,0,356 0/1:10,9:19:99:259,0,297 1/1:0,20:20:63:739,63,0 1/1:0,12:12:36:420,36,0 1/1:0,10:10:33:388,33,0 0/0:14,0:14:0:0,0,200 0/1:8,7:15:99:200,0,235 ./.:13,0:13 1/1:0,17:17:51:602,51,0 1/1:0,13:13:39:463,39,0 ./.:0,0:0 1/1:0,21:21:66:780,66,0 1/1:1,17:18:18:570,18,0 0/0:8,0:8:0:0,0,146 0/0:8,0:8:0:0,0,148 1/1:1,18:19:25:626,25,0 1/1:0,15:15:45:534,45,0 1/1:0,10:10:30:353,30,0 1/1:0,11:11:33:388,33,0 0/0:10,0:10:0:0,0,223 1/1:0,18:18:54:629,54,0 1/1:0,12:12:36:427,36,0 0/0:20,0:20:45:0,45,675 ./.:8,0:8 0/0:15,0:15:0:0,0,180 1/1:0,12:12:36:423,36,0 0/0:17,0:17:39:0,39,585 0/1:7,8:15:99:240,0,201 1/1:1,29:30:56:991,56,0 1/1:0,20:20:60:712,60,0 1/1:0,24:24:72:852,72,0 1/1:0,11:11:33:392,33,0 1/1:0,32:32:99:1151,99,0 0/1:7,9:16:99:273,0,200 1/1:0,13:13:42:495,42,0 0/1:12,7:19:99:184,0,371 1/1:0,14:14:42:494,42,0 0/1:6,14:20:99:431,0,147 1/1:0,7:7:21:249,21,0 1/1:0,4:4:12:143,12,0 0/1:33,19:52:99:542,0,1007 0/1:9,11:20:99:323,0,259 1/1:1,18:19:21:602,21,0 1/1:0,7:7:21:249,21,0 0/1:3,6:9:80:187,0,80 ./.:16,0:16 1/1:0,25:25:78:919,78,0 1/1:0,17:17:51:599,51,0 ./.:0,0:0 1/1:0,10:10:30:352,30,0 1/1:0,14:14:42:499,42,0 1/1:0,7:7:21:245,21,0 ./.:14,0:14 1/1:0,16:16:48:570,48,0 0/0:5,0:5:0:0,0,32 1 11080725 . GAGGCC G 86.13 . AC=1;AF=5.155e-03;AN=194;BaseQRankSum=0.731;ClippingRankSum=-7.310e-01;DP=1741;FS=0.000;InbreedingCoeff=-0.0059;MLEAC=1;MLEAF=5.155e-03;MQ=45.16;MQRankSum=0.731;QD=17.23;SOR=1.981 GT:AD:DP:GQ:PL 0/0:20,0:20:30:0,30,450 0/0:33,0:33:51:0,51,765 0/0:32,0:32:51:0,51,765 0/0:23,0:23:36:0,36,540 0/0:25,0:25:42:0,42,630 0/0:28,0:28:51:0,51,765 0/0:20,0:20:45:0,45,675 0/0:14,0:14:39:0,39,585 0/0:20,0:20:36:0,36,540 0/0:33,0:33:60:0,60,900 0/0:12,0:12:12:0,12,180 0/0:6,0:6:6:0,6,90 ./.:0,0:0 0/0:14,0:14:21:0,21,488 0/1:1,4:5:34:128,0,34 0/0:10,0:10:6:0,6,90 0/0:14,0:14:27:0,27,405 0/0:22,0:22:51:0,51,765 0/0:18,0:18:39:0,39,585 0/0:25,0:25:63:0,63,945 0/0:26,0:26:45:0,45,675 0/0:37,0:37:66:0,66,990 0/0:8,0:8:9:0,9,135 0/0:38,0:38:78:0,78,1170 0/0:12,0:12:30:0,30,450 0/0:31,0:31:69:0,69,1035 0/0:13,0:13:33:0,33,495 0/0:13,0:13:18:0,18,270 0/0:13,0:13:27:0,27,405 0/0:10,0:10:15:0,15,225 0/0:18,0:18:30:0,30,450 0/0:13,0:13:21:0,21,315 0/0:11,0:11:18:0,18,270 0/0:13,0:13:18:0,18,270 0/0:23,0:23:42:0,42,630 0/0:26,0:26:45:0,45,675 0/0:11,0:11:18:0,18,270 0/0:5,0:5:0:0,0,14 0/0:5,0:5:9:0,9,135 0/0:15,0:15:27:0,27,405 0/0:13,0:13:18:0,18,270 0/0:8,0:8:9:0,9,135 0/0:6,0:6:12:0,12,180 0/0:9,0:9:12:0,12,180 0/0:17,0:17:27:0,27,405 0/0:28,0:28:54:0,54,810 0/0:27,0:27:57:0,57,855 0/0:33,0:33:63:0,63,945 0/0:13,0:13:21:0,21,315 0/0:11,0:11:18:0,18,270 0/0:15,0:15:30:0,30,450 0/0:15,0:15:33:0,33,495 0/0:14,0:14:12:0,12,180 0/0:18,0:18:33:0,33,495 0/0:15,0:15:24:0,24,360 ./.:0,0:0 0/0:24,0:24:36:0,36,540 0/0:23,0:23:45:0,45,675 0/0:8,0:8:15:0,15,225 0/0:8,0:8:18:0,18,270 0/0:25,0:25:54:0,54,810 0/0:17,0:17:33:0,33,495 0/0:12,0:12:12:0,12,180 0/0:13,0:13:24:0,24,360 0/0:10,0:10:15:0,15,225 0/0:21,0:21:48:0,48,720 0/0:13,0:13:24:0,24,360 0/0:20,0:20:39:0,39,585 0/0:7,0:7:9:0,9,135 0/0:15,0:15:18:0,18,270 0/0:15,0:15:18:0,18,270 0/0:17,0:17:30:0,30,450 0/0:18,0:18:33:0,33,495 0/0:32,0:32:54:0,54,810 0/0:20,0:20:21:0,21,315 0/0:27,0:27:48:0,48,720 0/0:11,0:11:21:0,21,315 0/0:45,0:45:72:0,72,1080 0/0:20,0:20:33:0,33,495 0/0:18,0:18:24:0,24,360 0/0:20,0:20:45:0,45,675 0/0:18,0:18:27:0,27,405 0/0:22,0:22:36:0,36,540 0/0:9,0:9:24:0,24,360 0/0:5,0:5:12:0,12,180 0/0:71,0:71:99:0,108,1620 0/0:23,0:23:36:0,36,540 0/0:20,0:20:21:0,21,315 0/0:8,0:8:18:0,18,270 0/0:9,0:9:21:0,21,315 0/0:16,0:16:24:0,24,360 0/0:32,0:32:57:0,57,855 0/0:18,0:18:14:0,14,594 ./.:0,0:0 0/0:11,0:11:12:0,12,180 0/0:18,0:18:27:0,27,405 0/0:9,0:9:18:0,18,270 0/0:15,0:15:24:0,24,360 0/0:18,0:18:27:0,27,405 0/0:2,0:2:6:0,6,61 1 11081880 rs1474891 G T 736.51 . AC=10;AF=0.238;AN=42;DB;DP=125;FS=0.000;InbreedingCoeff=0.3665;MLEAC=17;MLEAF=0.405;MQ=60.00;QD=32.02;SOR=6.358 GT:AD:DP:GQ:PL ./.:1,0:1 ./.:0,0:0 ./.:2,0:2 ./.:2,0:2 ./.:0,0:0 ./.:1,0:1 0/0:4,0:4:0:0,0,58 0/0:1,0:1:3:0,3,35 ./.:2,0:2 ./.:0,0:0 ./.:1,0:1 ./.:0,0:0 ./.:0,0:0 ./.:0,0:0 ./.:2,0:2 ./.:2,0:2 ./.:1,0:1 0/0:2,0:2:0:0,0,4 ./.:3,0:3 ./.:0,0:0 ./.:0,0:0 ./.:3,0:3 ./.:0,0:0 ./.:3,0:3 0/0:1,0:1:3:0,3,35 ./.:1,0:1 ./.:0,0:0 ./.:0,0:0 ./.:0,0:0 ./.:0,0:0 ./.:1,0:1 ./.:1,0:1 ./.:0,0:0 ./.:1,0:1 ./.:3,0:3 0/0:4,0:4:0:0,0,72 ./.:0,0:0 ./.:2,0:2 0/0:1,0:1:3:0,3,36 0/0:1,0:1:3:0,3,31 ./.:0,0:0 ./.:1,0:1 ./.:1,0:1 ./.:3,0:3 0/0:3,0:3:0:0,0,37 ./.:2,0:2 ./.:0,0:0 ./.:2,0:2 ./.:1,0:1 ./.:1,0:1 ./.:2,0:2 ./.:0,0:0 ./.:2,0:2 ./.:1,0:1 ./.:0,0:0 ./.:0,0:0 ./.:3,0:3 ./.:2,0:2 ./.:0,0:0 0/0:2,0:2:0:0,0,6 ./.:3,0:3 0/0:1,0:1:3:0,3,34 ./.:1,0:1 ./.:0,0:0 ./.:0,0:0 ./.:1,0:1 ./.:0,0:0 0/0:1,0:1:3:0,3,28 ./.:0,0:0 ./.:0,0:0 1/1:0,4:4:12:150,12,0 0/0:1,0:1:3:0,3,38 ./.:0,0:0 0/0:1,0:1:3:0,3,32 1/1:0,4:4:12:136,12,0 ./.:0,0:0 ./.:1,0:1 1/1:0,7:7:21:234,21,0 ./.:0,0:0 ./.:1,0:1 1/1:0,4:4:12:152,12,0 ./.:1,0:1 0/0:2,0:2:0:0,0,5 ./.:0,0:0 ./.:0,0:0 0/0:2,0:2:3:0,3,45 ./.:3,0:3 ./.:0,0:0 ./.:0,0:0 ./.:2,0:2 0/0:1,0:1:3:0,3,33 ./.:3,0:3 ./.:1,0:1 ./.:0,0:0 ./.:2,0:2 1/1:0,4:4:12:139,12,0 ./.:2,0:2 ./.:0,0:0 ./.:0,0:0 ./.:0,0:0 1 11082054 rs3835416 AG A 130162.47 . AC=151;AF=0.770;AN=196;BaseQRankSum=0.071;ClippingRankSum=0.058;DB;DP=4348;FS=0.000;InbreedingCoeff=-0.0186;MLEAC=152;MLEAF=0.776;MQ=59.53;MQRankSum=0.028;QD=31.57;ReadPosRankSum=-7.400e-02;SOR=0.841 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1691,127,0 1/1:0,64:64:99:2547,193,0 0/1:23,38:61:99:1317,0,737 1/1:0,44:44:99:1754,132,0 1/1:0,41:41:99:1645,123,0 1/1:2,86:88:99:3363,184,0 0/1:20,9:29:99:271,0,714 0/0:37,0:37:90:0,90,1350 1/1:0,34:34:99:1359,102,0 1/1:1,171:172:99:6844,477,0 1/1:0,25:25:75:998,75,0 0/1:10,20:30:99:716,0,310 0/0:2,0:2:6:0,6,71 0/1:20,17:37:99:574,0,697 1/1:0,38:38:99:1505,114,0 1/1:0,37:37:99:1474,111,0 1/1:0,38:38:99:1512,114,0 0/1:21,24:45:99:829,0,697 0/1:25,18:43:99:563,0,881 1/1:0,10:10:30:399,30,0 1/1:0,33:33:99:1321,99,0 1/1:1,77:78:99:3063,194,0 1/1:0,23:23:69:928,69,0 1/1:0,89:89:99:3555,268,0 0/1:11,17:28:99:591,0,355 1/1:0,9:9:27:360,27,0 1/1:0,33:33:99:1325,99,0 1/1:0,38:38:99:1538,114,0 1/1:0,25:25:75:1012,75,0 0/1:27,13:40:99:401,0,964 1/1:0,33:33:99:1316,99,0 0/1:17,15:32:99:501,0,583 1/1:0,36:36:99:1444,108,0 1/1:0,23:23:69:927,69,0 1/1:0,44:44:99:1763,133,0 0/1:42,49:91:99:1687,0,1424 1/1:0,28:28:84:1116,84,0 1/1:0,38:38:99:1521,114,0 0/1:19,18:37:99:606,0,657 0/1:15,26:41:99:920,0,475 0/0:29,0:29:72:0,72,1080 1/1:0,15:15:45:599,45,0 1/1:0,32:32:96:1292,96,0 1/1:0,23:23:69:923,69,0 0/1:12,7:19:99:226,0,428 0/1:32,27:59:99:901,0,1085 0/1:30,30:60:99:1020,0,1024 1/1:2,76:78:99:2967,154,0 1/1:0,38:38:99:1524,114,0 1/1:0,24:24:72:950,72,0 0/1:20,21:41:99:711,0,680 0/1:20,12:32:99:376,0,706 1/1:0,35:35:99:1410,105,0 1/1:0,35:35:99:1392,105,0 1/1:0,34:34:99:1360,102,0 ./.:0,0:0 1/1:0,60:60:99:2371,181,0 1/1:0,109:109:99:4329,328,0 0/1:9,16:25:99:572,0,287 0/1:19,20:39:99:663,0,643 1/1:0,58:58:99:2331,175,0 0/1:15,13:28:99:442,0,510 1/1:0,30:30:90:1196,90,0 0/1:7,14:21:99:501,0,220 0/1:16,18:34:99:612,0,536 1/1:0,43:43:99:1731,130,0 1/1:0,22:22:66:890,66,0 0/0:37,0:37:99:0,99,1434 1/1:0,30:30:90:1188,90,0 0/1:14,17:31:99:587,0,468 1/1:0,36:36:99:1422,108,0 0/0:34,0:34:90:0,90,1350 0/1:20,28:48:99:981,0,657 0/1:27,31:58:99:1051,0,913 1/1:1,58:59:99:2286,137,0 1/1:1,77:78:99:3034,194,0 1/1:0,41:41:99:1609,123,0 1/1:0,131:131:99:5209,395,0 0/1:42,27:69:99:864,0,1467 1/1:0,31:31:93:1249,93,0 0/1:26,23:49:99:768,0,895 1/1:0,49:49:99:1974,148,0 0/1:15,23:38:99:810,0,487 1/1:0,29:29:87:1171,87,0 1/1:0,12:12:36:485,36,0 0/1:62,83:145:99:2850,0,2043 0/1:25,25:50:99:838,0,842 1/1:0,51:51:99:2034,154,0 1/1:0,30:30:90:1204,90,0 0/1:11,8:19:99:266,0,384 0/1:16,20:36:99:694,0,538 1/1:0,91:91:99:3626,274,0 1/1:0,25:25:75:989,75,0 ./.:1,0:1 0/1:19,19:38:99:652,0,654 1/1:0,60:60:99:2380,181,0 1/1:0,27:27:81:1089,81,0 0/1:9,14:23:99:491,0,289 1/1:0,46:46:99:1841,139,0 0/1:12,10:22:99:335,0,419 1 11082106 rs202106921 C CT 525.86 . AC=1;AF=5.051e-03;AN=198;BaseQRankSum=1.52;ClippingRankSum=-2.680e-01;DB;DP=4145;FS=2.513;InbreedingCoeff=-0.0085;MLEAC=1;MLEAF=5.051e-03;MQ=60.40;MQRankSum=-2.186e+00;QD=11.43;ReadPosRankSum=-1.560e-01;SOR=0.180 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,105,1575 0/0:54,0:54:99:0,99,1485 0/0:53,0:53:99:0,120,1800 0/0:43,0:43:99:0,102,1530 0/0:42,0:42:99:0,99,1485 0/0:51,0:51:99:0,111,1665 0/0:41,0:41:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:39,0:39:99:0,99,1473 0/0:49,0:49:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:34,0:34:81:0,81,1215 0/0:1,0:1:3:0,3,34 0/0:38,0:38:99:0,99,1485 0/0:47,0:47:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:44,0:44:99:0,102,1530 0/0:50,0:50:99:0,120,1800 0/0:10,0:10:30:0,30,335 0/0:38,0:38:99:0,99,1485 0/0:49,0:49:99:0,99,1485 0/0:29,0:29:72:0,72,1080 0/0:71,0:71:99:0,120,1800 0/0:35,0:35:99:0,102,1530 0/0:5,0:5:9:0,9,135 0/0:36,0:36:90:0,90,1350 0/1:27,19:46:99:568,0,871 0/0:31,0:31:81:0,81,1215 0/0:39,0:39:99:0,99,1485 0/0:32,0:32:60:0,60,900 0/0:43,0:43:99:0,102,1530 0/0:38,0:38:84:0,84,1260 0/0:38,0:38:90:0,90,1350 0/0:47,0:47:99:0,105,1575 0/0:82,0:82:99:0,113,1800 0/0:39,0:39:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:38,0:38:93:0,93,1395 0/0:26,0:26:60:0,60,900 0/0:24,0:24:60:0,60,900 0/0:40,0:40:99:0,99,1485 0/0:28,0:28:72:0,72,1080 0/0:39,0:39:99:0,102,1530 0/0:49,0:49:99:0,99,1485 0/0:62,0:62:99:0,102,1530 0/0:68,0:68:99:0,117,1755 0/0:43,0:43:99:0,99,1485 0/0:32,0:32:90:0,90,1350 0/0:39,0:39:90:0,90,1350 0/0:42,0:42:96:0,96,1440 0/0:36,0:36:90:0,90,1350 0/0:40,0:40:99:0,99,1485 0/0:50,0:50:99:0,102,1530 ./.:0,0:0 0/0:50,0:50:99:0,105,1575 0/0:72,0:72:99:0,120,1800 0/0:40,0:40:93:0,93,1395 0/0:40,0:40:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:37,0:37:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:37,0:37:99:0,99,1485 0/0:38,0:38:90:0,90,1350 0/0:43,0:43:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:37,0:37:99:0,99,1485 0/0:30,0:30:69:0,69,1035 0/0:38,0:38:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:46,0:46:99:0,102,1530 0/0:49,0:49:99:0,111,1665 0/0:42,0:42:99:0,99,1485 0/0:56,0:56:99:0,120,1800 0/0:40,0:40:99:0,99,1485 0/0:104,0:104:99:0,120,1800 0/0:51,0:51:99:0,105,1575 0/0:41,0:41:96:0,96,1440 0/0:46,0:46:99:0,99,1485 0/0:47,0:47:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:16,0:16:45:0,45,675 0/0:103,0:103:99:0,120,1800 0/0:45,0:45:99:0,102,1530 0/0:48,0:48:99:0,99,1485 0/0:31,0:31:60:0,60,900 0/0:28,0:28:69:0,69,1035 0/0:41,0:41:99:0,99,1485 0/0:46,0:46:99:0,99,1485 0/0:37,0:37:93:0,93,1395 0/0:1,0:1:3:0,3,34 0/0:40,0:40:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:19,0:19:33:0,33,495 0/0:47,0:47:99:0,102,1530 0/0:44,0:44:99:0,102,1530 1 11082919 rs148414479 G A 6879.02 . AC=10;AF=0.051;AN=198;BaseQRankSum=-2.832e+00;ClippingRankSum=0.020;DB;DP=4295;FS=0.603;InbreedingCoeff=-0.0552;MLEAC=10;MLEAF=0.051;MQ=32.35;MQRankSum=-2.390e-01;QD=9.91;ReadPosRankSum=-8.530e-01;SOR=0.776 GT:AD:DP:GQ:PL 0/0:45,0:45:99:0,99,1485 0/1:42,46:88:99:1129,0,1095 0/0:53,0:53:99:0,120,1800 0/0:41,0:41:99:0,99,1485 0/1:36,25:61:99:604,0,945 0/0:51,0:51:99:0,111,1665 0/0:34,0:34:72:0,72,1080 0/0:37,0:37:99:0,99,1485 0/0:37,0:37:81:0,81,1215 0/0:49,0:49:99:0,99,1485 0/0:27,0:27:60:0,60,900 0/0:33,0:33:75:0,75,1125 0/0:5,0:5:15:0,15,181 0/0:44,0:44:96:0,96,1440 0/0:46,0:46:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:38,0:38:90:0,90,1350 0/0:43,0:43:99:0,102,1530 0/0:50,0:50:99:0,120,1800 0/0:11,0:11:21:0,21,315 0/0:45,0:45:99:0,102,1530 0/0:49,0:49:99:0,99,1485 0/0:31,0:31:81:0,81,1215 0/0:71,0:71:99:0,120,1800 0/0:28,0:28:60:0,60,900 0/0:25,0:25:60:0,60,900 0/0:45,0:45:78:0,78,1170 0/0:40,0:40:93:0,93,1395 0/0:35,0:35:81:0,81,1215 0/0:42,0:42:99:0,99,1485 0/0:23,0:23:51:0,51,765 0/0:36,0:36:75:0,75,1125 0/0:48,0:48:90:0,90,1350 0/0:31,0:31:69:0,69,1035 0/0:38,0:38:99:0,99,1485 0/0:82,0:82:99:0,113,1800 0/0:37,0:37:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:44,0:44:90:0,90,1350 0/0:33,0:33:81:0,81,1215 0/0:28,0:28:60:0,60,900 0/1:14,8:22:99:171,0,356 0/0:43,0:43:99:0,102,1530 0/1:13,10:23:99:229,0,300 0/0:26,0:26:48:0,48,720 0/0:41,0:41:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:50,0:50:99:0,102,1530 0/0:43,0:43:99:0,99,1485 0/0:23,0:23:39:0,39,585 0/0:41,0:41:99:0,99,1485 0/0:32,0:32:72:0,72,1080 0/0:41,0:41:99:0,99,1485 0/0:44,0:44:90:0,90,1350 0/0:41,0:41:99:0,108,1620 ./.:0,0:0 0/0:50,0:50:99:0,105,1575 0/1:92,53:145:99:1199,0,2388 0/0:41,0:41:81:0,81,1215 0/0:43,0:43:87:0,87,1305 0/0:45,0:45:99:0,99,1485 0/0:37,0:37:99:0,99,1485 0/1:32,25:57:99:614,0,785 0/0:34,0:34:84:0,84,1260 0/0:43,0:43:75:0,75,1125 0/0:45,0:45:96:0,96,1440 0/0:34,0:34:60:0,60,900 0/0:39,0:39:99:0,102,1530 0/0:35,0:35:66:0,66,990 0/0:27,0:27:51:0,51,765 0/0:40,0:40:99:0,99,1485 0/0:40,0:40:72:0,72,1080 0/0:39,0:39:99:0,99,1485 0/0:49,0:49:99:0,111,1665 0/0:42,0:42:99:0,99,1485 0/1:58,36:94:99:775,0,1465 0/0:43,0:43:99:0,99,1485 0/0:104,0:104:99:0,120,1800 0/0:48,0:48:99:0,99,1485 0/0:41,0:41:99:0,102,1504 0/0:46,0:46:99:0,99,1485 0/0:38,0:38:99:0,102,1530 0/0:44,0:44:99:0,99,1485 0/1:27,36:63:99:937,0,672 0/0:16,0:16:45:0,45,675 0/0:103,0:103:99:0,120,1800 0/0:45,0:45:99:0,102,1530 0/0:40,0:40:99:0,102,1530 0/0:28,0:28:51:0,51,765 0/0:28,0:28:42:0,42,630 0/0:47,0:47:96:0,96,1440 0/1:55,49:104:99:1114,0,1473 0/1:25,12:37:99:262,0,685 0/0:1,0:1:3:0,3,34 0/0:39,0:39:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:40,0:40:75:0,75,1125 0/0:34,0:34:63:0,63,945 0/0:41,0:41:99:0,99,1485 0/0:43,0:43:99:0,105,1575 1 11083707 . C T 4348.77 . AC=1;AF=5.000e-03;AN=200;BaseQRankSum=-4.035e+00;ClippingRankSum=0.197;DP=4663;FS=11.141;InbreedingCoeff=-0.0073;MLEAC=1;MLEAF=5.000e-03;MQ=47.54;MQRankSum=1.66;QD=15.10;ReadPosRankSum=2.34;SOR=0.843 GT:AD:DP:GQ:PL 0/0:45,0:45:99:0,99,1485 0/0:69,0:69:99:0,111,1665 0/0:53,0:53:99:0,120,1800 0/0:44,0:44:99:0,99,1485 0/0:46,0:46:99:0,99,1485 0/0:51,0:51:99:0,111,1665 0/0:40,0:40:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:49,0:49:99:0,99,1485 0/0:38,0:38:99:0,99,1302 0/0:42,0:42:99:0,99,1485 0/0:7,0:7:18:0,18,270 0/0:37,0:37:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:44,0:44:99:0,105,1575 0/0:50,0:50:99:0,120,1800 0/0:23,0:23:60:0,60,900 0/0:45,0:45:99:0,102,1530 0/0:49,0:49:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:71,0:71:99:0,120,1800 0/0:44,0:44:99:0,102,1530 0/0:42,0:42:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:33,0:33:93:0,93,1395 0/0:45,0:45:99:0,99,1485 0/0:47,0:47:99:0,105,1575 0/0:41,0:41:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:44,0:44:99:0,102,1530 0/0:82,0:82:99:0,113,1800 0/0:41,0:41:99:0,99,1485 0/0:40,0:40:99:0,102,1465 0/0:47,0:47:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:37,0:37:76:0,76,1342 0/0:41,0:41:99:0,102,1530 0/0:36,0:36:99:0,99,1485 0/0:38,0:38:99:0,102,1530 0/0:43,0:43:99:0,102,1530 0/0:41,0:41:99:0,99,1485 0/0:46,0:46:99:0,102,1530 0/0:50,0:50:99:0,102,1530 0/0:46,0:46:99:0,99,1485 0/0:42,0:42:99:0,105,1575 0/0:43,0:43:99:0,99,1485 0/0:46,0:46:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:44,0:44:99:0,102,1530 0/0:40,0:40:99:0,99,1485 0/0:3,0:3:9:0,9,95 0/0:50,0:50:99:0,105,1575 0/0:97,0:97:99:0,120,1800 0/0:40,0:40:99:0,99,1324 0/0:42,0:42:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:47,0:47:99:0,105,1575 0/0:48,0:48:99:0,105,1575 0/0:43,0:43:99:0,99,1485 0/0:47,0:47:99:0,104,1531 0/0:44,0:44:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:47,0:47:99:0,105,1575 0/0:35,0:35:99:0,102,1530 0/0:40,0:40:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:39,0:39:99:0,102,1530 0/0:39,0:39:99:0,99,1485 0/0:49,0:49:99:0,111,1665 0/0:42,0:42:99:0,99,1485 0/0:68,0:68:99:0,120,1800 0/0:46,0:46:99:0,102,1530 0/1:144,144:288:99:4391,0,4389 0/0:48,0:48:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:46,0:46:99:0,99,1485 0/0:38,0:38:99:0,102,1530 0/0:44,0:44:99:0,99,1485 0/0:47,0:47:99:0,102,1530 0/0:17,0:17:48:0,48,720 0/0:103,0:103:99:0,120,1800 0/0:45,0:45:99:0,102,1530 0/0:40,0:40:99:0,102,1530 0/0:39,0:39:99:0,104,1350 0/0:38,0:38:99:0,99,1485 0/0:42,0:42:99:0,102,1530 0/0:88,0:88:99:0,117,1755 0/0:36,0:36:96:0,96,1440 0/0:2,0:2:3:0,3,45 0/0:39,0:39:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:57,0:57:99:0,120,1800 1 11083789 . C G 704.83 . AC=1;AF=5.051e-03;AN=198;BaseQRankSum=1.90;ClippingRankSum=0.738;DP=4505;FS=0.955;InbreedingCoeff=-0.0061;MLEAC=1;MLEAF=5.051e-03;MQ=41.55;MQRankSum=-4.230e-01;QD=10.37;ReadPosRankSum=0.498;SOR=0.867 GT:AD:DP:GQ:PL 0/0:45,0:45:99:0,99,1485 0/0:69,0:69:99:0,111,1665 0/0:53,0:53:99:0,120,1800 0/0:44,0:44:99:0,99,1485 0/0:46,0:46:99:0,99,1485 0/0:51,0:51:99:0,111,1665 0/0:46,0:46:93:0,93,1395 0/0:43,0:43:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:49,0:49:99:0,99,1485 0/0:38,0:38:99:0,99,1302 0/0:34,0:34:72:0,72,1080 ./.:3,0:3 0/0:37,0:37:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:42,0:42:99:0,99,1437 0/0:44,0:44:99:0,105,1575 0/0:50,0:50:99:0,120,1800 0/0:11,0:11:27:0,27,405 0/0:45,0:45:99:0,102,1530 0/0:49,0:49:99:0,99,1485 0/0:47,0:47:99:0,99,1485 0/0:71,0:71:99:0,120,1800 0/0:30,0:30:63:0,63,945 0/0:41,0:41:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:38,0:38:99:0,108,1475 0/0:45,0:45:99:0,99,1485 0/0:46,0:46:90:0,90,1350 0/0:41,0:41:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:32,0:32:72:0,72,1080 0/0:44,0:44:99:0,102,1530 0/0:82,0:82:99:0,113,1800 0/0:41,0:41:99:0,99,1485 0/1:42,26:68:99:747,0,1273 0/0:48,0:48:90:0,90,1350 0/0:45,0:45:99:0,99,1485 0/0:26,0:26:60:0,60,900 0/0:35,0:35:69:0,69,1035 0/0:41,0:41:78:0,78,1170 0/0:25,0:25:54:0,54,810 0/0:43,0:43:99:0,102,1530 0/0:41,0:41:99:0,99,1485 0/0:46,0:46:99:0,102,1530 0/0:50,0:50:99:0,102,1530 0/0:46,0:46:99:0,99,1485 0/0:33,0:33:75:0,75,1125 0/0:43,0:43:99:0,99,1485 0/0:46,0:46:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:44,0:44:99:0,102,1530 0/0:40,0:40:99:0,99,1485 0/0:1,0:1:3:0,3,27 0/0:50,0:50:99:0,105,1575 0/0:97,0:97:99:0,120,1800 0/0:43,0:43:90:0,90,1350 0/0:42,0:42:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:47,0:47:99:0,105,1575 0/0:48,0:48:99:0,105,1575 0/0:42,0:42:90:0,90,1350 0/0:47,0:47:99:0,104,1531 0/0:44,0:44:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:47,0:47:99:0,105,1575 0/0:35,0:35:99:0,102,1530 0/0:53,0:53:96:0,96,1440 0/0:40,0:40:99:0,99,1485 0/0:30,0:30:72:0,72,1080 0/0:39,0:39:99:0,99,1485 0/0:49,0:49:99:0,111,1665 0/0:42,0:42:99:0,99,1485 0/0:68,0:68:99:0,120,1800 0/0:46,0:46:99:0,102,1530 0/0:154,0:154:99:0,120,1800 0/0:48,0:48:99:0,99,1485 0/0:39,0:39:90:0,90,1350 0/0:46,0:46:99:0,99,1485 0/0:38,0:38:99:0,102,1530 0/0:44,0:44:99:0,99,1485 0/0:47,0:47:99:0,102,1530 0/0:23,0:23:60:0,60,900 0/0:103,0:103:99:0,120,1800 0/0:45,0:45:99:0,102,1530 0/0:40,0:40:99:0,102,1530 0/0:42,0:42:93:0,93,1395 0/0:37,0:37:93:0,93,1395 0/0:42,0:42:99:0,102,1530 0/0:88,0:88:99:0,117,1755 0/0:38,0:38:90:0,90,1350 0/0:3,0:3:6:0,6,90 0/0:39,0:39:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:57,0:57:99:0,120,1800 1 11084333 . A T 1026.83 . AC=1;AF=5.000e-03;AN=200;BaseQRankSum=-2.150e-01;ClippingRankSum=0.293;DP=4667;FS=0.000;InbreedingCoeff=-0.0087;MLEAC=1;MLEAF=5.000e-03;MQ=59.44;MQRankSum=-9.330e-01;QD=14.07;ReadPosRankSum=-1.850e+00;SOR=0.641 GT:AD:DP:GQ:PL 0/0:42,0:42:99:0,99,1485 0/0:69,0:69:99:0,111,1665 0/0:53,0:53:99:0,120,1800 0/0:41,0:41:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:51,0:51:99:0,111,1665 0/0:42,0:42:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:49,0:49:99:0,102,1530 0/0:42,0:42:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:2,0:2:6:0,6,65 0/0:46,0:46:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:39,0:39:99:0,105,1575 0/0:41,0:41:99:0,99,1485 0/0:46,0:46:99:0,99,1485 0/0:50,0:50:99:0,120,1800 0/0:24,0:24:60:0,60,900 0/0:41,0:41:99:0,99,1485 0/0:49,0:49:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:71,0:71:99:0,120,1800 0/0:37,0:37:99:0,99,1485 0/0:21,0:21:63:0,63,652 0/0:45,0:45:99:0,99,1485 0/0:82,0:82:95:0,95,2687 0/0:41,0:41:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/1:35,38:73:99:1069,0,952 0/0:45,0:45:99:0,99,1485 0/0:39,0:39:99:0,102,1530 0/0:48,0:48:99:0,102,1530 0/0:44,0:44:99:0,102,1530 0/0:82,0:82:99:0,113,1800 0/0:38,0:38:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:43,0:43:99:0,102,1530 0/0:43,0:43:99:0,102,1530 0/0:55,0:55:90:0,90,1836 0/0:44,0:44:99:0,102,1530 0/0:40,0:40:99:0,99,1485 0/0:64,0:64:60:0,60,1989 0/0:38,0:38:99:0,102,1530 0/0:41,0:41:99:0,99,1485 0/0:46,0:46:99:0,102,1530 0/0:50,0:50:99:0,102,1530 0/0:47,0:47:99:0,99,1485 0/0:36,0:36:99:0,99,1485 0/0:42,0:42:99:0,102,1530 0/0:44,0:44:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:4,0:4:12:0,12,132 0/0:50,0:50:99:0,105,1575 0/0:97,0:97:99:0,120,1800 0/0:42,0:42:99:0,99,1485 0/0:44,0:44:99:0,102,1530 0/0:45,0:45:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:35,0:35:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:37,0:37:99:0,99,1479 0/0:38,0:38:99:0,99,1485 0/0:48,0:48:41:0,41,1508 0/0:39,0:39:99:0,99,1485 0/0:49,0:49:99:0,111,1665 0/0:42,0:42:99:0,99,1485 0/0:68,0:68:99:0,120,1800 0/0:46,0:46:99:0,102,1530 0/0:154,0:154:99:0,120,1800 0/0:48,0:48:99:0,99,1485 0/0:47,0:47:99:0,102,1530 0/0:46,0:46:99:0,99,1485 0/0:38,0:38:99:0,102,1530 0/0:44,0:44:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:103,0:103:99:0,120,1800 0/0:45,0:45:99:0,102,1530 0/0:40,0:40:99:0,102,1530 0/0:65,0:65:91:0,91,2147 0/0:44,0:44:82:0,82,1476 0/0:51,0:51:99:0,105,1575 0/0:88,0:88:99:0,117,1755 0/0:39,0:39:99:0,102,1530 0/0:3,0:3:0:0,0,34 0/0:40,0:40:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:37,0:37:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:72,0:72:99:0,120,1800 1 11084594 . G T 3463.77 . AC=1;AF=5.000e-03;AN=200;BaseQRankSum=-3.504e+00;ClippingRankSum=-5.640e-01;DP=4702;FS=0.000;InbreedingCoeff=-0.0064;MLEAC=1;MLEAF=5.000e-03;MQ=58.82;MQRankSum=0.631;QD=12.33;ReadPosRankSum=0.357;SOR=0.678 GT:AD:DP:GQ:PL 0/0:42,0:42:99:0,99,1485 0/0:69,0:69:99:0,111,1665 0/0:53,0:53:99:0,120,1800 0/0:41,0:41:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:51,0:51:99:0,111,1665 0/0:42,0:42:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:49,0:49:99:0,102,1530 0/0:42,0:42:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:1,0:1:3:0,3,32 0/0:46,0:46:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:39,0:39:99:0,105,1575 0/0:41,0:41:99:0,99,1485 0/0:46,0:46:99:0,99,1485 0/0:50,0:50:99:0,120,1800 0/0:17,0:17:45:0,45,675 0/0:41,0:41:99:0,99,1485 0/0:49,0:49:99:0,99,1485 0/0:48,0:48:99:0,99,1485 0/0:71,0:71:99:0,120,1800 0/0:37,0:37:99:0,99,1485 0/0:17,0:17:36:0,36,540 0/0:45,0:45:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:47,0:47:96:0,96,1440 0/0:45,0:45:99:0,99,1485 0/0:39,0:39:99:0,102,1530 0/0:43,0:43:99:0,99,1485 0/0:44,0:44:99:0,102,1530 0/0:82,0:82:99:0,113,1800 0/0:38,0:38:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:43,0:43:99:0,102,1530 0/0:43,0:43:99:0,102,1530 0/0:45,0:45:99:0,99,1485 0/0:41,0:41:90:0,90,1350 0/0:40,0:40:99:0,99,1485 0/0:42,0:42:84:0,84,1260 0/0:41,0:41:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:46,0:46:99:0,102,1530 0/0:50,0:50:99:0,102,1530 0/0:47,0:47:99:0,99,1485 0/0:45,0:45:90:0,90,1350 0/0:42,0:42:99:0,102,1530 0/0:44,0:44:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:7,0:7:15:0,15,225 0/0:50,0:50:99:0,105,1575 0/0:97,0:97:99:0,120,1800 0/0:42,0:42:99:0,105,1575 0/0:44,0:44:99:0,102,1530 0/0:45,0:45:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:35,0:35:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:37,0:37:99:0,99,1479 0/0:38,0:38:99:0,99,1485 0/0:38,0:38:72:0,72,1080 0/0:39,0:39:99:0,99,1485 0/0:49,0:49:99:0,111,1665 0/0:42,0:42:99:0,99,1485 0/0:68,0:68:99:0,120,1800 0/0:46,0:46:99:0,102,1530 0/0:154,0:154:99:0,120,1800 0/0:48,0:48:99:0,99,1485 0/0:47,0:47:99:0,102,1530 0/0:46,0:46:99:0,99,1485 0/0:38,0:38:99:0,102,1530 0/0:44,0:44:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:16,0:16:36:0,36,540 0/1:162,119:281:99:3506,0,5219 0/0:45,0:45:99:0,102,1530 0/0:40,0:40:99:0,102,1530 0/0:42,0:42:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:51,0:51:99:0,105,1575 0/0:88,0:88:99:0,117,1755 0/0:42,0:42:99:0,99,1485 0/0:5,0:5:15:0,15,176 0/0:40,0:40:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:45,0:45:99:0,102,1530 0/0:41,0:41:99:0,99,1485 0/0:72,0:72:99:0,120,1800 1 11084865 . G T 510.82 . AC=1;AF=5.000e-03;AN=200;BaseQRankSum=-2.861e+00;ClippingRankSum=0.195;DP=4636;FS=2.524;InbreedingCoeff=-0.0081;MLEAC=1;MLEAF=5.000e-03;MQ=56.31;MQRankSum=0.195;QD=11.35;ReadPosRankSum=0.172;SOR=1.093 GT:AD:DP:GQ:PL 0/0:42,0:42:99:0,99,1485 0/0:69,0:69:99:0,111,1665 0/0:53,0:53:99:0,120,1800 0/0:41,0:41:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:51,0:51:99:0,111,1665 0/0:42,0:42:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:49,0:49:99:0,102,1530 0/0:44,0:44:99:0,102,1530 0/1:26,19:45:99:553,0,824 0/0:4,0:4:9:0,9,135 0/0:51,0:51:99:0,115,1755 0/0:47,0:47:99:0,102,1530 0/0:39,0:39:99:0,105,1575 0/0:41,0:41:99:0,99,1485 0/0:46,0:46:99:0,99,1485 0/0:50,0:50:99:0,120,1800 0/0:17,0:17:51:0,51,589 0/0:41,0:41:99:0,99,1485 0/0:49,0:49:99:0,99,1485 0/0:46,0:46:99:0,99,1485 0/0:71,0:71:99:0,120,1800 0/0:37,0:37:99:0,99,1485 0/0:6,0:6:15:0,15,225 0/0:40,0:40:99:0,100,1530 0/0:45,0:45:99:0,99,1485 0/0:47,0:47:99:0,102,1530 0/0:44,0:44:99:0,99,1485 0/0:48,0:48:84:0,84,1260 0/0:45,0:45:99:0,99,1485 0/0:39,0:39:99:0,102,1530 0/0:37,0:37:87:0,87,1305 0/0:44,0:44:99:0,102,1530 0/0:82,0:82:99:0,113,1800 0/0:38,0:38:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:43,0:43:99:0,102,1530 0/0:42,0:42:99:0,99,1485 0/0:35,0:35:84:0,84,1260 0/0:39,0:39:78:0,78,1170 0/0:40,0:40:99:0,99,1485 0/0:44,0:44:99:0,102,1530 0/0:48,0:48:96:0,96,1440 0/0:41,0:41:99:0,99,1485 0/0:46,0:46:99:0,102,1530 0/0:50,0:50:99:0,102,1530 0/0:47,0:47:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:42,0:42:99:0,102,1530 0/0:44,0:44:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:1,0:1:3:0,3,29 0/0:50,0:50:99:0,105,1575 0/0:97,0:97:99:0,120,1800 0/0:46,0:46:99:0,99,1485 0/0:48,0:48:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:35,0:35:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:37,0:37:99:0,99,1479 0/0:38,0:38:99:0,99,1485 0/0:35,0:35:81:0,81,1215 0/0:39,0:39:99:0,99,1485 0/0:49,0:49:99:0,111,1665 0/0:42,0:42:99:0,99,1485 0/0:68,0:68:99:0,120,1800 0/0:46,0:46:99:0,102,1530 0/0:154,0:154:99:0,120,1800 0/0:48,0:48:99:0,99,1485 0/0:47,0:47:99:0,102,1530 0/0:46,0:46:99:0,99,1485 0/0:38,0:38:99:0,102,1530 0/0:44,0:44:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:23,0:23:48:0,48,720 0/0:224,0:224:99:0,120,1800 0/0:45,0:45:99:0,102,1530 0/0:40,0:40:99:0,102,1530 0/0:30,0:30:63:0,63,945 0/0:42,0:42:90:0,90,1350 0/0:51,0:51:99:0,105,1575 0/0:88,0:88:99:0,117,1755 0/0:46,0:46:99:0,102,1530 0/0:1,0:1:3:0,3,37 0/0:40,0:40:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:44,0:44:99:0,102,1530 0/0:39,0:39:99:0,102,1530 0/0:41,0:41:99:0,99,1485 0/0:72,0:72:99:0,120,1800 1 11085004 rs5772439 A ATGTTT 326280.62 . AC=154;AF=0.802;AN=192;BaseQRankSum=-4.260e-01;ClippingRankSum=-9.700e-02;DB;DP=8934;FS=0.000;InbreedingCoeff=0.0157;MLEAC=154;MLEAF=0.802;MQ=34.93;MQRankSum=-5.861e+00;QD=30.63;ReadPosRankSum=-1.643e+00;SOR=0.646 GT:AD:DP:GQ:PL 1/1:0,69:69:99:3355,225,0 1/1:0,105:105:99:5168,348,0 0/1:80,69:149:99:3022,0,5464 1/1:0,106:106:99:5142,346,0 1/1:0,94:94:99:4614,312,0 1/1:2,145:147:99:7252,361,0 0/1:26,41:67:99:1843,0,1621 0/0:45,0:45:99:0,99,1485 1/1:0,72:72:99:3481,234,0 1/1:1,281:282:99:13824,859,0 1/1:0,62:62:99:2903,195,0 1/1:0,33:33:99:1529,102,0 ./.:2,0:2 0/1:38,32:70:99:1277,0,2514 1/1:0,57:57:99:2903,195,0 1/1:0,65:65:99:3194,213,0 1/1:0,72:72:99:3333,225,0 0/1:39,42:81:99:1729,0,2679 0/1:72,61:133:99:2508,0,4830 1/1:0,20:20:63:944,63,0 1/1:0,102:102:99:4936,333,0 0/1:6,123:129:28:5688,0,28 1/1:0,68:68:99:3175,213,0 1/1:0,198:198:99:9606,645,0 0/1:31,22:53:99:830,0,2055 ./.:0,0:0 1/1:0,73:73:99:3691,249,0 1/1:0,64:64:99:3049,204,0 1/1:0,62:62:99:2825,189,0 0/1:34,30:64:99:1403,0,2235 1/1:0,46:46:99:2201,150,0 0/1:30,38:68:99:1622,0,1952 1/1:0,78:78:99:3625,243,0 1/1:0,60:60:99:2879,192,0 1/1:0,84:84:99:3921,265,0 0/1:109,80:189:99:3503,0,7314 1/1:0,78:78:99:3805,255,0 1/1:0,67:67:99:3268,219,0 0/1:50,30:80:99:1109,0,3259 0/1:31,20:51:99:857,0,2185 0/0:37,0:37:99:0,99,1485 1/1:0,38:38:99:1799,120,0 1/1:0,68:68:99:3368,225,0 1/1:0,45:45:99:2222,150,0 0/1:29,28:57:99:1256,0,1944 0/1:59,61:120:99:2583,0,3908 0/1:47,44:91:99:1762,0,3172 1/1:3,151:154:99:7309,302,0 1/1:0,87:87:99:4129,276,0 1/1:0,44:44:99:2241,153,0 0/1:40,33:73:99:1296,0,2811 0/1:33,25:58:99:1060,0,2254 1/1:0,78:78:99:3819,255,0 1/1:0,77:77:99:3673,246,0 1/1:0,103:103:99:4734,318,0 ./.:1,0:1 1/1:1,135:136:99:6574,380,0 1/1:2,196:198:99:9723,526,0 0/1:26,20:46:99:950,0,1811 0/1:33,30:63:99:1322,0,2103 1/1:2,101:103:99:4966,196,0 1/1:1,77:78:99:3499,166,0 1/1:0,76:76:99:3885,261,0 1/1:0,37:37:99:1933,129,0 0/1:42,32:74:99:1394,0,2937 1/1:0,85:85:99:4077,276,0 1/1:0,68:68:99:3251,219,0 0/0:44,0:44:99:0,99,1485 1/1:0,70:70:99:3644,243,0 0/1:39,24:63:99:974,0,2565 1/1:0,67:67:99:3185,213,0 0/0:35,0:35:90:0,90,1350 0/1:46,46:92:99:1876,0,3055 1/1:1,119:120:99:6162,349,0 1/1:2,117:119:99:5497,232,0 1/1:2,150:152:99:7090,337,0 1/1:0,117:117:99:5688,381,0 1/1:3,257:260:99:12878,659,0 0/1:78,60:138:99:2520,0,5437 1/1:1,69:70:99:3190,145,0 0/1:58,51:109:99:2153,0,3991 1/1:0,84:84:99:4286,288,0 0/1:54,43:97:99:1843,0,3634 1/1:0,75:75:99:3625,243,0 1/1:0,20:20:72:1071,72,0 0/1:146,139:285:99:5914,0,9774 0/1:84,63:147:99:2728,0,5859 1/1:0,90:90:99:4342,291,0 1/1:0,29:29:96:1428,96,0 0/1:25,23:48:99:1006,0,1718 0/1:42,56:98:99:2218,0,2909 1/1:2,123:125:99:6017,265,0 1/1:0,61:61:99:3054,204,0 ./.:0,0:0 1/1:00,103:103:99:5315,357,0 1/1:0,54:54:99:2673,180,0 1/1:0,67:67:99:3365,225,0 1/1:0,93:93:99:4608,310,0 0/1:55,33:88:99:1338,0,3525 1 11846252 rs4846048 G A 27217.50 . AC=121;AF=0.644;AN=188;BaseQRankSum=-1.002e+00;ClippingRankSum=0.259;DB;DP=1185;FS=0.000;InbreedingCoeff=0.2140;MLEAC=130;MLEAF=0.691;MQ=59.63;MQRankSum=0.00;QD=27.38;ReadPosRankSum=0.143;SOR=0.697 GT:AD:DP:GQ:PL 0/1:8,8:16:99:253,0,263 0/1:15,7:22:99:192,0,512 0/1:12,7:19:99:200,0,389 1/1:0,15:15:45:556,45,0 1/1:0,12:12:36:430,36,0 1/1:0,19:19:57:691,57,0 0/1:9,6:15:99:168,0,279 1/1:0,10:10:30:358,30,0 1/1:0,10:10:30:373,30,0 0/0:14,0:14:9:0,9,468 0/0:7,0:7:0:0,0,39 0/0:5,0:5:0:0,0,43 0/0:3,0:3:0:0,0,37 1/1:0,8:8:24:290,24,0 1/1:0,13:13:39:458,39,0 1/1:0,7:7:21:261,21,0 0/1:5,5:10:99:159,0,165 0/1:5,10:15:99:307,0,147 1/1:0,14:14:42:492,42,0 ./.:2,0:2 1/1:0,17:17:51:644,51,0 0/1:5,16:21:99:521,0,128 1/1:0,10:10:30:373,30,0 1/1:0,20:20:60:696,60,0 ./.:2,0:2 1/1:0,18:18:54:643,54,0 0/1:5,8:13:99:254,0,157 1/1:0,7:7:21:268,21,0 1/1:0,5:5:15:190,15,0 1/1:0,7:7:21:258,21,0 0/0:5,0:5:0:0,0,49 1/1:0,12:12:36:447,36,0 1/1:0,8:8:24:279,24,0 0/0:4,0:4:0:0,0,73 1/1:0,16:16:48:589,48,0 0/1:8,13:21:99:408,0,236 1/1:0,12:12:36:434,36,0 1/1:0,12:12:36:433,36,0 0/0:9,0:9:0:0,0,121 0/1:3,5:8:87:165,0,87 0/0:6,0:6:15:0,15,225 1/1:0,6:6:18:229,18,0 1/1:0,9:9:27:336,27,0 1/1:0,6:6:18:209,18,0 0/1:6,6:12:99:192,0,207 1/1:0,19:19:57:690,57,0 1/1:0,14:14:42:517,42,0 0/1:22,12:34:99:309,0,738 0/1:6,5:11:99:143,0,173 0/0:4,0:4:0:0,0,88 0/1:5,7:12:99:165,0,145 1/1:0,7:7:21:247,21,0 1/1:0,4:4:12:144,12,0 0/1:1,7:8:17:250,0,17 0/0:3,0:3:0:0,0,43 ./.:0,0:0 1/1:0,16:16:48:585,48,0 0/1:9,14:23:99:452,0,243 ./.:4,0:4 0/0:11,0:11:30:0,30,450 0/1:1,7:8:12:225,0,12 0/1:3,5:8:86:168,0,86 0/0:6,0:6:15:0,15,225 ./.:4,0:4 1/1:0,9:9:27:301,27,0 0/0:14,0:14:39:0,39,585 0/0:6,0:6:15:0,15,225 0/1:6,5:11:99:155,0,196 0/0:15,0:15:33:0,33,495 0/1:5,4:9:99:119,0,140 1/1:0,13:13:39:476,39,0 1/1:0,6:6:18:211,18,0 0/1:5,11:16:99:356,0,148 0/1:6,14:20:99:399,0,161 1/1:0,25:25:75:914,75,0 0/1:10,9:19:99:282,0,297 0/1:9,6:15:99:161,0,298 1/1:1,35:36:72:1260,72,0 0/0:23,0:23:29:0,29,753 1/1:0,6:6:18:224,18,0 0/1:15,10:25:99:281,0,498 0/0:15,0:15:42:0,42,630 1/1:0,13:13:39:451,39,0 1/1:0,7:7:21:266,21,0 0/0:2,0:2:6:0,6,71 1/1:0,26:26:78:956,78,0 0/0:9,0:9:0:0,0,30 1/1:0,16:16:47:514,47,0 0/0:8,0:8:0:0,0,144 1/1:0,4:4:12:148,12,0 1/1:0,10:10:30:354,30,0 1/1:0,25:25:75:904,75,0 1/1:0,9:9:27:329,27,0 ./.:0,0:0 1/1:0,9:9:27:334,27,0 0/1:7,4:11:99:122,0,233 0/1:5,6:11:99:188,0,165 1/1:0,11:11:33:411,33,0 1/1:0,14:14:42:529,42,0 1/1:0,9:9:27:304,27,0 1 11846270 rs1057624 T C 1823.49 . AC=6;AF=0.031;AN=194;BaseQRankSum=1.16;ClippingRankSum=0.032;DB;DP=1556;FS=0.000;InbreedingCoeff=0.2068;MLEAC=6;MLEAF=0.031;MQ=58.95;MQRankSum=0.866;QD=16.00;ReadPosRankSum=-5.480e-01;SOR=0.841 GT:AD:DP:GQ:PL 0/0:18,0:18:45:0,45,675 0/1:9,17:26:99:568,0,260 0/0:30,0:30:64:0,64,990 0/0:18,0:18:45:0,45,675 0/0:16,0:16:39:0,39,585 0/0:30,0:30:81:0,81,1215 0/0:9,0:9:21:0,21,315 0/0:17,0:17:39:0,39,585 0/0:18,0:18:45:0,45,675 0/0:8,0:8:0:0,0,198 0/0:12,0:12:36:0,36,446 0/0:9,0:9:21:0,21,315 0/0:1,0:1:3:0,3,32 0/0:16,0:16:45:0,45,675 0/0:12,0:12:30:0,30,450 0/0:18,0:18:42:0,42,630 0/0:13,0:13:36:0,36,540 0/0:17,0:17:42:0,42,630 0/0:15,0:15:42:0,42,630 0/0:6,0:6:18:0,18,219 0/0:23,0:23:63:0,63,945 0/0:25,0:25:39:0,39,789 0/0:15,0:15:42:0,42,630 0/0:30,0:30:90:0,90,1056 0/0:2,0:2:3:0,3,45 0/0:25,0:25:63:0,63,945 0/0:20,0:20:51:0,51,765 0/0:10,0:10:27:0,27,405 0/0:6,0:6:18:0,18,219 0/0:8,0:8:24:0,24,279 0/0:8,0:8:24:0,24,271 0/0:9,0:9:24:0,24,360 0/0:11,0:11:30:0,30,450 ./.:4,0:4 0/0:18,0:18:48:0,48,720 0/0:35,0:35:65:0,65,1201 0/0:15,0:15:36:0,36,540 0/0:13,0:13:33:0,33,495 0/0:16,0:16:45:0,45,675 0/0:13,0:13:33:0,33,495 0/0:6,0:6:0:0,0,159 0/0:5,0:5:15:0,15,188 0/0:10,0:10:24:0,24,360 0/0:9,0:9:24:0,24,360 0/0:13,0:13:27:0,27,405 0/0:30,0:30:90:0,90,1106 0/0:18,0:18:48:0,48,720 0/1:15,21:36:99:673,0,443 0/0:15,0:15:45:0,45,553 0/0:7,0:7:21:0,21,243 0/0:19,0:19:42:0,42,630 0/0:8,0:8:18:0,18,270 0/0:10,0:10:24:0,24,360 0/0:15,0:15:33:0,33,495 0/0:2,0:2:6:0,6,70 ./.:0,0:0 0/0:18,0:18:48:0,48,720 0/0:27,0:27:57:0,57,855 0/0:11,0:11:30:0,30,450 0/0:14,0:14:36:0,36,540 0/0:20,0:20:57:0,57,855 0/0:9,0:9:24:0,24,360 0/0:12,0:12:36:0,36,426 0/0:3,0:3:9:0,9,113 0/0:14,0:14:39:0,39,585 0/0:13,0:13:30:0,30,450 0/0:8,0:8:21:0,21,315 0/0:12,0:12:33:0,33,495 0/0:12,0:12:30:0,30,450 0/0:12,0:12:36:0,36,412 0/0:21,0:21:60:0,60,808 0/0:9,0:9:27:0,27,308 0/0:28,0:28:72:0,72,1080 0/1:17,5:22:99:109,0,582 0/0:31,0:31:81:0,81,1215 0/1:12,12:24:99:352,0,376 0/0:18,0:18:48:0,48,720 0/0:38,0:38:99:0,105,1575 0/0:23,0:23:48:0,48,720 0/0:10,0:10:30:0,30,357 0/0:35,0:35:81:0,81,1215 0/0:25,0:25:60:0,60,900 0/0:16,0:16:48:0,48,595 0/0:12,0:12:30:0,30,450 0/0:6,0:6:18:0,18,224 0/0:36,0:36:99:0,99,1484 0/0:16,0:16:42:0,42,630 0/0:27,0:27:75:0,75,1105 1/1:0,6:6:18:236,18,0 0/0:4,0:4:12:0,12,151 0/0:13,0:13:39:0,39,492 0/0:26,0:26:72:0,72,1080 0/0:9,0:9:27:0,27,334 ./.:0,0:0 0/0:17,0:17:48:0,48,720 0/0:16,0:16:42:0,42,630 0/0:13,0:13:33:0,33,495 0/0:17,0:17:48:0,48,720 0/0:18,0:18:51:0,51,765 0/0:16,0:16:36:0,36,540 1 11846380 . T G 1030.98 . AC=11;AF=0.056;AN=198;BaseQRankSum=-4.511e+00;ClippingRankSum=-6.920e-01;DP=2838;FS=128.152;InbreedingCoeff=-0.2581;MLEAC=23;MLEAF=0.116;MQ=57.69;MQRankSum=-6.400e-02;QD=1.98;ReadPosRankSum=0.340;SOR=9.947 GT:AD:DP:GQ:PL 0/0:21,0:21:13:0,13,498 0/0:38,0:38:3:0,3,975 0/0:36,0:36:0:0,0,753 0/0:32,0:32:0:0,0,317 0/0:23,0:23:14:0,14,570 0/1:32,15:47:99:102,0,852 0/0:21,0:21:0:0,0,361 0/0:30,0:30:18:0,18,674 0/0:25,0:25:22:0,22,674 0/0:103,0:103:0:0,0,2206 0/0:24,0:24:0:0,0,283 0/0:12,0:12:6:0,6,300 0/0:2,0:2:0:0,0,28 0/0:23,0:23:22:0,22,569 0/1:12,6:18:27:27,0,367 0/0:15,0:15:27:0,27,399 0/0:25,0:25:48:0,48,743 0/0:28,0:28:0:0,0,598 0/1:22,22:44:99:143,0,448 0/0:14,0:14:0:0,0,271 0/0:35,0:35:3:0,3,773 0/0:45,0:45:0:0,0,935 0/0:16,0:16:5:0,5,425 0/1:59,33:92:97:97,0,1357 0/0:14,0:14:0:0,0,275 0/0:34,0:34:3:0,3,806 0/0:21,0:21:0:0,0,408 0/0:18,0:18:0:0,0,306 0/0:25,0:25:0:0,0,210 0/0:18,0:18:0:0,0,319 0/0:16,0:16:0:0,0,205 0/0:24,0:24:23:0,23,514 0/0:15,0:15:0:0,0,205 0/0:19,0:19:15:0,15,539 0/0:25,0:25:0:0,0,466 0/0:47,0:47:6:0,6,1134 0/0:22,0:22:24:0,24,539 0/0:14,0:14:0:0,0,273 0/0:23,0:23:0:0,0,459 0/0:23,0:23:0:0,0,382 0/0:10,0:10:0:0,0,166 0/0:16,0:16:0:0,0,189 0/0:22,0:22:0:0,0,447 0/0:20,0:20:42:0,42,555 0/0:22,0:22:39:0,39,620 0/0:42,0:42:0:0,0,899 0/0:30,0:30:0:0,0,582 0/0:59,0:59:54:0,54,1484 0/0:22,0:22:0:0,0,192 0/0:11,0:11:5:0,5,262 0/0:15,0:15:0:0,0,156 0/1:13,9:22:56:56,0,318 0/0:20,0:20:0:0,0,251 0/0:19,0:19:0:0,0,255 0/0:26,0:26:59:0,59,805 0/0:4,0:4:0:0,0,16 0/1:34,15:49:98:98,0,918 0/0:56,0:56:0:0,0,1357 0/0:20,0:20:12:0,12,533 0/0:22,0:22:0:0,0,450 0/0:35,0:35:5:0,5,766 0/0:16,0:16:0:0,0,231 0/0:29,0:29:0:0,0,467 0/0:9,0:9:15:0,15,213 0/0:21,0:21:0:0,0,272 0/0:25,0:25:40:0,40,757 0/0:24,0:24:24:0,24,588 0/0:18,0:18:0:0,0,176 0/0:23,0:23:0:0,0,386 0/0:20,0:20:0:0,0,369 0/0:25,0:25:0:0,0,497 0/0:15,0:15:0:0,0,158 0/0:45,0:45:46:0,46,1087 0/0:37,0:37:2:0,2,870 0/1:24,18:42:99:118,0,600 0/0:46,0:46:0:0,0,930 0/0:26,0:26:12:0,12,646 0/1:51,34:85:99:192,0,1272 0/0:34,0:34:0:0,0,610 0/0:18,0:18:2:0,2,428 0/1:42,34:76:99:176,0,1040 0/0:28,0:28:0:0,0,602 0/0:25,0:25:0:0,0,493 0/0:19,0:19:0:0,0,360 0/0:3,0:3:0:0,0,46 0/0:93,0:93:21:0,21,2271 0/0:42,0:42:11:0,11,1014 0/0:36,0:36:0:0,0,628 0/0:6,0:6:0:0,0,88 0/0:12,0:12:0:0,0,254 0/0:29,0:29:0:0,0,649 0/0:55,0:55:0:0,0,1175 0/1:5,10:15:84:84,0,84 ./.:0,0:0 0/0:21,0:21:4:0,4,529 0/0:27,0:27:23:0,23,620 0/0:25,0:25:9:0,9,620 0/0:23,0:23:0:0,0,539 0/1:18,13:31:60:60,0,387 0/0:37,0:37:19:0,19,770 1 11846447 rs4845884 G A 189839.72 . AC=194;AF=1.00;AN=194;BaseQRankSum=1.70;ClippingRankSum=-1.180e-01;DB;DP=5213;FS=0.000;InbreedingCoeff=-0.0000;MLEAC=194;MLEAF=1.00;MQ=57.50;MQRankSum=0.390;QD=29.09;ReadPosRankSum=0.043;SOR=1.073 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1684,138,0 1/1:0,94:94:99:3486,282,0 1/1:0,56:56:99:2035,168,0 1/1:0,60:60:99:2210,181,0 1/1:0,54:54:99:2068,162,0 1/1:0,81:81:99:3030,243,0 1/1:0,38:38:99:1438,114,0 1/1:0,41:41:99:1584,123,0 1/1:0,40:40:99:1463,120,0 1/1:0,105:105:99:3904,316,0 1/1:0,32:32:96:1228,96,0 1/1:0,35:35:99:1361,105,0 ./.:3,0:3 1/1:0,52:52:99:1947,156,0 1/1:0,28:28:84:1029,84,0 1/1:0,40:40:99:1488,120,0 1/1:0,33:33:99:1265,99,0 1/1:0,31:31:93:1172,93,0 1/1:0,66:66:99:2433,198,0 1/1:0,38:38:99:1254,113,0 1/1:0,47:47:99:1782,141,0 1/1:0,68:68:99:2471,205,0 1/1:0,41:41:99:1528,123,0 1/1:0,107:107:99:4075,322,0 1/1:0,28:28:84:1019,84,0 1/1:0,77:77:99:2550,231,0 1/1:0,42:42:99:1560,126,0 1/1:0,50:50:99:1862,150,0 1/1:0,27:27:81:991,81,0 1/1:0,34:34:99:1285,102,0 1/1:0,29:29:87:1089,87,0 1/1:0,27:27:81:1031,81,0 1/1:0,33:33:99:1215,99,0 1/1:0,19:19:57:673,57,0 1/1:0,62:62:99:2310,187,0 1/1:0,89:89:99:3256,267,0 1/1:0,48:48:99:1780,144,0 1/1:0,41:41:99:1540,123,0 1/1:0,51:51:99:1945,153,0 1/1:0,40:40:99:1519,120,0 1/1:0,29:29:87:1087,87,0 1/1:0,19:19:57:697,57,0 1/1:0,49:49:99:1818,147,0 1/1:0,18:18:54:685,54,0 1/1:0,40:40:99:1523,120,0 1/1:0,74:74:99:2750,223,0 1/1:0,62:62:99:2331,186,0 1/1:0,105:105:99:3791,315,0 1/1:0,51:51:99:1856,153,0 1/1:0,30:30:90:1124,90,0 1/1:0,34:34:99:1251,102,0 1/1:0,54:54:99:2061,163,0 1/1:0,44:44:99:1666,132,0 1/1:0,39:39:99:1444,117,0 1/1:0,56:56:99:2183,169,0 ./.:0,0:0 1/1:0,77:77:99:2734,230,0 1/1:0,105:105:99:3806,315,0 1/1:0,26:26:78:937,78,0 1/1:0,44:44:99:1673,132,0 1/1:0,71:71:99:2658,214,0 1/1:0,38:38:99:1445,114,0 1/1:0,45:45:99:1693,135,0 1/1:0,28:28:84:1072,84,0 1/1:0,27:27:81:954,81,0 1/1:0,37:37:99:1368,111,0 1/1:0,44:44:99:1659,132,0 1/1:1,39:40:92:1394,92,0 1/1:0,46:46:99:1665,138,0 1/1:0,34:34:99:1252,102,0 1/1:0,44:44:99:1680,132,0 1/1:0,28:28:84:1059,84,0 1/1:0,71:71:99:2545,213,0 1/1:0,94:94:99:3482,281,0 1/1:0,90:90:99:3205,269,0 1/1:1,79:80:99:2892,199,0 1/1:0,36:36:99:1396,108,0 1/1:1,190:191:99:7119,564,0 1/1:0,73:73:99:2638,219,0 1/1:0,37:37:99:1348,111,0 1/1:1,93:94:99:3366,273,0 1/1:0,74:74:99:2734,222,0 1/1:0,59:59:99:2254,178,0 1/1:0,53:53:99:2032,160,0 1/1:0,14:14:42:547,42,0 1/1:0,162:162:99:5939,486,0 1/1:0,81:81:99:2989,243,0 1/1:0,70:70:99:2580,210,0 1/1:0,21:21:63:793,63,0 1/1:0,27:27:81:999,81,0 1/1:0,37:37:99:1433,111,0 1/1:0,93:93:99:3442,280,0 1/1:0,37:37:99:1412,111,0 ./.:1,0:1 1/1:0,41:41:99:1533,123,0 1/1:0,58:58:99:2162,174,0 1/1:0,34:34:99:1306,102,0 1/1:0,38:38:99:1416,114,0 1/1:0,40:40:99:1463,119,0 1/1:0,64:64:99:1961,191,0 1 11846637 . C T 111.17 . AC=1;AF=5.208e-03;AN=192;BaseQRankSum=0.922;ClippingRankSum=0.198;DP=1098;FS=0.000;InbreedingCoeff=-0.0165;MLEAC=1;MLEAF=5.208e-03;MQ=42.22;MQRankSum=-1.495e+00;QD=15.88;ReadPosRankSum=0.922;SOR=1.609 GT:AD:DP:GQ:PL 0/0:8,0:8:21:0,21,315 0/0:22,0:22:60:0,60,900 0/0:17,0:17:39:0,39,585 0/0:11,0:11:30:0,30,450 0/0:15,0:15:30:0,30,450 0/0:23,0:23:51:0,51,765 0/0:7,0:7:15:0,15,225 0/0:5,0:5:12:0,12,180 0/0:3,0:3:6:0,6,90 0/0:3,0:3:9:0,9,99 0/0:19,0:19:42:0,42,630 0/0:10,0:10:0:0,0,296 ./.:0,0:0 0/0:16,0:16:36:0,36,540 0/0:4,0:4:12:0,12,149 0/0:6,0:6:12:0,12,180 0/0:7,0:7:21:0,21,263 0/0:6,0:6:18:0,18,204 0/0:16,0:16:42:0,42,630 0/0:6,0:6:15:0,15,225 0/0:11,0:11:24:0,24,360 0/0:12,0:12:24:0,24,360 0/0:6,0:6:18:0,18,187 0/0:30,0:30:72:0,72,1080 0/0:6,0:6:9:0,9,135 0/0:18,0:18:42:0,42,630 0/0:14,0:14:30:0,30,450 ./.:2,0:2 0/0:4,0:4:12:0,12,151 0/0:13,0:13:39:0,39,452 0/0:4,0:4:12:0,12,141 0/0:7,0:7:21:0,21,263 0/0:8,0:8:15:0,15,225 0/0:6,0:6:15:0,15,225 0/0:11,0:11:27:0,27,405 0/0:19,0:19:45:0,45,675 0/0:9,0:9:24:0,24,360 0/0:12,0:12:30:0,30,450 0/0:11,0:11:30:0,30,450 0/0:11,0:11:15:0,15,225 0/0:10,0:10:27:0,27,405 0/0:12,0:12:24:0,24,360 0/0:13,0:13:30:0,30,450 0/0:6,0:6:15:0,15,225 0/0:9,0:9:24:0,24,360 0/0:7,0:7:21:0,21,260 0/0:9,0:9:27:0,27,311 0/0:17,0:17:33:0,33,495 0/0:14,0:14:39:0,39,585 0/0:8,0:8:18:0,18,270 0/0:5,0:5:12:0,12,180 0/0:10,0:10:24:0,24,360 0/0:11,0:11:21:0,21,315 0/0:7,0:7:21:0,21,270 0/0:7,0:7:21:0,21,258 ./.:0,0:0 0/0:12,0:12:33:0,33,495 0/0:21,0:21:57:0,57,855 0/0:4,0:4:9:0,9,135 0/0:13,0:13:36:0,36,540 0/0:15,0:15:45:0,45,501 0/0:7,0:7:15:0,15,225 0/0:9,0:9:27:0,27,323 0/0:4,0:4:12:0,12,141 0/0:11,0:11:33:0,33,325 0/0:8,0:8:18:0,18,270 0/0:12,0:12:24:0,24,360 0/0:9,0:9:21:0,21,315 0/0:10,0:10:17:0,17,289 0/0:8,0:8:24:0,24,282 0/0:14,0:14:36:0,36,540 0/0:11,0:11:27:0,27,405 0/0:18,0:18:33:0,33,495 0/0:16,0:16:36:0,36,540 0/0:17,0:17:39:0,39,585 0/0:10,0:10:27:0,27,405 0/0:7,0:7:21:0,21,267 0/0:40,0:40:90:0,90,1350 0/0:17,0:17:39:0,39,585 0/0:3,0:3:9:0,9,100 0/0:23,0:23:60:0,60,900 0/0:15,0:15:42:0,42,630 0/0:17,0:17:39:0,39,585 0/0:8,0:8:24:0,24,273 0/0:4,0:4:9:0,9,135 0/0:38,0:38:93:0,93,1395 0/0:22,0:22:51:0,51,765 0/0:11,0:11:27:0,27,405 0/0:5,0:5:15:0,15,192 0/0:5,0:5:12:0,12,180 0/0:12,0:12:36:0,36,452 0/0:25,0:25:57:0,57,855 0/0:7,0:7:21:0,21,228 ./.:0,0:0 0/0:6,0:6:18:0,18,207 0/0:14,0:14:36:0,36,540 0/1:2,5:7:28:153,0,28 0/0:7,0:7:18:0,18,270 0/0:8,0:8:21:0,21,315 0/0:4,0:4:12:0,12,117 1 11846659 . ATTTTTTTT ATTT,A,ATTTT 1698.27 . AC=1,4,1;AF=6.024e-03,0.024,6.024e-03;AN=166;BaseQRankSum=0.365;ClippingRankSum=0.00;DP=1025;FS=30.628;InbreedingCoeff=0.1957;MLEAC=1,5,1;MLEAF=6.024e-03,0.030,6.024e-03;MQ=40.81;MQRankSum=0.550;QD=24.97;ReadPosRankSum=0.937;SOR=0.576 GT:AD:DP:GQ:PL ./.:6,0,0,0:6 0/0:18,0,0,0:18:30:0,30,450,30,450,450,30,450,450,450 0/0:16,0,0,0:16:14:0,14,449,14,449,449,14,449,449,449 0/0:13,0,0,0:13:0:0,0,164,0,164,164,0,164,164,164 0/0:9,0,0,0:9:0:0,0,248,0,248,248,0,248,248,248 ./.:4,0,0,0:4 0/0:8,0,0,0:8:0:0,0,200,0,200,200,0,200,200,200 0/0:4,0,0,0:4:0:0,0,51,0,51,51,0,51,51,51 0/0:9,0,0,0:9:0:0,0,169,0,169,169,0,169,169,169 ./.:2,0,0,0:2 0/0:11,0,0,0:11:12:0,12,180,12,180,180,12,180,180,180 0/0:7,0,0,0:7:12:0,12,180,12,180,180,12,180,180,180 ./.:0,0,0,0:0 0/0:10,0,0,0:10:0:0,0,144,0,144,144,0,144,144,144 0/0:8,0,0,0:8:0:0,0,205,0,205,205,0,205,205,205 0/0:3,0,0,0:3:9:0,9,105,9,105,105,9,105,105,105 0/0:5,0,0,0:5:0:0,0,13,0,13,13,0,13,13,13 0/0:8,0,0,0:8:9:0,9,135,9,135,135,9,135,135,135 0/1:3,4,0,0:7:50:160,0,50,169,62,231,169,62,231,231 0/0:8,0,0,0:8:0:0,0,158,0,158,158,0,158,158,158 0/0:10,0,0,0:10:0:0,0,193,0,193,193,0,193,193,193 0/0:12,0,0,0:12:0:0,0,143,0,143,143,0,143,143,143 0/0:11,0,0,0:11:0:0,0,153,0,153,153,0,153,153,153 0/0:27,0,0,0:27:0:0,0,737,0,737,737,0,737,737,737 ./.:5,0,0,0:5 ./.:5,0,0,0:5 0/0:7,0,0,0:7:0:0,0,122,0,122,122,0,122,122,122 ./.:2,0,0,0:2 ./.:6,0,0,0:6 0/0:13,0,0,0:13:0:0,0,190,0,190,190,0,190,190,190 0/0:6,0,0,0:6:0:0,0,143,0,143,143,0,143,143,143 0/0:9,0,0,0:9:0:0,0,28,0,28,28,0,28,28,28 ./.:8,0,0,0:8 0/0:7,0,0,0:7:15:0,15,225,15,225,225,15,225,225,225 0/0:10,0,0,0:10:0:0,0,189,0,189,189,0,189,189,189 0/0:22,0,0,0:22:0:0,0,368,0,368,368,0,368,368,368 0/0:13,0,0,0:13:7:0,7,399,7,399,399,7,399,399,399 0/0:17,0,0,0:17:27:0,27,405,27,405,405,27,405,405,405 0/0:8,0,0,0:8:0:0,0,167,0,167,167,0,167,167,167 0/0:9,0,0,0:9:0:0,0,156,0,156,156,0,156,156,156 0/0:8,0,0,0:8:1:0,1,238,1,238,238,1,238,238,238 0/0:4,0,0,0:4:3:0,3,45,3,45,45,3,45,45,45 0/0:10,0,0,0:10:2:0,2,290,2,290,290,2,290,290,290 0/0:8,0,0,0:8:18:0,18,270,18,270,270,18,270,270,270 0/0:6,0,0,0:6:12:0,12,180,12,180,180,12,180,180,180 0/0:11,0,0,0:11:18:0,18,270,18,270,270,18,270,270,270 0/0:13,0,0,0:13:5:0,5,411,5,411,411,5,411,411,411 ./.:18,0,0,0:18 0/0:8,0,0,0:8:0:0,0,5,0,5,5,0,5,5,5 0/0:7,0,0,0:7:0:0,0,165,0,165,165,0,165,165,165 0/0:4,0,0,0:4:6:0,6,90,6,90,90,6,90,90,90 0/0:13,0,0,0:13:0:0,0,185,0,185,185,0,185,185,185 0/0:6,0,0,0:6:0:0,0,120,0,120,120,0,120,120,120 0/0:7,0,0,0:7:0:0,0,34,0,34,34,0,34,34,34 0/2:3,0,4,0:7:99:159,168,297,0,129,117,168,297,129,297 ./.:0,0,0,0:0 ./.:15,0,0,0:15 0/0:20,0,0,0:20:0:0,0,409,0,409,409,0,409,409,409 0/0:6,0,0,0:6:9:0,9,135,9,135,135,9,135,135,135 0/0:18,0,0,0:18:0:0,0,478,0,478,478,0,478,478,478 0/0:20,0,0,0:20:24:0,24,605,24,605,605,24,605,605,605 0/0:5,0,0,0:5:0:0,0,30,0,30,30,0,30,30,30 0/0:10,0,0,0:10:18:0,18,270,18,270,270,18,270,270,270 0/0:8,0,0,0:8:0:0,0,219,0,219,219,0,219,219,219 0/0:12,0,0,0:12:0:0,0,122,0,122,122,0,122,122,122 0/0:5,0,0,0:5:12:0,12,180,12,180,180,12,180,180,180 0/0:9,0,0,0:9:0:0,0,153,0,153,153,0,153,153,153 0/0:6,0,0,0:6:0:0,0,70,0,70,70,0,70,70,70 0/0:9,0,0,0:9:0:0,0,84,0,84,84,0,84,84,84 0/0:7,0,0,0:7:15:0,15,225,15,225,225,15,225,225,225 0/0:14,0,0,0:14:11:0,11,457,11,457,457,11,457,457,457 0/0:16,0,0,0:16:17:0,17,503,17,503,503,17,503,503,503 0/2:4,0,6,0:10:99:224,236,426,0,189,171,236,426,189,426 0/0:13,0,0,0:13:2:0,2,378,2,378,378,2,378,378,378 ./.:6,0,0,0:6 0/0:10,0,0,0:10:0:0,0,269,0,269,269,0,269,269,269 0/0:6,0,0,0:6:0:0,0,148,0,148,148,0,148,148,148 0/0:36,0,0,0:36:0:0,0,24,0,24,24,0,24,24,24 0/0:26,0,0,0:26:18:0,18,774,18,774,774,18,774,774,774 0/0:13,0,0,0:13:0:0,0,197,0,197,197,0,197,197,197 0/2:7,0,9,0:16:99:350,371,674,0,303,275,371,674,303,674 0/0:15,0,0,0:15:15:0,15,225,15,225,225,15,225,225,225 0/0:14,0,0,0:14:9:0,9,442,9,442,442,9,442,442,442 0/0:8,0,0,0:8:0:0,0,78,0,78,78,0,78,78,78 0/0:2,0,0,0:2:3:0,3,45,3,45,45,3,45,45,45 0/0:31,0,0,0:31:0:0,0,410,0,410,410,0,410,410,410 0/2:6,0,11,0:17:99:419,437,737,0,300,266,437,737,300,737 0/0:7,0,0,0:7:3:0,3,45,3,45,45,3,45,45,45 ./.:5,0,0,0:5 0/0:6,0,0,0:6:0:0,0,147,0,147,147,0,147,147,147 ./.:5,0,0,0:5 0/3:3,0,0,8:11:56:290,299,380,299,380,380,0,81,81,56 0/0:8,0,0,0:8:0:0,0,181,0,181,181,0,181,181,181 ./.:0,0,0,0:0 0/0:7,0,0,0:7:15:0,15,225,15,225,225,15,225,225,225 0/0:13,0,0,0:13:0:0,0,191,0,191,191,0,191,191,191 0/0:7,0,0,0:7:6:0,6,90,6,90,90,6,90,90,90 ./.:3,0,0,0:3 0/0:9,0,0,0:9:0:0,0,61,0,61,61,0,61,61,61 0/0:2,0,0,0:2:3:0,3,45,3,45,45,3,45,45,45 1 11846742 rs2184227 C T 6755.81 . AC=21;AF=0.107;AN=196;BaseQRankSum=-8.940e-01;ClippingRankSum=-1.960e-01;DB;DP=2374;FS=6.021;InbreedingCoeff=0.0664;MLEAC=21;MLEAF=0.107;MQ=58.89;MQRankSum=0.019;QD=13.70;ReadPosRankSum=0.057;SOR=2.119 GT:AD:DP:GQ:PL 0/0:21,0:21:54:0,54,810 0/0:35,0:35:70:0,70,1080 0/0:24,0:24:60:0,60,900 0/0:27,0:27:72:0,72,1080 0/1:6,10:16:99:339,0,175 0/0:36,0:36:81:0,81,1215 0/0:32,0:32:84:0,84,1217 0/0:22,0:22:60:0,60,900 0/1:15,9:24:99:256,0,487 0/0:27,0:27:75:0,75,1125 0/0:15,0:15:42:0,42,630 0/0:14,0:14:42:0,42,522 ./.:0,0:0 0/0:21,0:21:45:0,45,675 0/0:19,0:19:0:0,0,434 1/1:0,14:14:42:526,42,0 0/0:21,0:21:54:0,54,810 0/0:26,0:26:0:0,0,695 0/0:33,0:33:78:0,78,1170 0/0:14,0:14:36:0,36,540 0/0:23,0:23:60:0,60,900 0/0:40,0:40:99:0,102,1530 0/0:21,0:21:48:0,48,720 0/0:45,0:45:99:0,99,1485 0/0:8,0:8:24:0,24,296 0/1:31,16:47:99:354,0,923 0/0:16,0:16:33:0,33,495 0/0:21,0:21:48:0,48,750 0/0:18,0:18:45:0,45,675 0/0:16,0:16:18:0,18,528 0/0:10,0:10:27:0,27,405 0/0:28,0:28:72:0,72,1080 0/0:30,0:30:69:0,69,1035 0/0:12,0:12:30:0,30,450 0/1:15,9:24:99:270,0,509 0/0:43,0:43:95:0,95,1452 0/1:13,8:21:99:252,0,431 0/1:13,5:18:99:141,0,424 0/0:18,0:18:16:0,16,630 0/0:15,0:15:42:0,42,630 0/0:13,0:13:27:0,27,405 0/0:9,0:9:21:0,21,315 0/0:20,0:20:51:0,51,765 0/1:11,8:19:99:234,0,372 0/0:16,0:16:36:0,36,540 0/1:21,20:41:99:585,0,637 0/0:27,0:27:63:0,63,945 0/0:41,0:41:99:0,99,1485 0/0:24,0:24:60:0,60,900 0/0:11,0:11:21:0,21,315 0/0:21,0:21:48:0,48,720 0/1:13,4:17:99:107,0,451 0/1:18,8:26:99:234,0,577 0/0:15,0:15:39:0,39,585 0/0:24,0:24:54:0,54,810 0/0:2,0:2:6:0,6,62 0/1:18,27:45:99:806,0,559 0/0:43,0:43:99:0,102,1530 0/0:20,0:20:47:0,47,662 0/0:16,0:16:45:0,45,675 0/1:19,15:34:99:456,0,585 0/0:26,0:26:60:0,60,900 0/0:19,0:19:45:0,45,675 0/0:16,0:16:39:0,39,585 0/0:16,0:16:48:0,48,593 0/0:19,0:19:57:0,57,709 0/0:11,0:11:27:0,27,405 0/0:26,0:26:60:0,60,900 0/0:12,0:12:27:0,27,405 0/0:12,0:12:36:0,36,445 0/1:16,16:32:99:479,0,510 1/1:0,17:17:51:635,51,0 0/0:31,0:31:72:0,72,1080 0/0:41,0:41:51:0,51,1400 0/0:27,0:27:48:0,48,897 0/0:32,0:32:0:0,0,473 0/0:41,0:41:93:0,93,1395 0/0:46,0:46:99:0,111,1665 0/0:24,0:24:72:0,72,922 0/0:16,0:16:35:0,35,551 0/0:42,0:42:93:0,93,1395 0/0:24,0:24:57:0,57,855 0/0:28,0:28:60:0,60,900 0/0:23,0:23:57:0,57,855 0/0:6,0:6:12:0,12,180 0/0:43,0:43:99:0,102,1530 0/0:35,0:35:99:0,101,1273 0/0:34,0:34:84:0,84,1260 0/0:14,0:14:30:0,30,450 0/1:15,10:25:99:290,0,470 0/1:9,7:16:99:213,0,304 0/0:41,0:41:99:0,99,1485 0/0:21,0:21:60:0,60,779 ./.:0,0:0 0/1:12,20:32:99:641,0,365 0/1:17,8:25:99:185,0,535 0/0:19,0:19:51:0,51,765 0/0:17,0:17:39:0,39,585 0/0:36,0:36:96:0,96,1440 0/0:27,0:27:63:0,63,892 1 11847167 rs182398073 C T 345.82 . AC=1;AF=5.000e-03;AN=200;BaseQRankSum=-7.580e-01;ClippingRankSum=-2.970e-01;DB;DP=1821;FS=15.233;InbreedingCoeff=-0.0098;MLEAC=1;MLEAF=5.000e-03;MQ=60.00;MQRankSum=-8.900e-01;QD=15.72;ReadPosRankSum=-7.580e-01;SOR=1.850 GT:AD:DP:GQ:PL 0/0:12,0:12:30:0,30,450 0/0:24,0:24:60:0,60,900 0/0:20,0:20:45:0,45,675 0/0:18,0:18:45:0,45,675 0/0:28,0:28:75:0,75,1125 0/0:30,0:30:60:0,60,900 0/0:10,0:10:30:0,30,359 0/0:18,0:18:30:0,30,450 0/0:15,0:15:36:0,36,540 0/0:14,0:14:30:0,30,450 0/0:13,0:13:33:0,33,495 0/0:12,0:12:30:0,30,450 0/0:2,0:2:6:0,6,75 0/0:17,0:17:45:0,45,675 0/0:12,0:12:17:0,17,376 0/0:17,0:17:48:0,48,720 0/0:16,0:16:33:0,33,495 0/0:20,0:20:42:0,42,630 0/0:23,0:23:48:0,48,720 0/0:12,0:12:27:0,27,405 0/0:21,0:21:45:0,45,675 0/0:30,0:30:60:0,60,900 0/0:14,0:14:30:0,30,450 0/0:45,0:45:99:0,99,1485 0/0:14,0:14:33:0,33,495 0/0:39,0:39:85:0,85,1221 0/0:19,0:19:42:0,42,630 0/0:17,0:17:45:0,45,675 0/0:9,0:9:21:0,21,315 0/0:12,0:12:27:0,27,405 0/0:17,0:17:36:0,36,540 0/0:18,0:18:33:0,33,495 0/0:25,0:25:51:0,51,765 0/0:5,0:5:15:0,15,177 0/0:24,0:24:45:0,45,675 0/0:36,0:36:69:0,69,1191 0/0:17,0:17:45:0,45,675 0/0:15,0:15:36:0,36,540 0/0:11,0:11:30:0,30,450 0/1:10,12:22:99:388,0,290 0/0:9,0:9:15:0,15,225 0/0:9,0:9:21:0,21,315 0/0:11,0:11:24:0,24,360 0/0:12,0:12:20:0,20,376 0/0:7,0:7:18:0,18,270 0/0:27,0:27:60:0,60,900 0/0:25,0:25:57:0,57,855 0/0:35,0:35:75:0,75,1125 0/0:25,0:25:63:0,63,945 0/0:13,0:13:36:0,36,540 0/0:10,0:10:21:0,21,315 0/0:14,0:14:39:0,39,585 0/0:11,0:11:27:0,27,405 0/0:21,0:21:45:0,45,675 0/0:17,0:17:33:0,33,495 0/0:4,0:4:12:0,12,138 0/0:41,0:41:90:0,90,1350 0/0:37,0:37:90:0,90,1350 0/0:13,0:13:27:0,27,405 0/0:11,0:11:24:0,24,360 0/0:23,0:23:51:0,51,765 0/0:12,0:12:30:0,30,450 0/0:12,0:12:30:0,30,450 0/0:9,0:9:21:0,21,315 0/0:12,0:12:18:0,18,270 0/0:15,0:15:36:0,36,540 0/0:12,0:12:30:0,30,450 0/0:15,0:15:39:0,39,585 0/0:11,0:11:24:0,24,360 0/0:12,0:12:27:0,27,405 0/0:18,0:18:51:0,51,765 0/0:15,0:15:39:0,39,585 0/0:22,0:22:54:0,54,810 0/0:26,0:26:60:0,60,900 0/0:14,0:14:26:0,26,446 0/0:26,0:26:60:0,60,900 0/0:12,0:12:33:0,33,495 0/0:46,0:46:99:0,111,1665 0/0:18,0:18:45:0,45,675 0/0:16,0:16:36:0,36,540 0/0:34,0:34:84:0,84,1260 0/0:27,0:27:46:0,46,893 0/0:19,0:19:42:0,42,630 0/0:21,0:21:48:0,48,720 0/0:2,0:2:6:0,6,66 0/0:43,0:43:99:0,102,1530 0/0:23,0:23:54:0,54,810 0/0:23,0:23:51:0,51,765 0/0:11,0:11:24:0,24,360 0/0:8,0:8:21:0,21,315 0/0:17,0:17:51:0,51,620 0/0:39,0:39:90:0,90,1350 0/0:10,0:10:24:0,24,360 0/0:2,0:2:6:0,6,72 0/0:15,0:15:33:0,33,495 0/0:28,0:28:71:0,71,975 0/0:13,0:13:33:0,33,495 0/0:14,0:14:24:0,24,360 0/0:17,0:17:30:0,30,450 0/0:14,0:14:11:0,11,386 1 11847334 rs70983598 G GGAA 45402.56 . AC=114;AF=0.576;AN=198;BaseQRankSum=0.036;ClippingRankSum=0.185;DB;DP=1957;FS=1.214;InbreedingCoeff=-0.0430;MLEAC=119;MLEAF=0.601;MQ=50.99;MQRankSum=-1.110e+00;QD=31.20;ReadPosRankSum=0.143;SOR=0.591 GT:AD:DP:GQ:PGT:PID:PL 0/1:8,6:14:99:.:.:228,0,379 0/1:10,15:25:99:.:.:642,0,413 0/1:6,7:13:99:.:.:275,0,278 1/1:0,20:20:63:.:.:938,63,0 0/1:8,12:20:99:.:.:554,0,356 1/1:0,16:16:48:.:.:706,48,0 0/1:5,3:8:99:.:.:153,0,237 1/1:0,14:14:42:.:.:618,42,0 0/1:11,7:18:99:.:.:261,0,452 0/0:20,0:20:36:.:.:0,36,540 0/1:5,5:10:99:.:.:230,0,196 0/1:7,8:15:99:.:.:315,0,324 0/1:10,5:15:99:.:.:180,0,482 1/1:0,15:15:45:.:.:674,45,0 0/1:6,5:11:99:.:.:192,0,269 0/0:10,0:10:24:.:.:0,24,360 0/1:6,13:19:99:.:.:612,0,253 0/0:18,0:18:36:.:.:0,36,540 1/1:0,14:14:48:.:.:715,48,0 1/1:0,29:29:90:.:.:1345,90,0 1/1:0,14:14:42:.:.:618,42,0 0/1:15,12:27:99:.:.:459,0,690 1/1:0,19:19:60:.:.:878,60,0 1/1:0,32:32:99:.:.:1637,111,0 1/1:0,12:12:39:.:.:571,39,0 0/1:23,17:40:99:.:.:633,0,1018 0/1:14,5:19:99:.:.:168,0,682 1/1:0,11:11:39:.:.:575,39,0 1/1:0,11:11:36:.:.:540,36,0 1/1:0,8:8:27:.:.:392,27,0 0/1:3,9:12:99:.:.:360,0,122 1/1:0,17:17:54:.:.:810,54,0 1/1:0,6:6:18:.:.:270,18,0 0/0:7,0:7:0:.:.:0,0,95 0/1:5,12:17:99:.:.:489,0,213 0/1:16,16:32:99:.:.:749,0,721 0/1:7,12:19:99:.:.:483,0,312 0/1:8,5:13:99:.:.:186,0,342 0/1:5,6:11:99:.:.:237,0,231 0/1:8,11:19:99:.:.:470,0,348 0/0:18,0:18:48:.:.:0,48,720 1/1:0,7:7:21:.:.:315,21,0 1/1:0,16:16:48:.:.:720,48,0 1/1:0,7:7:21:.:.:306,21,0 0/0:9,0:9:0:.:.:0,0,185 0/1:17,9:26:99:.:.:314,0,800 1/1:0,34:34:99:.:.:1603,108,0 0/1:14,14:28:99:.:.:573,0,650 0/1:8,12:20:99:.:.:515,0,358 0/1:6,3:9:99:.:.:150,0,287 0/1:8,8:16:99:.:.:348,0,371 0/1:7,6:13:99:.:.:231,0,279 0/1:6,6:12:99:.:.:223,0,263 0/1:4,11:15:99:.:.:439,0,166 0/1:8,13:21:99:.:.:522,0,359 0/0:8,0:8:0:.:.:0,0,208 0/1:20,16:36:99:0|1:11847334_G_GGAA:737,0,770 1/1:2,33:35:9:.:.:1464,9,0 0/1:1,11:12:14:.:.:501,0,14 0/0:11,0:11:0:.:.:0,0,318 0/1:12,14:26:99:.:.:720,0,524 0/1:9,11:20:99:.:.:435,0,376 0/0:18,0:18:36:.:.:0,36,540 1/1:0,8:8:27:.:.:405,27,0 1/1:0,12:12:45:.:.:659,45,0 0/0:26,0:26:48:.:.:0,48,720 0/0:22,0:22:51:.:.:0,51,765 0/0:11,0:11:0:.:.:0,0,173 0/0:18,0:18:39:.:.:0,39,542 ./.:5,0:5 0/1:18,13:31:99:.:.:470,0,817 0/1:5,6:11:99:.:.:279,0,205 0/1:18,7:25:99:.:.:281,0,853 0/1:17,13:30:99:.:.:494,0,735 1/1:0,16:16:51:.:.:754,51,0 0/0:19,0:19:42:.:.:0,42,630 0/1:4,4:8:99:.:.:156,0,187 1/1:2,47:49:69:.:.:2086,69,0 0/0:29,0:29:54:.:.:0,54,810 1/1:0,16:16:51:.:.:756,51,0 0/1:15,17:32:99:.:.:710,0,671 0/0:25,0:25:36:.:.:0,36,828 1/1:0,18:18:60:.:.:900,60,0 1/1:0,15:15:48:.:.:700,48,0 0/0:5,0:5:0:.:.:0,0,98 1/1:2,45:47:42:.:.:1975,42,0 0/1:7,8:15:99:.:.:314,0,304 1/1:1,16:17:4:.:.:741,4,0 0/1:1,6:7:32:.:.:234,0,32 0/1:8,4:12:99:.:.:144,0,348 0/1:13,8:21:99:.:.:287,0,603 1/1:0,27:27:87:.:.:1290,87,0 1/1:0,16:16:54:.:.:788,54,0 0/0:8,0:8:0:.:.:0,0,119 0/1:8,5:13:99:.:.:301,0,319 0/0:33,0:33:81:.:.:0,81,1215 0/1:2,5:7:85:.:.:204,0,85 1/1:0,10:10:30:.:.:440,30,0 1/1:0,12:12:39:.:.:585,39,0 1/1:0,12:12:39:.:.:584,39,0 1 11847335 rs183631107 G C 579.06 . AC=1;AF=8.065e-03;AN=124;BaseQRankSum=-1.285e+00;ClippingRankSum=-4.100e-02;DB;DP=2206;FS=9.548;InbreedingCoeff=-0.2363;MLEAC=4;MLEAF=0.032;MQ=53.24;MQRankSum=1.83;QD=14.48;ReadPosRankSum=-1.177e+00;SOR=1.624 GT:AD:DP:GQ:PGT:PID:PL 0/0:18,0:18:0:.:.:0,0,169 0/0:30,0:30:0:.:.:0,0,204 0/0:16,0:16:0:.:.:0,0,273 ./.:25,0:25 0/0:23,0:23:0:.:.:0,0,128 ./.:21,0:21 0/0:12,0:12:0:.:.:0,0,124 ./.:16,0:16 0/0:20,0:20:0:.:.:0,0,337 0/0:22,0:22:39:.:.:0,39,585 0/0:17,0:17:0:.:.:0,0,258 0/0:17,0:17:0:.:.:0,0,78 0/0:15,0:15:0:.:.:0,0,162 ./.:20,0:20 0/0:16,0:16:0:.:.:0,0,175 0/0:10,0:10:24:.:.:0,24,360 0/0:27,0:27:0:.:.:0,0,73 0/0:19,0:19:39:.:.:0,39,585 ./.:24,0:24 ./.:35,0:35 0/0:23,0:23:0:.:.:0,0,9 0/0:32,0:32:0:.:.:0,0,592 ./.:20,0:20 ./.:44,0:44 ./.:14,0:14 0/0:52,0:52:0:.:.:0,0,746 0/0:21,0:21:0:.:.:0,0,505 ./.:18,0:18 ./.:15,0:15 ./.:12,0:12 ./.:13,0:13 ./.:20,0:20 0/0:9,0:9:0:.:.:0,0,33 0/0:7,0:7:0:.:.:0,0,95 ./.:21,0:21 0/0:41,0:41:0:.:.:0,0,185 0/0:22,0:22:0:.:.:0,0,82 0/0:18,0:18:0:.:.:0,0,385 0/0:14,0:14:0:.:.:0,0,95 0/0:21,0:21:0:.:.:0,0,3 0/0:18,0:18:48:.:.:0,48,720 ./.:8,0:8 ./.:19,0:19 ./.:8,0:8 0/0:9,0:9:0:.:.:0,0,185 0/0:33,0:33:0:.:.:0,0,631 ./.:40,0:40 0/0:41,0:41:0:.:.:0,0,339 0/0:26,0:26:0:.:.:0,0,130 0/0:13,0:13:0:.:.:0,0,136 0/0:20,0:20:0:.:.:0,0,42 0/0:18,0:18:0:.:.:0,0,441 0/0:16,0:16:0:.:.:0,0,155 ./.:15,0:15 ./.:24,0:24 0/0:8,0:8:0:.:.:0,0,208 0/1:20,20:40:99:1|0:11847334_G_GGAA:607,0,773 ./.:46,0:46 ./.:14,0:14 0/0:11,0:11:0:.:.:0,0,318 0/0:31,0:31:0:.:.:0,0,186 0/0:23,0:23:0:.:.:0,0,80 0/0:18,0:18:36:.:.:0,36,540 ./.:11,0:11 ./.:18,0:18 0/0:26,0:26:48:.:.:0,48,720 0/0:22,0:22:51:.:.:0,51,765 0/0:11,0:11:0:.:.:0,0,173 0/0:18,0:18:54:.:.:0,54,574 ./.:5,0:5 0/0:35,0:35:0:.:.:0,0,494 0/0:19,0:19:0:.:.:0,0,155 0/0:35,0:35:0:.:.:0,0,933 0/0:37,0:37:0:.:.:0,0,460 ./.:22,0:22 0/0:19,0:19:42:.:.:0,42,630 0/0:11,0:11:0:.:.:0,0,104 ./.:65,0:65 0/0:29,0:29:13:.:.:0,13,889 ./.:19,0:19 0/0:37,0:37:0:.:.:0,0,259 0/0:26,0:26:38:.:.:0,38,871 ./.:22,0:22 ./.:20,0:20 0/0:5,0:5:0:.:.:0,0,98 ./.:63,0:63 0/0:24,0:24:0:.:.:0,0,352 ./.:25,0:25 0/0:9,0:9:0:.:.:0,0,31 0/0:16,0:16:0:.:.:0,0,359 0/0:25,0:25:0:.:.:0,0,554 ./.:44,0:44 ./.:23,0:23 0/0:8,0:8:0:.:.:0,0,119 0/0:21,0:21:0:.:.:0,0,387 0/0:34,0:34:73:.:.:0,73,1189 0/0:13,0:13:0:.:.:0,0,11 ./.:13,0:13 ./.:17,0:17 ./.:20,0:20 1 11847436 rs2184226 T C 3470.74 . AC=11;AF=0.055;AN=200;BaseQRankSum=0.633;ClippingRankSum=0.367;DB;DP=1870;FS=3.793;InbreedingCoeff=-0.0688;MLEAC=11;MLEAF=0.055;MQ=56.43;MQRankSum=-1.740e-01;QD=15.70;ReadPosRankSum=-9.900e-02;SOR=0.542 GT:AD:DP:GQ:PL 0/0:16,0:16:39:0,39,585 0/0:19,0:19:42:0,42,630 0/0:33,0:33:0:0,0,1008 0/0:18,0:18:45:0,45,675 0/0:19,0:19:51:0,51,765 0/0:26,0:26:75:0,75,1125 0/0:10,0:10:27:0,27,405 0/0:13,0:13:33:0,33,495 0/0:23,0:23:29:0,29,760 0/1:3,14:17:46:429,0,46 0/0:16,0:16:42:0,42,630 0/0:7,0:7:15:0,15,225 0/0:14,0:14:39:0,39,585 0/0:16,0:16:45:0,45,675 0/0:11,0:11:33:0,33,410 0/0:17,0:17:42:0,42,630 0/1:7,6:13:99:193,0,211 0/0:16,0:16:10:0,10,528 0/0:21,0:21:48:0,48,720 0/0:38,0:38:99:0,99,1485 0/0:20,0:20:51:0,51,765 0/1:5,13:18:99:446,0,127 0/0:14,0:14:33:0,33,495 0/0:34,0:34:90:0,90,1350 0/0:17,0:17:39:0,39,585 0/0:43,0:43:99:0,99,1485 0/0:15,0:15:42:0,42,630 0/0:7,0:7:15:0,15,225 0/0:12,0:12:24:0,24,360 0/0:15,0:15:42:0,42,630 0/0:5,0:5:15:0,15,167 0/0:21,0:21:51:0,51,765 0/0:10,0:10:30:0,30,364 0/0:8,0:8:21:0,21,315 0/0:24,0:24:63:0,63,945 0/0:39,0:39:99:0,99,1485 0/0:16,0:16:39:0,39,585 0/0:16,0:16:42:0,42,630 0/0:16,0:16:45:0,45,675 0/0:15,0:15:36:0,36,540 0/0:14,0:14:30:0,30,450 0/0:5,0:5:12:0,12,180 0/0:16,0:16:39:0,39,585 0/0:8,0:8:21:0,21,315 0/0:10,0:10:21:0,21,315 0/0:18,0:18:48:0,48,720 0/0:20,0:20:60:0,60,777 0/0:34,0:34:81:0,81,1215 0/1:9,10:19:99:243,0,243 0/0:17,0:17:45:0,45,675 0/1:8,7:15:99:202,0,251 0/0:8,0:8:21:0,21,315 0/0:20,0:20:48:0,48,720 0/0:16,0:16:45:0,45,675 0/1:11,16:27:99:537,0,339 0/0:12,0:12:30:0,30,450 0/0:34,0:34:72:0,72,1080 0/0:39,0:39:99:0,99,1485 0/0:8,0:8:21:0,21,315 0/0:15,0:15:39:0,39,585 0/0:31,0:31:54:0,54,1064 0/0:20,0:20:48:0,48,720 0/0:21,0:21:51:0,51,765 0/0:9,0:9:24:0,24,360 0/0:15,0:15:39:0,39,585 0/0:19,0:19:48:0,48,720 0/1:11,12:23:99:369,0,324 0/0:13,0:13:36:0,36,540 0/0:14,0:14:0:0,0,300 0/0:13,0:13:27:0,27,429 0/0:23,0:23:60:0,60,863 0/0:12,0:12:30:0,30,450 0/1:11,7:18:99:185,0,357 0/0:20,0:20:42:0,42,630 0/0:21,0:21:60:0,60,781 0/0:30,0:30:60:0,60,900 0/0:15,0:15:42:0,42,630 0/0:49,0:49:99:0,108,1620 0/0:25,0:25:57:0,57,855 0/0:11,0:11:24:0,24,360 0/1:14,15:29:99:456,0,425 0/0:16,0:16:33:0,33,507 0/0:17,0:17:45:0,45,675 0/0:12,0:12:27:0,27,405 0/0:4,0:4:12:0,12,155 0/0:49,0:49:99:0,104,1665 0/1:14,11:25:99:292,0,431 0/0:26,0:26:72:0,72,1080 0/0:10,0:10:27:0,27,405 0/0:9,0:9:24:0,24,360 0/0:22,0:22:48:0,48,720 0/0:38,0:38:99:0,99,1485 0/0:15,0:15:42:0,42,630 0/0:5,0:5:0:0,0,35 0/0:25,0:25:72:0,72,1080 0/1:8,9:17:99:282,0,231 0/0:13,0:13:33:0,33,495 0/0:13,0:13:33:0,33,495 0/0:17,0:17:39:0,39,585 0/0:19,0:19:42:0,42,630 1 11847449 rs3737967 G A 1748.14 . AC=6;AF=0.030;AN=200;BaseQRankSum=0.101;ClippingRankSum=0.818;DB;DP=1884;FS=10.662;InbreedingCoeff=-0.0302;MLEAC=6;MLEAF=0.030;MQ=60.00;MQRankSum=-4.100e-02;QD=15.47;ReadPosRankSum=-1.930e-01;SOR=1.380 GT:AD:DP:GQ:PL 0/0:15,0:15:33:0,33,495 0/0:22,0:22:60:0,60,900 0/0:30,0:30:78:0,78,1170 0/0:22,0:22:54:0,54,810 0/0:21,0:21:51:0,51,765 0/0:32,0:32:72:0,72,1080 0/0:12,0:12:30:0,30,450 0/0:14,0:14:27:0,27,405 0/0:23,0:23:51:0,51,765 0/0:20,0:20:57:0,57,855 0/0:15,0:15:33:0,33,495 0/0:4,0:4:9:0,9,135 0/0:15,0:15:36:0,36,540 0/0:17,0:17:36:0,36,540 0/0:10,0:10:30:0,30,351 0/0:14,0:14:39:0,39,585 0/0:15,0:15:39:0,39,585 0/0:19,0:19:48:0,48,720 0/0:25,0:25:60:0,60,900 0/0:38,0:38:99:0,99,1485 0/0:23,0:23:48:0,48,720 0/0:19,0:19:45:0,45,675 0/0:16,0:16:24:0,24,360 0/0:36,0:36:99:0,99,1485 0/0:15,0:15:39:0,39,585 0/0:43,0:43:99:0,99,1485 0/0:15,0:15:39:0,39,585 0/0:7,0:7:18:0,18,270 0/0:10,0:10:30:0,30,353 0/0:13,0:13:30:0,30,450 0/0:5,0:5:12:0,12,180 0/0:22,0:22:60:0,60,900 0/0:11,0:11:27:0,27,405 0/0:9,0:9:21:0,21,315 0/0:28,0:28:54:0,54,810 0/0:36,0:36:73:0,73,1144 0/1:8,9:17:99:286,0,245 0/1:6,8:14:99:246,0,167 0/0:16,0:16:48:0,48,540 0/0:17,0:17:51:0,51,629 0/0:9,0:9:27:0,27,295 0/0:3,0:3:9:0,9,108 0/0:14,0:14:27:0,27,405 0/0:7,0:7:12:0,12,180 0/0:9,0:9:24:0,24,360 0/1:9,10:19:99:294,0,216 0/0:25,0:25:60:0,60,900 0/0:28,0:28:60:0,60,900 0/0:16,0:16:13:0,13,493 0/0:12,0:12:36:0,36,443 0/0:19,0:19:45:0,45,675 0/0:14,0:14:30:0,30,450 0/1:9,10:19:99:273,0,251 0/0:19,0:19:48:0,48,720 0/0:16,0:16:39:0,39,585 0/0:11,0:11:30:0,30,450 0/0:38,0:38:93:0,93,1395 0/0:33,0:33:66:0,66,990 0/0:10,0:10:24:0,24,360 0/0:17,0:17:45:0,45,675 0/0:30,0:30:57:0,57,855 0/0:14,0:14:33:0,33,495 0/0:24,0:24:60:0,60,900 0/0:10,0:10:27:0,27,405 0/0:15,0:15:33:0,33,495 0/0:19,0:19:36:0,36,540 0/0:22,0:22:60:0,60,900 0/0:17,0:17:45:0,45,675 0/0:15,0:15:33:0,33,495 0/0:10,0:10:24:0,24,360 0/0:23,0:23:60:0,60,863 0/1:6,7:13:99:192,0,155 0/0:20,0:20:45:0,45,675 0/0:26,0:26:60:0,60,900 0/0:31,0:31:69:0,69,1035 0/0:26,0:26:60:0,60,900 0/0:11,0:11:27:0,27,405 0/0:49,0:49:99:0,108,1620 0/0:25,0:25:49:0,49,818 0/0:14,0:14:39:0,39,585 0/0:30,0:30:72:0,72,1080 0/0:18,0:18:51:0,51,765 0/0:18,0:18:39:0,39,585 0/0:11,0:11:27:0,27,405 0/0:3,0:3:9:0,9,116 0/0:49,0:49:99:0,104,1665 0/0:22,0:22:42:0,42,630 0/0:24,0:24:60:0,60,900 0/0:9,0:9:21:0,21,315 0/0:9,0:9:0:0,0,13 0/0:16,0:16:33:0,33,495 0/0:38,0:38:99:0,99,1485 0/0:15,0:15:36:0,36,540 0/0:4,0:4:12:0,12,141 0/1:13,18:31:99:570,0,380 0/0:21,0:21:48:0,48,720 0/0:14,0:14:24:0,24,360 0/0:13,0:13:27:0,27,405 0/0:12,0:12:33:0,33,495 0/0:19,0:19:54:0,54,810 1 11847691 . C T 548.72 . AC=1;AF=5.000e-03;AN=200;BaseQRankSum=-1.865e+00;ClippingRankSum=0.483;DP=3437;FS=9.551;InbreedingCoeff=-0.0054;MLEAC=1;MLEAF=5.000e-03;MQ=59.54;MQRankSum=-6.650e-01;QD=13.38;ReadPosRankSum=-3.117e+00;SOR=0.117 GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,102,1530 0/0:38,0:38:99:0,102,1302 0/0:45,0:45:99:0,102,1530 0/1:21,20:41:99:591,0,672 0/0:35,0:35:75:0,75,1125 0/0:38,0:38:99:0,99,1485 0/0:32,0:32:66:0,66,990 0/0:41,0:41:93:0,93,1395 0/0:36,0:36:87:0,87,1305 0/0:36,0:36:99:0,102,1469 0/0:39,0:39:66:0,66,990 0/0:31,0:31:75:0,75,1125 0/0:10,0:10:30:0,30,358 0/0:40,0:40:99:0,99,1460 0/0:33,0:33:93:0,93,1395 0/0:23,0:23:48:0,48,720 0/0:35,0:35:84:0,84,1260 0/0:38,0:38:99:0,102,1530 0/0:40,0:40:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:41,0:41:99:0,105,1575 0/0:36,0:36:85:0,85,1249 0/0:42,0:42:99:0,102,1530 0/0:34,0:34:72:0,72,1080 0/0:42,0:42:99:0,99,1485 0/0:28,0:28:60:0,60,900 0/0:41,0:41:93:0,93,1395 0/0:30,0:30:60:0,60,900 0/0:26,0:26:72:0,72,1080 0/0:28,0:28:60:0,60,900 0/0:41,0:41:99:0,99,1485 0/0:38,0:38:96:0,96,1440 0/0:28,0:28:72:0,72,1080 0/0:42,0:42:99:0,99,1485 0/0:58,0:58:99:0,120,1800 0/0:25,0:25:60:0,60,900 0/0:40,0:40:99:0,99,1485 0/0:27,0:27:66:0,66,990 0/0:38,0:38:99:0,102,1530 0/0:32,0:32:78:0,78,1170 0/0:27,0:27:60:0,60,900 0/0:37,0:37:99:0,99,1485 0/0:20,0:20:39:0,39,585 0/0:25,0:25:54:0,54,810 0/0:40,0:40:99:0,99,1447 0/0:40,0:40:93:0,93,1395 0/0:39,0:39:99:0,102,1475 0/0:36,0:36:81:0,81,1215 0/0:28,0:28:60:0,60,900 0/0:34,0:34:88:0,88,1160 0/0:27,0:27:72:0,72,952 0/0:30,0:30:72:0,72,1080 0/0:37,0:37:84:0,84,1260 0/0:41,0:41:99:0,99,1485 0/0:7,0:7:15:0,15,225 0/0:33,0:33:99:0,99,1205 0/0:40,0:40:99:0,99,1485 0/0:29,0:29:60:0,60,900 0/0:31,0:31:75:0,75,1125 0/0:44,0:44:99:0,99,1485 0/0:35,0:35:93:0,93,1395 0/0:30,0:30:72:0,72,1080 0/0:28,0:28:66:0,66,990 0/0:21,0:21:51:0,51,765 0/0:37,0:37:90:0,90,1350 0/0:34,0:34:90:0,90,1350 0/0:38,0:38:93:0,93,1395 0/0:36,0:36:81:0,81,1215 0/0:22,0:22:51:0,51,765 0/0:37,0:37:84:0,84,1260 0/0:35,0:35:81:0,81,1215 0/0:41,0:41:99:0,99,1485 0/0:36,0:36:99:0,101,1376 0/0:38,0:38:99:0,99,1485 0/0:38,0:38:99:0,99,1473 0/0:29,0:29:63:0,63,945 0/0:47,0:47:99:0,105,1575 0/0:41,0:41:99:0,99,1485 0/0:31,0:31:63:0,63,945 0/0:43,0:43:99:0,99,1485 0/0:42,0:42:99:0,102,1530 0/0:43,0:43:99:0,102,1530 0/0:37,0:37:90:0,90,1350 0/0:7,0:7:21:0,21,271 0/0:49,0:49:99:0,104,1665 0/0:43,0:43:99:0,99,1485 0/0:37,0:37:99:0,99,1485 0/0:21,0:21:42:0,42,630 0/0:20,0:20:54:0,54,810 0/0:37,0:37:81:0,81,1215 0/0:39,0:39:99:0,99,1485 0/0:32,0:32:84:0,84,1260 0/0:6,0:6:15:0,15,225 0/0:41,0:41:99:0,99,1485 0/0:41,0:41:99:0,102,1418 0/0:29,0:29:66:0,66,990 0/0:32,0:32:81:0,81,1215 0/0:31,0:31:75:0,75,1125 0/0:35,0:35:93:0,93,1395 1 11847740 rs35562212 CCT C 4789.74 . AC=6;AF=0.030;AN=200;BaseQRankSum=-2.472e+00;ClippingRankSum=0.364;DB;DP=3701;FS=3.654;InbreedingCoeff=-0.0326;MLEAC=6;MLEAF=0.030;MQ=57.25;MQRankSum=0.292;QD=14.83;ReadPosRankSum=0.221;SOR=0.895 GT:AD:DP:GQ:PL 0/0:36,0:36:93:0,93,1395 0/1:36,31:67:99:1131,0,1348 0/0:50,0:50:99:0,117,1755 0/0:45,0:45:99:0,99,1485 0/0:49,0:49:99:0,105,1575 0/0:38,0:38:99:0,99,1485 0/0:38,0:38:87:0,87,1305 0/0:31,0:31:72:0,72,1080 0/0:33,0:33:81:0,81,1215 0/0:55,0:55:99:0,99,1485 0/0:29,0:29:75:0,75,1125 0/0:26,0:26:60:0,60,900 0/0:2,0:2:6:0,6,72 0/0:38,0:38:81:0,81,1215 0/0:24,0:24:60:0,60,900 0/0:28,0:28:72:0,72,1080 0/0:41,0:41:99:0,102,1530 0/0:53,0:53:99:0,108,1620 0/0:48,0:48:99:0,105,1575 0/0:51,0:51:99:0,120,1800 0/0:48,0:48:99:0,102,1530 0/0:41,0:41:99:0,105,1575 0/0:34,0:34:90:0,90,1350 0/0:42,0:42:99:0,102,1530 0/0:27,0:27:81:0,81,989 0/0:42,0:42:99:0,99,1485 0/0:31,0:31:84:0,84,1260 0/0:31,0:31:72:0,72,1080 0/0:27,0:27:60:0,60,900 0/0:27,0:27:66:0,66,990 0/0:24,0:24:63:0,63,945 0/0:38,0:38:81:0,81,1215 0/0:35,0:35:81:0,81,1215 0/1:20,12:32:99:392,0,768 0/0:42,0:42:99:0,99,1485 0/0:58,0:58:99:0,120,1800 0/0:32,0:32:72:0,72,1080 0/0:42,0:42:99:0,99,1485 0/0:31,0:31:81:0,81,1215 0/0:46,0:46:87:0,87,1615 0/0:21,0:21:54:0,54,810 0/0:14,0:14:36:0,36,540 0/0:27,0:27:60:0,60,900 0/0:21,0:21:54:0,54,810 0/0:43,0:43:99:0,105,1575 0/0:40,0:40:99:0,99,1447 0/0:45,0:45:90:0,90,1350 0/1:35,34:69:99:1233,0,1263 0/0:42,0:42:99:0,99,1485 0/0:23,0:23:54:0,54,810 0/0:33,0:33:35:0,35,1053 0/0:28,0:28:60:0,60,900 0/0:24,0:24:63:0,63,945 0/0:36,0:36:81:0,81,1215 0/0:48,0:48:99:0,105,1575 0/0:9,0:9:9:0,9,135 0/0:33,0:33:99:0,99,1205 0/0:40,0:40:99:0,99,1485 0/0:27,0:27:60:0,60,900 0/0:24,0:24:60:0,60,900 0/0:39,0:39:99:0,102,1530 0/0:38,0:38:99:0,99,1450 0/0:39,0:39:90:0,90,1350 0/0:28,0:28:72:0,72,1080 0/0:30,0:30:69:0,69,1035 0/0:43,0:43:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:36,0:36:84:0,84,1260 0/0:42,0:42:99:0,102,1530 0/0:25,0:25:60:0,60,858 0/0:45,0:45:99:0,105,1575 0/0:31,0:31:72:0,72,1080 0/0:41,0:41:99:0,99,1485 0/1:35,18:53:99:606,0,1371 0/0:38,0:38:99:0,99,1485 0/1:44,31:75:99:1094,0,1696 0/0:40,0:40:99:0,99,1485 0/0:47,0:47:99:0,105,1575 0/0:44,0:44:99:0,99,1485 0/0:38,0:38:93:0,93,1395 0/0:43,0:43:99:0,99,1485 0/0:43,0:43:99:0,102,1530 0/0:33,0:33:81:0,81,1215 0/0:41,0:41:99:0,99,1485 0/0:8,0:8:24:0,24,304 0/0:49,0:49:99:0,104,1665 0/0:60,0:60:99:0,120,1800 0/0:44,0:44:99:0,99,1485 0/1:14,13:27:99:447,0,529 0/0:24,0:24:60:0,60,900 0/0:42,0:42:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:24,0:24:60:0,60,900 0/0:9,0:9:24:0,24,360 0/0:39,0:39:99:0,99,1485 0/0:48,0:48:99:0,99,1485 0/0:37,0:37:90:0,90,1350 0/0:35,0:35:81:0,81,1215 0/0:34,0:34:81:0,81,1215 0/0:43,0:43:90:0,90,1350 1 11847759 rs3737966 C T 78300.42 . AC=112;AF=0.560;AN=200;BaseQRankSum=0.057;ClippingRankSum=-2.220e-01;DB;DP=4315;FS=1.163;InbreedingCoeff=-0.1238;MLEAC=115;MLEAF=0.575;MQ=58.05;MQRankSum=0.354;QD=21.39;ReadPosRankSum=0.083;SOR=0.759 GT:AD:DP:GQ:PGT:PID:PL 0/1:22,18:40:99:.:.:513,0,629 0/1:28,39:67:99:.:.:1213,0,763 0/1:33,39:72:99:.:.:1112,0,840 1/1:0,49:49:99:.:.:1694,147,0 0/1:24,18:42:99:0|1:11847759_C_T:515,0,887 1/1:0,59:59:99:.:.:1978,176,0 0/1:14,14:28:99:.:.:420,0,456 1/1:0,30:30:90:.:.:1046,90,0 0/1:12,21:33:99:.:.:688,0,335 0/0:55,0:55:99:.:.:0,99,1485 0/1:19,9:28:99:.:.:233,0,569 0/0:26,0:26:60:.:.:0,60,900 0/0:4,0:4:0:.:.:0,0,10 1/1:0,35:35:99:.:.:1225,105,0 0/1:12,13:25:99:.:.:368,0,320 0/0:30,0:30:81:.:.:0,81,1215 0/1:24,15:39:99:.:.:440,0,797 0/0:52,0:52:20:.:.:0,20,1589 1/1:1,46:47:99:.:.:1541,107,0 1/1:0,64:64:99:.:.:2086,192,0 1/1:0,46:46:99:.:.:1642,138,0 0/1:43,26:69:99:.:.:716,0,1249 1/1:0,32:32:95:.:.:1078,95,0 1/1:1,100:101:99:.:.:3407,291,0 1/1:1,33:34:92:.:.:1175,92,0 0/1:37,52:89:99:0|1:11847759_C_T:1421,0,1408 0/1:21,16:37:99:.:.:464,0,661 1/1:1,32:33:70:.:.:1147,70,0 0/1:15,10:25:99:.:.:259,0,462 0/1:12,10:22:99:.:.:268,0,325 0/1:16,16:32:99:.:.:468,0,489 1/1:0,34:34:99:.:.:1254,102,0 1/1:0,31:31:93:.:.:1072,93,0 0/1:15,21:36:99:.:.:612,0,397 0/1:25,29:54:99:.:.:862,0,750 0/1:42,34:76:99:.:.:1017,0,1160 0/1:15,15:30:99:.:.:434,0,478 0/1:14,20:34:99:.:.:568,0,401 1/1:0,26:26:78:.:.:912,78,0 0/1:24,14:38:99:.:.:376,0,754 0/1:10,14:24:99:.:.:421,0,257 1/1:0,21:21:62:.:.:739,62,0 1/1:0,26:26:78:.:.:898,78,0 0/1:12,8:20:99:.:.:192,0,362 0/1:13,17:30:99:.:.:505,0,364 0/1:27,30:57:99:.:.:871,0,761 1/1:0,44:44:99:.:.:1581,132,0 0/1:41,33:74:99:.:.:844,0,1155 0/1:23,22:45:99:.:.:636,0,700 0/1:11,14:25:99:.:.:436,0,306 0/1:18,19:37:99:.:.:520,0,521 0/1:16,14:30:99:.:.:430,0,457 0/1:14,18:32:99:.:.:542,0,408 0/1:24,18:42:99:.:.:543,0,738 0/1:24,25:49:99:.:.:770,0,707 0/0:4,0:4:0:.:.:0,0,74 0/0:88,4:92:99:.:.:0,126,2740 0/1:33,42:75:99:.:.:1221,0,807 1/1:1,25:26:67:.:.:800,67,0 0/0:19,0:19:39:.:.:0,39,585 0/1:23,30:53:99:.:.:850,0,651 0/1:28,18:46:99:.:.:508,0,865 0/0:27,0:27:62:.:.:0,62,917 0/1:17,5:22:99:.:.:124,0,540 0/1:13,11:24:99:.:.:329,0,346 0/0:43,0:43:99:.:.:0,99,1485 0/0:33,0:33:78:.:.:0,78,1170 0/1:21,16:37:99:.:.:412,0,547 0/0:38,0:38:87:.:.:0,87,1305 0/1:13,13:26:99:.:.:361,0,406 0/1:23,22:45:99:.:.:678,0,676 0/1:15,12:27:99:.:.:337,0,424 0/1:27,19:46:99:.:.:537,0,808 0/1:20,39:59:99:.:.:1203,0,419 1/1:1,46:47:99:.:.:1477,105,0 0/1:68,7:75:5:.:.:5,0,2095 1/1:0,45:45:99:.:.:1562,134,0 1/1:3,131:134:99:.:.:4355,295,0 0/0:44,0:44:99:.:.:0,99,1485 1/1:0,38:38:99:.:.:1405,114,0 0/1:33,47:80:99:.:.:1467,0,966 0/0:54,0:54:78:.:.:0,78,1747 1/1:1,36:37:99:.:.:1210,100,0 1/1:0,45:45:99:.:.:1628,135,0 0/1:6,5:11:99:.:.:143,0,186 1/1:4,135:139:99:.:.:4380,272,0 0/1:37,28:65:99:.:.:705,0,1066 0/1:6,38:44:34:.:.:1244,0,34 0/1:10,8:18:99:.:.:205,0,305 0/0:25,0:25:51:.:.:0,51,765 0/1:23,16:39:99:.:.:441,0,639 1/1:0,73:73:99:.:.:2478,219,0 0/1:11,12:23:99:.:.:338,0,313 0/0:6,0:6:0:.:.:0,0,3 0/1:21,16:37:99:.:.:465,0,650 0/0:43,0:43:93:.:.:0,93,1409 0/1:18,17:35:99:.:.:513,0,548 1/1:1,32:33:88:.:.:1092,88,0 1/1:0,32:32:96:.:.:1164,96,0 1/1:1,31:32:66:.:.:936,66,0 1 11847772 rs3820192 G T 13551.91 . AC=23;AF=0.115;AN=200;BaseQRankSum=-9.360e-01;ClippingRankSum=0.214;DB;DP=3840;FS=4.049;InbreedingCoeff=-0.0345;MLEAC=23;MLEAF=0.115;MQ=58.67;MQRankSum=-6.140e-01;QD=13.58;ReadPosRankSum=-2.400e-01;SOR=0.996 GT:AD:DP:GQ:PGT:PID:PL 0/0:39,0:39:99:.:.:0,101,1575 0/0:48,0:48:99:.:.:0,99,1485 0/0:51,0:51:99:.:.:0,106,1665 0/0:48,0:48:96:.:.:0,96,1440 0/1:20,25:45:99:1|0:11847759_C_T:691,0,718 0/0:49,0:49:99:.:.:0,108,1620 0/0:31,0:31:69:.:.:0,69,1035 0/0:33,0:33:78:.:.:0,78,1170 0/1:20,15:35:99:.:.:402,0,618 0/0:55,0:55:99:.:.:0,99,1485 0/0:25,0:25:63:.:.:0,63,945 0/0:27,0:27:60:.:.:0,60,900 0/0:4,0:4:12:.:.:0,12,151 0/0:40,0:40:99:.:.:0,99,1485 0/1:15,9:24:99:.:.:206,0,472 1/1:0,31:31:93:.:.:1071,93,0 0/0:32,0:32:48:.:.:0,48,720 0/1:31,14:45:99:.:.:380,0,1033 0/0:49,0:49:99:.:.:0,105,1575 0/0:53,0:53:99:.:.:0,105,1575 0/0:41,0:41:99:.:.:0,99,1485 0/0:58,0:58:99:.:.:0,111,1665 0/0:34,0:34:72:.:.:0,72,1080 0/0:44,0:44:99:.:.:0,102,1530 0/0:40,0:40:87:.:.:0,87,1305 0/1:58,63:121:99:1|0:11847759_C_T:1732,0,2107 0/0:37,0:37:90:.:.:0,90,1350 0/0:36,0:36:75:.:.:0,75,1125 0/0:34,0:34:81:.:.:0,81,1215 0/0:26,0:26:60:.:.:0,60,900 0/0:33,0:33:78:.:.:0,78,1170 0/0:33,0:33:72:.:.:0,72,1080 0/0:33,0:33:75:.:.:0,75,1125 0/0:32,0:32:84:.:.:0,84,1260 0/1:29,20:49:99:.:.:584,0,902 0/0:44,0:44:99:.:.:0,99,1485 0/1:19,16:35:99:.:.:464,0,586 0/1:19,14:33:99:.:.:397,0,598 0/0:27,0:27:54:.:.:0,54,810 0/0:39,0:39:81:.:.:0,81,1215 0/0:20,0:20:48:.:.:0,48,720 0/0:23,0:23:60:.:.:0,60,900 0/0:34,0:34:64:.:.:0,64,1171 0/1:8,14:22:99:.:.:421,0,200 0/0:30,0:30:57:.:.:0,57,855 0/1:34,22:56:99:.:.:558,0,1037 0/0:43,0:43:99:.:.:0,99,1485 0/0:45,0:45:99:.:.:0,99,1485 0/0:42,0:42:99:.:.:0,99,1485 0/0:26,0:26:60:.:.:0,60,900 0/0:38,0:38:87:.:.:0,87,1305 0/1:16,17:33:99:.:.:492,0,508 0/1:20,14:34:99:.:.:360,0,643 0/0:44,0:44:99:.:.:0,99,1485 0/0:48,0:48:93:.:.:0,93,1395 0/0:7,0:7:21:.:.:0,21,209 0/1:45,41:86:99:.:.:1185,0,1361 0/0:42,0:42:99:.:.:0,99,1485 0/0:19,0:19:39:.:.:0,39,585 0/0:27,0:27:57:.:.:0,57,855 0/1:36,23:59:99:.:.:604,0,1128 0/0:39,0:39:99:.:.:0,99,1485 0/0:30,0:30:60:.:.:0,60,900 0/0:19,0:19:33:.:.:0,33,495 0/0:27,0:27:42:.:.:0,42,630 0/0:43,0:43:99:.:.:0,99,1485 0/0:35,0:35:72:.:.:0,72,1080 0/0:39,0:39:84:.:.:0,84,1260 0/0:36,0:36:66:.:.:0,66,990 0/0:28,0:28:57:.:.:0,57,855 0/1:27,28:55:99:.:.:802,0,834 0/1:14,13:27:99:.:.:383,0,443 0/0:47,0:47:99:.:.:0,99,1485 0/0:53,0:53:99:.:.:0,108,1620 0/0:49,0:49:99:.:.:0,105,1575 0/1:34,24:58:99:.:.:686,0,1030 0/0:43,0:43:99:.:.:0,99,1485 0/0:46,0:46:99:.:.:0,108,1620 0/0:44,0:44:99:.:.:0,99,1485 0/0:41,0:41:99:.:.:0,99,1485 0/0:45,0:45:99:.:.:0,102,1530 0/0:46,0:46:99:.:.:0,99,1485 0/0:40,0:40:99:.:.:0,99,1485 0/0:33,0:33:81:.:.:0,81,1215 0/0:10,0:10:24:.:.:0,24,360 0/0:44,0:44:99:.:.:0,105,1575 0/0:50,0:50:99:.:.:0,99,1485 0/0:42,0:42:99:.:.:0,105,1575 0/0:13,0:13:27:.:.:0,27,405 0/1:12,9:21:99:.:.:263,0,363 0/1:15,19:34:99:.:.:593,0,468 0/0:46,0:46:99:.:.:0,99,1485 0/0:24,0:24:45:.:.:0,45,675 0/0:4,0:4:6:.:.:0,6,90 0/1:14,31:45:99:.:.:954,0,383 0/1:30,20:50:99:.:.:582,0,942 0/0:40,0:40:90:.:.:0,90,1350 0/0:37,0:37:72:.:.:0,72,1080 0/0:35,0:35:84:.:.:0,84,1260 0/0:42,0:42:99:.:.:0,99,1485 1 11847861 rs1537516 G A 14573.43 . AC=22;AF=0.110;AN=200;BaseQRankSum=-3.060e-01;ClippingRankSum=-6.600e-02;DB;DP=4105;FS=3.250;InbreedingCoeff=-0.0217;MLEAC=22;MLEAF=0.110;MQ=58.61;MQRankSum=0.331;QD=14.32;ReadPosRankSum=0.103;SOR=0.518 GT:AD:DP:GQ:PL 0/0:41,0:41:90:0,90,1350 0/0:48,0:48:99:0,99,1485 0/0:77,0:77:46:0,46,2402 0/0:43,0:43:99:0,99,1485 0/1:29,20:49:99:631,0,951 0/0:49,0:49:99:0,108,1620 0/0:39,0:39:81:0,81,1215 0/0:39,0:39:99:0,99,1485 0/1:30,32:62:99:1018,0,957 0/0:59,0:59:27:0,27,1833 0/0:40,0:40:99:0,99,1464 0/0:40,0:40:99:0,99,1439 0/0:12,0:12:36:0,36,428 0/0:44,0:44:99:0,99,1485 0/1:20,18:38:99:557,0,606 1/1:0,28:28:84:1015,84,0 0/0:38,0:38:81:0,81,1215 0/1:27,23:50:99:721,0,849 0/0:49,0:49:99:0,105,1575 0/0:53,0:53:99:0,105,1575 0/0:48,0:48:99:0,102,1530 0/0:67,0:67:58:0,58,2220 0/0:38,0:38:93:0,93,1395 0/0:44,0:44:99:0,102,1530 0/0:28,0:28:72:0,72,1080 0/0:73,0:73:99:0,120,1800 0/0:37,0:37:78:0,78,1170 0/0:40,0:40:93:0,93,1395 0/0:26,0:26:60:0,60,900 0/0:29,0:29:66:0,66,990 0/0:29,0:29:72:0,72,1080 0/0:35,0:35:81:0,81,1215 0/0:26,0:26:60:0,60,866 0/0:31,0:31:87:0,87,1305 0/1:20,23:43:99:755,0,579 0/0:44,0:44:99:0,99,1485 0/1:17,18:35:99:561,0,566 0/1:22,27:49:99:873,0,703 0/0:40,0:40:99:0,99,1473 0/0:40,0:40:99:0,99,1485 0/0:21,0:21:45:0,45,675 0/0:30,0:30:60:0,60,900 0/0:42,0:42:99:0,102,1530 0/1:8,12:20:99:389,0,250 0/0:39,0:39:99:0,99,1485 0/1:45,29:74:99:836,0,1394 0/0:46,0:46:99:0,102,1530 0/0:45,0:45:99:0,99,1485 0/0:39,0:39:90:0,90,1350 0/0:23,0:23:60:0,60,900 0/0:38,0:38:93:0,93,1395 0/1:14,12:26:99:381,0,463 0/1:18,8:26:99:201,0,568 0/0:37,0:37:90:0,90,1350 0/0:34,0:34:87:0,87,1305 0/0:18,0:18:33:0,33,495 0/1:51,45:96:99:1353,0,1595 0/0:42,0:42:99:0,99,1485 0/0:29,0:29:60:0,60,900 0/0:38,0:38:90:0,90,1350 0/1:40,29:69:99:842,0,1235 0/0:43,0:43:99:0,99,1485 0/0:37,0:37:99:0,99,1485 0/0:27,0:27:60:0,60,900 0/0:34,0:34:81:0,81,1215 0/0:40,0:40:93:0,93,1395 0/0:41,0:41:99:0,102,1530 0/0:35,0:35:75:0,75,1125 0/0:40,0:40:90:0,90,1350 0/0:23,0:23:60:0,60,900 0/1:30,24:54:99:684,0,992 0/1:14,18:32:99:562,0,407 0/0:47,0:47:99:0,99,1485 0/0:53,0:53:99:0,108,1620 0/0:49,0:49:99:0,105,1575 0/1:47,30:77:99:856,0,1513 0/0:38,0:38:99:0,99,1485 0/0:46,0:46:99:0,108,1620 0/0:44,0:44:99:0,99,1485 0/0:43,0:43:99:0,102,1530 0/0:45,0:45:99:0,102,1530 0/0:41,0:41:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:14,0:14:27:0,27,405 0/0:44,0:44:99:0,105,1575 0/0:50,0:50:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:29,0:29:60:0,60,900 0/1:10,14:24:99:446,0,293 0/1:22,19:41:99:604,0,722 0/0:46,0:46:99:0,99,1485 0/0:24,0:24:60:0,60,900 0/0:11,0:11:18:0,18,270 0/1:39,24:63:99:675,0,1252 0/1:34,28:62:99:866,0,1107 0/0:34,0:34:81:0,81,1215 0/0:34,0:34:72:0,72,1080 0/0:35,0:35:81:0,81,1215 0/0:40,0:40:99:0,99,1449 1 11847902 rs1537515 C A 13938.84 . AC=22;AF=0.110;AN=200;BaseQRankSum=-2.209e+00;ClippingRankSum=0.279;DB;DP=4215;FS=3.225;InbreedingCoeff=-0.0244;MLEAC=22;MLEAF=0.110;MQ=58.78;MQRankSum=-2.490e-01;QD=13.45;ReadPosRankSum=-5.590e-01;SOR=0.964 GT:AD:DP:GQ:PL 0/0:42,0:42:99:0,99,1485 0/0:48,0:48:99:0,99,1485 0/0:44,0:44:99:0,99,1530 0/0:43,0:43:99:0,99,1485 0/1:29,17:46:99:464,0,967 0/0:49,0:49:99:0,108,1620 0/0:37,0:37:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/1:10,25:35:99:744,0,272 0/0:50,0:50:4:0,4,1508 0/0:39,0:39:81:0,81,1215 0/0:38,0:38:93:0,93,1395 0/0:32,0:32:75:0,75,1125 0/0:44,0:44:99:0,99,1485 0/1:19,11:30:99:265,0,603 1/1:0,39:39:99:1330,117,0 0/0:42,0:42:99:0,102,1530 0/1:39,28:67:99:715,0,1198 0/0:49,0:49:99:0,105,1575 0/0:53,0:53:99:0,105,1575 0/0:48,0:48:99:0,102,1530 0/0:89,0:89:72:0,72,2855 0/0:41,0:41:99:0,102,1530 0/0:44,0:44:99:0,102,1530 0/0:34,0:34:60:0,60,900 0/0:73,0:73:99:0,120,1800 0/0:41,0:41:99:0,102,1530 0/0:42,0:42:96:0,96,1440 0/0:30,0:30:81:0,81,1215 0/0:43,0:43:99:0,102,1530 0/0:35,0:35:75:0,75,1125 0/0:39,0:39:99:0,99,1485 0/0:24,0:24:60:0,60,900 0/0:33,0:33:72:0,72,1080 0/1:34,32:66:99:987,0,1083 0/0:44,0:44:99:0,99,1485 0/1:20,19:39:99:571,0,594 0/1:29,28:57:99:812,0,934 0/0:33,0:33:81:0,81,1215 0/0:40,0:40:99:0,99,1485 0/0:31,0:31:72:0,72,1080 0/0:31,0:31:69:0,69,1035 0/0:46,0:46:93:0,93,1395 0/1:19,16:35:99:478,0,545 0/0:21,0:21:42:0,42,630 0/1:37,32:69:99:810,0,1120 0/0:46,0:46:99:0,102,1530 0/0:45,0:45:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:31,0:31:72:0,72,1080 0/0:33,0:33:81:0,81,1215 0/1:24,16:40:99:418,0,773 0/1:13,17:30:99:534,0,392 0/0:39,0:39:99:0,99,1485 0/0:42,0:42:99:0,107,1501 0/0:18,0:18:51:0,51,765 0/1:48,45:93:99:1260,0,1427 0/0:42,0:42:99:0,99,1485 0/0:30,0:30:72:0,72,1080 0/0:40,0:40:99:0,99,1485 0/1:33,26:59:99:692,0,1065 0/0:43,0:43:99:0,99,1485 0/0:44,0:44:93:0,93,1395 0/0:24,0:24:60:0,60,900 0/0:31,0:31:63:0,63,945 0/0:43,0:43:99:0,99,1485 0/0:45,0:45:99:0,101,1530 0/0:37,0:37:84:0,84,1260 0/0:39,0:39:99:0,99,1485 0/0:29,0:29:60:0,60,900 0/1:25,18:43:99:496,0,829 0/1:25,15:40:99:388,0,777 0/0:47,0:47:99:0,99,1485 0/0:53,0:53:99:0,108,1620 0/0:49,0:49:99:0,105,1575 0/1:37,39:76:99:1088,0,1110 0/0:38,0:38:99:0,99,1485 0/0:46,0:46:99:0,108,1620 0/0:44,0:44:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:45,0:45:99:0,102,1530 0/0:41,0:41:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:12,0:12:24:0,24,360 0/0:44,0:44:99:0,105,1575 0/0:50,0:50:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:23,0:23:60:0,60,900 0/1:10,9:19:99:233,0,285 0/1:27,14:41:99:368,0,885 0/0:46,0:46:99:0,99,1485 0/0:41,0:41:81:0,81,1215 0/0:14,0:14:36:0,36,540 0/1:25,28:53:99:808,0,770 0/1:34,25:59:99:730,0,1110 0/0:39,0:39:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:41,0:41:99:0,105,1575 0/0:40,0:40:99:0,99,1449 1 11848068 rs1537514 G C 8839.75 . AC=23;AF=0.115;AN=200;BaseQRankSum=-1.291e+00;ClippingRankSum=-3.140e-01;DB;DP=2897;FS=2.557;InbreedingCoeff=-0.0380;MLEAC=23;MLEAF=0.115;MQ=59.01;MQRankSum=-1.780e-01;QD=13.37;ReadPosRankSum=-3.200e-01;SOR=0.902 GT:AD:DP:GQ:PL 0/0:23,0:23:54:0,54,810 0/0:37,0:37:99:0,102,1530 0/0:48,0:48:75:0,75,1617 0/0:28,0:28:72:0,72,1080 0/1:20,11:31:99:319,0,682 0/0:36,0:36:90:0,90,1350 0/0:20,0:20:42:0,42,630 0/0:27,0:27:61:0,61,945 0/1:18,17:35:99:528,0,596 0/0:24,0:24:54:0,54,810 0/0:16,0:16:36:0,36,540 0/0:23,0:23:54:0,54,810 0/0:41,0:41:90:0,90,1350 0/0:21,0:21:45:0,45,675 0/1:23,13:36:99:361,0,741 1/1:0,20:20:60:688,60,0 0/0:28,0:28:57:0,57,855 0/1:18,9:27:99:242,0,569 0/0:41,0:41:99:0,99,1415 0/0:53,0:53:99:0,105,1575 0/0:34,0:34:78:0,78,1170 0/0:40,0:40:99:0,99,1485 0/0:23,0:23:48:0,48,720 0/0:44,0:44:99:0,102,1530 0/0:21,0:21:42:0,42,630 0/1:30,34:64:99:982,0,904 0/0:27,0:27:57:0,57,855 0/0:20,0:20:57:0,57,855 0/0:24,0:24:60:0,60,900 0/0:24,0:24:63:0,63,945 0/0:16,0:16:39:0,39,585 0/0:35,0:35:75:0,75,1125 0/0:20,0:20:42:0,42,630 0/0:15,0:15:45:0,45,551 0/1:17,10:27:99:289,0,556 0/0:41,0:41:81:0,81,1215 0/1:14,8:22:99:243,0,484 0/1:20,15:35:99:470,0,647 0/0:16,0:16:39:0,39,585 0/0:22,0:22:45:0,45,675 0/0:15,0:15:24:0,24,360 0/0:17,0:17:39:0,39,585 0/0:23,0:23:60:0,60,900 0/1:8,9:17:99:278,0,221 0/0:23,0:23:54:0,54,810 0/1:29,20:49:99:589,0,905 0/0:28,0:28:66:0,66,990 0/0:45,0:45:99:0,99,1485 0/0:30,0:30:72:0,72,1080 0/0:7,0:7:9:0,9,135 0/0:18,0:18:45:0,45,675 0/1:17,13:30:99:396,0,567 0/1:11,8:19:99:239,0,331 0/0:35,0:35:90:0,90,1350 0/0:34,0:34:81:0,81,1215 0/0:39,0:39:92:0,92,1355 0/1:27,19:46:99:537,0,856 0/0:42,0:42:99:0,99,1485 0/0:22,0:22:33:0,33,731 0/0:25,0:25:60:0,60,900 0/1:16,10:26:99:295,0,540 0/0:23,0:23:54:0,54,810 0/0:28,0:28:69:0,69,1035 0/0:16,0:16:42:0,42,630 0/0:21,0:21:39:0,39,585 0/0:31,0:31:72:0,72,1080 0/0:29,0:29:72:0,72,1080 0/0:22,0:22:60:0,60,900 0/0:29,0:29:81:0,81,1215 0/0:12,0:12:30:0,30,450 0/1:12,10:22:99:291,0,376 0/1:12,9:21:99:256,0,395 0/0:42,0:42:99:0,105,1575 0/0:37,0:37:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/1:24,20:44:99:574,0,699 0/0:31,0:31:81:0,81,1215 0/0:46,0:46:99:0,108,1620 0/0:43,0:43:90:0,90,1350 0/0:28,0:28:60:0,60,900 0/0:45,0:45:99:0,102,1530 0/0:39,0:39:90:0,90,1350 0/0:26,0:26:57:0,57,855 0/0:28,0:28:60:0,60,900 0/0:10,0:10:0:0,0,307 0/0:44,0:44:99:0,105,1575 0/0:44,0:44:99:0,99,1485 0/0:33,0:33:81:0,81,1215 0/0:11,0:11:18:0,18,270 0/1:5,4:9:99:113,0,149 0/1:7,10:17:99:323,0,218 0/0:46,0:46:99:0,99,1485 0/0:18,0:18:42:0,42,630 0/0:32,0:32:84:0,84,1260 0/1:14,19:33:99:591,0,454 0/1:14,17:31:99:493,0,434 0/0:21,0:21:42:0,42,630 0/0:19,0:19:51:0,51,765 0/0:19,0:19:48:0,48,720 0/0:26,0:26:69:0,69,827 1 11848139 rs11559040 G A 14111.34 . AC=37;AF=0.187;AN=198;BaseQRankSum=-4.000e-01;ClippingRankSum=-2.400e-02;DB;DP=2353;FS=4.192;InbreedingCoeff=0.1028;MLEAC=37;MLEAF=0.187;MQ=60.00;MQRankSum=-8.700e-02;QD=19.46;ReadPosRankSum=0.00;SOR=0.707 GT:AD:DP:GQ:PGT:PID:PL 0/1:10,10:20:99:.:.:296,0,305 0/1:10,19:29:99:.:.:606,0,297 0/1:24,19:43:99:.:.:528,0,708 0/0:34,0:34:81:.:.:0,81,1215 0/0:23,0:23:60:.:.:0,60,855 0/0:36,0:36:81:.:.:0,81,1215 0/1:9,14:23:99:.:.:455,0,254 0/0:18,0:18:45:.:.:0,45,675 0/0:22,0:22:60:.:.:0,60,900 0/0:17,0:17:48:.:.:0,48,720 0/1:10,13:23:99:.:.:406,0,316 0/1:7,9:16:99:.:.:286,0,221 0/1:14,16:30:99:.:.:505,0,418 0/0:24,0:24:51:.:.:0,51,765 0/0:20,0:20:51:.:.:0,51,765 0/0:14,0:14:33:.:.:0,33,495 0/0:16,0:16:36:.:.:0,36,540 0/1:11,18:29:99:.:.:555,0,322 0/0:22,0:22:50:.:.:0,50,731 0/0:53,0:53:99:.:.:0,105,1575 0/0:25,0:25:54:.:.:0,54,810 0/0:37,0:37:90:.:.:0,90,1255 0/0:17,0:17:24:.:.:0,24,360 0/0:44,0:44:99:.:.:0,102,1530 0/0:7,0:7:15:.:.:0,15,225 0/0:45,0:45:99:.:.:0,105,1575 0/1:7,15:22:99:.:.:467,0,196 0/0:16,0:16:33:.:.:0,33,495 0/0:14,0:14:33:.:.:0,33,495 0/0:14,0:14:29:.:.:0,29,453 0/1:5,9:14:99:0|1:11848139_G_A:354,0,320 0/0:29,0:29:60:.:.:0,60,900 0/0:21,0:21:54:.:.:0,54,810 0/0:12,0:12:33:.:.:0,33,495 0/0:21,0:21:48:.:.:0,48,720 0/1:17,26:43:99:.:.:811,0,477 0/0:27,0:27:66:.:.:0,66,990 0/0:24,0:24:60:.:.:0,60,900 0/1:11,9:20:99:.:.:280,0,345 0/1:11,12:23:99:.:.:380,0,355 1/1:0,14:14:42:.:.:511,42,0 0/0:15,0:15:39:.:.:0,39,585 0/0:18,0:18:39:.:.:0,39,585 0/0:9,0:9:27:.:.:0,27,325 0/1:8,10:18:99:.:.:314,0,235 0/0:36,0:36:81:.:.:0,81,1215 0/0:22,0:22:57:.:.:0,57,855 0/0:40,0:40:99:.:.:0,99,1409 0/0:17,0:17:39:.:.:0,39,585 0/1:9,5:14:99:.:.:135,0,290 0/0:19,0:19:51:.:.:0,51,765 0/0:12,0:12:30:.:.:0,30,450 0/0:13,0:13:30:.:.:0,30,450 0/1:12,9:21:99:.:.:260,0,384 0/0:18,0:18:36:.:.:0,36,540 0/1:19,12:31:99:.:.:319,0,577 0/0:40,0:40:99:.:.:0,99,1485 0/0:42,0:42:99:.:.:0,99,1485 0/0:19,0:19:45:.:.:0,45,675 1/1:0,17:17:51:.:.:622,51,0 0/0:31,0:31:72:.:.:0,72,1080 0/1:13,14:27:99:.:.:436,0,396 1/1:0,23:23:69:.:.:844,69,0 0/0:14,0:14:39:.:.:0,39,585 0/0:14,0:14:33:.:.:0,33,495 1/1:0,15:15:45:.:.:557,45,0 0/1:8,17:25:99:.:.:555,0,223 0/1:12,7:19:99:.:.:196,0,361 0/1:6,14:20:99:.:.:456,0,165 0/1:6,6:12:99:.:.:191,0,179 0/0:21,0:21:45:.:.:0,45,675 0/0:15,0:15:39:.:.:0,39,585 0/0:27,0:27:69:.:.:0,69,1035 0/1:18,18:36:99:.:.:571,0,507 0/0:31,0:31:52:.:.:0,52,992 0/0:28,0:28:63:.:.:0,63,945 0/1:4,6:10:58:.:.:206,0,58 0/0:46,0:46:99:.:.:0,108,1620 1/1:0,32:32:96:.:.:1130,96,0 0/0:13,0:13:27:.:.:0,27,405 0/0:45,0:45:99:.:.:0,102,1530 0/1:3,24:27:17:.:.:789,0,17 0/0:20,0:20:36:.:.:0,36,540 0/0:19,0:19:45:.:.:0,45,675 ./.:0,0:0 0/0:44,0:44:99:.:.:0,105,1575 0/0:38,0:38:90:.:.:0,90,1350 0/0:27,0:27:72:.:.:0,72,1080 0/1:8,6:14:99:.:.:190,0,246 0/0:13,0:13:24:.:.:0,24,360 0/0:19,0:19:36:.:.:0,36,540 0/0:37,0:37:84:.:.:0,84,1260 0/0:12,0:12:24:.:.:0,24,360 0/0:18,0:18:45:.:.:0,45,675 0/0:28,0:28:72:.:.:0,72,1080 0/0:28,0:28:44:.:.:0,44,901 0/1:7,8:15:99:.:.:244,0,227 0/0:17,0:17:39:.:.:0,39,585 0/0:23,0:23:51:.:.:0,51,765 0/0:25,0:25:66:.:.:0,66,990 1 11848143 rs41275468 G A 310.79 . AC=1;AF=5.051e-03;AN=198;BaseQRankSum=-6.670e-01;ClippingRankSum=-4.000e-01;DB;DP=2335;FS=10.227;InbreedingCoeff=-0.0065;MLEAC=1;MLEAF=5.051e-03;MQ=60.00;MQRankSum=1.73;QD=22.20;ReadPosRankSum=0.533;SOR=3.036 GT:AD:DP:GQ:PGT:PID:PL 0/0:21,0:21:54:.:.:0,54,810 0/0:25,0:25:51:.:.:0,51,765 0/0:39,0:39:99:.:.:0,99,1485 0/0:32,0:32:72:.:.:0,72,1080 0/0:23,0:23:60:.:.:0,60,855 0/0:36,0:36:81:.:.:0,81,1215 0/0:22,0:22:63:.:.:0,63,945 0/0:17,0:17:48:.:.:0,48,720 0/0:27,0:27:72:.:.:0,72,1080 0/0:17,0:17:45:.:.:0,45,675 0/0:23,0:23:60:.:.:0,60,900 0/0:16,0:16:45:.:.:0,45,675 0/0:29,0:29:81:.:.:0,81,1215 0/0:19,0:19:48:.:.:0,48,720 0/0:22,0:22:54:.:.:0,54,810 0/0:13,0:13:33:.:.:0,33,495 0/0:18,0:18:36:.:.:0,36,540 0/0:28,0:28:60:.:.:0,60,900 0/0:23,0:23:57:.:.:0,57,855 0/0:53,0:53:99:.:.:0,105,1575 0/0:26,0:26:60:.:.:0,60,900 0/0:36,0:36:99:.:.:0,102,1530 0/0:16,0:16:21:.:.:0,21,315 0/0:44,0:44:99:.:.:0,102,1530 0/0:9,0:9:24:.:.:0,24,360 0/0:45,0:45:99:.:.:0,105,1575 0/0:23,0:23:41:.:.:0,41,822 0/0:19,0:19:36:.:.:0,36,540 0/0:15,0:15:36:.:.:0,36,540 0/0:16,0:16:22:.:.:0,22,537 0/1:5,9:14:99:0|1:11848139_G_A:353,0,320 0/0:25,0:25:57:.:.:0,57,855 0/0:23,0:23:54:.:.:0,54,810 0/0:12,0:12:33:.:.:0,33,495 0/0:22,0:22:51:.:.:0,51,765 0/0:49,0:49:99:.:.:0,105,1575 0/0:27,0:27:66:.:.:0,66,990 0/0:24,0:24:60:.:.:0,60,900 0/0:21,0:21:51:.:.:0,51,765 0/0:24,0:24:60:.:.:0,60,900 0/0:14,0:14:36:.:.:0,36,540 0/0:15,0:15:39:.:.:0,39,585 0/0:19,0:19:45:.:.:0,45,675 0/0:9,0:9:24:.:.:0,24,360 0/0:17,0:17:48:.:.:0,48,720 0/0:37,0:37:87:.:.:0,87,1305 0/0:22,0:22:57:.:.:0,57,855 0/0:40,0:40:99:.:.:0,99,1409 0/0:16,0:16:48:.:.:0,48,592 0/0:12,0:12:27:.:.:0,27,405 0/0:21,0:21:57:.:.:0,57,855 0/0:12,0:12:27:.:.:0,27,405 0/0:13,0:13:30:.:.:0,30,450 0/0:24,0:24:60:.:.:0,60,900 0/0:21,0:21:42:.:.:0,42,630 0/0:26,0:26:51:.:.:0,51,765 0/0:40,0:40:99:.:.:0,99,1485 0/0:42,0:42:99:.:.:0,99,1485 0/0:19,0:19:45:.:.:0,45,675 0/0:16,0:16:45:.:.:0,45,675 0/0:28,0:28:60:.:.:0,60,900 0/0:28,0:28:72:.:.:0,72,1080 0/0:20,0:20:42:.:.:0,42,630 0/0:15,0:15:42:.:.:0,42,630 0/0:13,0:13:30:.:.:0,30,450 0/0:14,0:14:36:.:.:0,36,540 0/0:28,0:28:78:.:.:0,78,1170 0/0:18,0:18:48:.:.:0,48,720 0/0:19,0:19:48:.:.:0,48,720 0/0:11,0:11:30:.:.:0,30,450 0/0:18,0:18:48:.:.:0,48,720 0/0:15,0:15:39:.:.:0,39,585 0/0:28,0:28:72:.:.:0,72,1080 0/0:30,0:30:81:.:.:0,81,1215 0/0:31,0:31:81:.:.:0,81,1215 0/0:28,0:28:43:.:.:0,43,937 0/0:10,0:10:27:.:.:0,27,405 0/0:46,0:46:99:.:.:0,108,1620 0/0:39,0:39:93:.:.:0,93,1395 0/0:13,0:13:30:.:.:0,30,450 0/0:45,0:45:99:.:.:0,102,1530 0/0:26,0:26:66:.:.:0,66,931 0/0:18,0:18:45:.:.:0,45,675 0/0:19,0:19:51:.:.:0,51,765 ./.:0,0:0 0/0:44,0:44:99:.:.:0,105,1575 0/0:40,0:40:99:.:.:0,99,1485 0/0:26,0:26:60:.:.:0,60,900 0/0:15,0:15:5:.:.:0,5,484 0/0:12,0:12:24:.:.:0,24,360 0/0:18,0:18:36:.:.:0,36,540 0/0:34,0:34:73:.:.:0,73,1198 0/0:10,0:10:27:.:.:0,27,405 0/0:19,0:19:54:.:.:0,54,810 0/0:28,0:28:72:.:.:0,72,1080 0/0:25,0:25:63:.:.:0,63,945 0/0:15,0:15:33:.:.:0,33,495 0/0:15,0:15:45:.:.:0,45,546 0/0:21,0:21:45:.:.:0,45,675 0/0:25,0:25:66:.:.:0,66,990 1 11848879 rs2077360 A G 95836.72 . AC=200;AF=1.00;AN=200;BaseQRankSum=1.51;ClippingRankSum=0.111;DB;DP=2840;FS=0.000;InbreedingCoeff=-0.0005;MLEAC=200;MLEAF=1.00;MQ=58.90;MQRankSum=-1.111e+00;QD=34.26;ReadPosRankSum=-7.000e-01;SOR=0.638 GT:AD:DP:GQ:PL 1/1:0,23:23:68:802,68,0 1/1:0,51:51:99:1773,153,0 1/1:0,43:43:99:1438,128,0 1/1:0,32:32:96:1137,96,0 1/1:0,24:24:71:828,71,0 1/1:0,54:54:99:1794,161,0 1/1:0,15:15:45:512,45,0 1/1:0,29:29:87:1010,87,0 1/1:0,27:27:81:925,81,0 1/1:0,25:25:75:848,75,0 1/1:0,16:16:48:562,48,0 1/1:0,16:16:48:594,48,0 1/1:0,11:11:33:383,33,0 1/1:0,26:26:78:948,78,0 1/1:0,13:13:39:423,39,0 1/1:0,24:24:72:802,72,0 1/1:0,20:20:60:719,60,0 1/1:0,22:22:66:755,66,0 1/1:0,40:40:99:1300,119,0 1/1:0,70:70:99:2391,210,0 1/1:0,32:32:96:1145,96,0 1/1:0,40:40:99:1342,119,0 1/1:0,17:17:51:604,51,0 1/1:0,67:67:99:2310,201,0 1/1:1,15:16:11:528,11,0 1/1:0,70:70:99:2272,209,0 1/1:0,17:17:51:612,51,0 1/1:0,19:19:57:692,57,0 1/1:0,18:18:54:673,54,0 1/1:0,12:12:36:399,36,0 1/1:0,14:14:42:494,42,0 1/1:0,32:32:96:1111,96,0 1/1:0,18:18:54:606,54,0 1/1:0,16:16:48:589,48,0 1/1:0,24:24:72:881,72,0 1/1:0,51:51:99:1621,152,0 1/1:0,26:26:76:837,76,0 1/1:0,28:28:84:994,84,0 1/1:0,21:21:62:699,62,0 1/1:0,21:21:63:749,63,0 1/1:0,12:12:36:377,36,0 1/1:0,12:12:36:452,36,0 1/1:0,16:16:48:584,48,0 1/1:0,15:15:45:530,45,0 1/1:0,13:13:39:445,39,0 1/1:0,41:41:99:1432,123,0 1/1:0,34:34:99:1180,102,0 1/1:1,46:47:99:1606,110,0 1/1:0,21:21:63:751,63,0 1/1:0,16:16:48:594,48,0 1/1:0,34:34:99:1164,102,0 1/1:0,21:21:63:766,63,0 1/1:0,26:26:77:872,77,0 1/1:0,22:22:65:731,65,0 1/1:0,25:25:75:920,75,0 1/1:0,7:7:21:250,21,0 1/1:0,49:49:99:1608,146,0 1/1:0,40:40:99:1367,119,0 1/1:0,20:20:60:713,60,0 1/1:0,25:25:75:880,75,0 1/1:0,34:34:99:1098,100,0 1/1:0,37:37:99:1288,110,0 1/1:0,28:28:84:975,84,0 1/1:0,14:14:42:486,42,0 1/1:0,14:14:42:444,42,0 1/1:0,28:28:84:996,84,0 1/1:0,22:22:66:774,66,0 1/1:0,22:22:66:750,66,0 1/1:0,23:23:69:761,69,0 1/1:0,17:17:50:505,50,0 1/1:0,24:24:72:845,72,0 1/1:0,15:15:45:522,45,0 1/1:0,27:27:80:896,80,0 1/1:0,51:51:99:1737,153,0 1/1:0,51:51:99:1733,152,0 1/1:1,38:39:99:1225,106,0 1/1:0,11:11:33:404,33,0 1/1:0,93:93:99:3275,279,0 1/1:0,35:35:99:1257,105,0 1/1:0,19:19:57:696,57,0 1/1:0,49:49:99:1760,147,0 1/1:0,21:21:62:652,62,0 1/1:0,27:27:81:920,81,0 1/1:0,29:29:86:955,86,0 1/1:0,9:9:27:335,27,0 1/1:0,73:73:99:2497,219,0 1/1:0,45:45:99:1556,135,0 1/1:0,32:32:94:979,94,0 1/1:0,9:9:27:307,27,0 1/1:0,12:12:36:439,36,0 1/1:0,29:29:87:1041,87,0 1/1:0,47:47:99:1541,140,0 1/1:0,18:18:54:591,54,0 1/1:0,6:6:18:225,18,0 1/1:0,29:29:86:989,86,0 1/1:0,35:35:99:1173,104,0 1/1:0,10:10:30:372,30,0 1/1:0,15:15:45:553,45,0 1/1:0,20:20:60:672,60,0 1/1:0,42:42:99:1311,126,0 1 11848972 rs72640221 G A 9603.46 . AC=22;AF=0.110;AN=200;BaseQRankSum=-1.862e+00;ClippingRankSum=0.105;DB;DP=3129;FS=0.000;InbreedingCoeff=-0.0270;MLEAC=22;MLEAF=0.110;MQ=58.84;MQRankSum=0.231;QD=13.28;ReadPosRankSum=-6.000e-02;SOR=0.679 GT:AD:DP:GQ:PL 0/0:25,0:25:54:0,54,810 0/0:42,0:42:99:0,99,1485 0/0:43,0:43:84:0,84,1433 0/0:42,0:42:99:0,99,1485 0/1:14,12:26:99:339,0,438 0/0:41,0:41:99:0,99,1411 0/0:22,0:22:54:0,54,810 0/0:27,0:27:72:0,72,1080 0/1:15,17:32:99:518,0,468 0/0:34,0:34:90:0,90,1350 0/0:31,0:31:81:0,81,1215 0/0:24,0:24:60:0,60,900 0/0:11,0:11:30:0,30,450 0/0:36,0:36:90:0,90,1350 0/1:5,15:20:99:473,0,137 1/1:0,22:22:66:748,66,0 0/0:19,0:19:51:0,51,765 0/1:23,17:40:99:481,0,593 0/0:35,0:35:66:0,66,1134 0/0:45,0:45:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:47,0:47:99:0,105,1575 0/0:22,0:22:39:0,39,585 0/0:52,0:52:99:0,114,1710 0/0:24,0:24:45:0,45,675 0/1:61,38:99:99:905,0,1852 0/0:36,0:36:90:0,90,1350 0/0:31,0:31:81:0,81,1215 0/0:27,0:27:60:0,60,900 0/0:13,0:13:30:0,30,450 0/0:16,0:16:33:0,33,495 0/0:30,0:30:72:0,72,1080 0/0:17,0:17:48:0,48,720 0/0:25,0:25:66:0,66,990 0/1:12,14:26:99:431,0,394 0/0:45,0:45:99:0,100,1530 0/1:17,14:31:99:420,0,532 0/1:12,18:30:99:501,0,341 0/0:25,0:25:60:0,60,900 0/0:21,0:21:48:0,48,720 0/0:18,0:18:45:0,45,675 0/0:17,0:17:51:0,51,608 0/0:33,0:33:72:0,72,1080 0/1:6,17:23:99:520,0,159 0/0:24,0:24:60:0,60,900 0/1:23,22:45:99:588,0,726 0/0:40,0:40:99:0,102,1530 0/0:44,0:44:99:0,99,1485 0/0:32,0:32:72:0,72,1080 0/0:19,0:19:51:0,51,765 0/0:28,0:28:51:0,51,765 0/1:12,8:20:99:206,0,385 0/1:16,16:32:99:487,0,487 0/0:37,0:37:93:0,93,1395 0/0:43,0:43:81:0,81,1215 0/0:8,0:8:24:0,24,271 0/1:33,20:53:99:522,0,1074 0/0:41,0:41:99:0,99,1485 0/0:20,0:20:57:0,57,855 0/0:23,0:23:57:0,57,855 0/1:23,13:36:99:267,0,743 0/0:26,0:26:60:0,60,900 0/0:26,0:26:69:0,69,1035 0/0:20,0:20:54:0,54,810 0/0:25,0:25:72:0,72,857 0/0:23,0:23:45:0,45,675 0/0:29,0:29:66:0,66,1049 0/0:17,0:17:45:0,45,675 0/0:29,0:29:72:0,72,1080 0/0:19,0:19:48:0,48,720 0/1:11,8:19:99:239,0,325 0/1:11,9:20:99:264,0,300 0/0:36,0:36:81:0,81,1215 0/0:39,0:39:99:0,105,1575 0/0:45,0:45:99:0,102,1530 0/1:29,15:44:99:383,0,952 0/0:19,0:19:33:0,33,495 0/0:74,0:74:99:0,120,1800 0/0:42,0:42:99:0,108,1620 0/0:33,0:33:81:0,81,1215 0/0:48,0:48:99:0,102,1530 0/0:29,0:29:77:0,77,1030 0/0:38,0:38:90:0,90,1350 0/0:38,0:38:81:0,81,1215 0/0:11,0:11:24:0,24,360 0/0:62,0:62:99:0,120,1800 0/0:42,0:42:99:0,108,1620 0/0:31,0:31:81:0,81,1215 0/0:18,0:18:42:0,42,630 0/0:14,0:14:0:0,0,275 0/1:18,14:32:99:413,0,591 0/0:41,0:41:99:0,99,1485 0/0:19,0:19:31:0,31,630 0/0:6,0:6:15:0,15,225 0/1:16,23:39:99:719,0,486 0/1:19,15:34:99:431,0,561 0/0:25,0:25:60:0,60,900 0/0:28,0:28:72:0,72,1080 0/0:26,0:26:60:0,60,900 0/0:43,0:43:99:0,99,1485 1 11849447 rs868014 A G 108513.72 . AC=200;AF=1.00;AN=200;BaseQRankSum=1.54;ClippingRankSum=-9.080e-01;DB;DP=3260;FS=0.001;MLEAC=200;MLEAF=1.00;MQ=58.93;MQRankSum=-7.430e-01;QD=33.80;ReadPosRankSum=-9.080e-01;SOR=1.672 GT:AD:DP:GQ:PL 1/1:0,23:23:69:821,69,0 1/1:0,34:34:99:1231,102,0 1/1:0,49:49:99:1489,145,0 1/1:0,45:45:99:1584,135,0 1/1:0,38:38:99:1320,114,0 1/1:0,56:56:99:1883,168,0 1/1:0,19:19:57:668,57,0 1/1:0,20:20:59:635,59,0 1/1:0,51:51:99:1752,153,0 1/1:0,27:27:80:809,80,0 1/1:0,18:18:54:637,54,0 1/1:0,29:29:87:1038,87,0 1/1:0,21:21:63:758,63,0 1/1:0,23:23:69:816,69,0 1/1:1,20:21:53:659,53,0 1/1:0,27:27:81:911,81,0 1/1:0,24:24:72:834,72,0 1/1:0,25:25:74:832,74,0 1/1:0,36:36:99:1231,107,0 1/1:0,68:68:99:2308,205,0 1/1:0,39:39:99:1290,117,0 1/1:0,42:42:99:1431,126,0 1/1:0,15:15:45:514,45,0 1/1:0,79:79:99:2763,237,0 1/1:0,26:26:78:907,78,0 1/1:0,65:65:99:2097,195,0 1/1:0,18:18:54:654,54,0 1/1:0,30:30:90:1075,90,0 1/1:0,25:25:75:857,75,0 1/1:0,18:18:54:625,54,0 1/1:0,21:21:63:722,63,0 1/1:0,30:30:90:1039,90,0 1/1:1,17:18:44:559,44,0 1/1:0,13:13:39:409,39,0 1/1:0,36:36:99:1232,108,0 1/1:0,48:48:99:1573,143,0 1/1:0,19:19:56:604,56,0 1/1:0,23:23:69:815,69,0 1/1:0,26:26:78:925,78,0 1/1:0,24:24:72:874,72,0 1/1:0,22:22:66:766,66,0 1/1:0,14:14:42:481,42,0 1/1:0,23:23:69:786,69,0 1/1:0,19:19:56:611,56,0 1/1:0,25:25:75:894,75,0 1/1:0,48:48:99:1588,143,0 1/1:0,37:37:99:1233,111,0 1/1:0,49:49:99:1609,146,0 1/1:0,35:35:99:1215,105,0 1/1:0,11:11:33:389,33,0 1/1:0,20:20:60:664,60,0 1/1:0,23:23:69:802,69,0 1/1:0,20:20:60:638,60,0 1/1:0,29:29:87:1052,87,0 1/1:0,37:37:99:1312,111,0 1/1:0,13:13:39:468,39,0 1/1:0,46:46:99:1542,138,0 1/1:1,48:49:99:1515,135,0 1/1:0,18:18:54:615,54,0 1/1:0,22:22:66:738,66,0 1/1:0,52:52:99:1676,155,0 1/1:0,21:21:63:762,63,0 1/1:0,33:33:99:1077,99,0 1/1:0,30:30:90:985,90,0 1/1:0,23:23:69:781,69,0 1/1:0,30:30:90:1027,90,0 1/1:0,20:20:60:702,60,0 1/1:0,32:32:96:1063,96,0 1/1:0,22:22:66:713,66,0 1/1:0,25:25:75:840,75,0 1/1:0,39:39:99:1386,117,0 1/1:0,25:25:75:847,75,0 1/1:0,39:39:99:1352,117,0 1/1:0,53:53:99:1813,159,0 1/1:0,39:39:99:1346,117,0 1/1:0,44:44:99:1402,132,0 1/1:0,26:26:78:931,78,0 1/1:0,119:119:99:3868,355,0 1/1:0,41:41:99:1395,122,0 1/1:0,24:24:72:818,72,0 1/1:0,66:66:99:2339,198,0 1/1:0,26:26:77:849,77,0 1/1:0,37:37:99:1275,110,0 1/1:0,30:30:90:1003,90,0 1/1:0,8:8:24:292,24,0 1/1:0,92:92:99:3070,275,0 1/1:0,43:43:99:1387,128,0 1/1:0,33:33:99:1075,99,0 1/1:0,6:6:18:220,18,0 1/1:0,12:12:36:409,36,0 1/1:0,34:34:99:1159,102,0 1/1:0,57:57:99:1908,171,0 1/1:0,19:19:57:629,57,0 1/1:0,9:9:27:323,27,0 1/1:0,35:35:99:1227,105,0 1/1:0,33:33:98:1027,98,0 1/1:0,23:23:69:789,69,0 1/1:0,22:22:66:799,66,0 1/1:0,37:37:99:1206,110,0 1/1:0,22:22:66:667,66,0 1 11850288 . C G 310.72 . AC=1;AF=5.000e-03;AN=200;BaseQRankSum=0.789;ClippingRankSum=1.44;DP=2964;FS=10.139;InbreedingCoeff=-0.0052;MLEAC=1;MLEAF=5.000e-03;MQ=59.07;MQRankSum=-5.170e-01;QD=12.43;ReadPosRankSum=0.843;SOR=0.061 GT:AD:DP:GQ:PL 0/0:30,0:30:75:0,75,1125 0/0:46,0:46:99:0,105,1575 0/0:37,0:37:99:0,99,1315 0/0:35,0:35:81:0,81,1215 0/0:23,0:23:48:0,48,720 0/0:49,0:49:99:0,99,1485 0/0:20,0:20:48:0,48,720 0/0:26,0:26:60:0,60,900 0/0:39,0:39:80:0,80,1398 0/0:23,0:23:57:0,57,855 0/0:23,0:23:54:0,54,810 0/0:16,0:16:39:0,39,585 0/0:9,0:9:24:0,24,360 0/0:26,0:26:57:0,57,855 0/0:28,0:28:71:0,71,1044 0/1:13,12:25:99:353,0,390 0/0:25,0:25:54:0,54,810 0/0:37,0:37:99:0,99,1485 0/0:43,0:43:99:0,102,1530 0/0:41,0:41:99:0,99,1485 0/0:34,0:34:93:0,93,1395 0/0:43,0:43:99:0,99,1485 0/0:20,0:20:48:0,48,720 0/0:45,0:45:99:0,102,1530 0/0:22,0:22:54:0,54,810 0/0:47,0:47:99:0,108,1478 0/0:21,0:21:54:0,54,810 0/0:26,0:26:66:0,66,894 0/0:23,0:23:66:0,66,990 0/0:21,0:21:57:0,57,855 0/0:15,0:15:36:0,36,540 0/0:27,0:27:65:0,65,989 0/0:33,0:33:72:0,72,1080 0/0:16,0:16:45:0,45,675 0/0:37,0:37:90:0,90,1350 0/0:41,0:41:99:0,99,1485 0/0:36,0:36:90:0,90,1350 0/0:33,0:33:90:0,90,1350 0/0:20,0:20:57:0,57,855 0/0:32,0:32:84:0,84,1260 0/0:16,0:16:42:0,42,630 0/0:17,0:17:39:0,39,585 0/0:17,0:17:45:0,45,675 0/0:22,0:22:54:0,54,810 0/0:26,0:26:57:0,57,855 0/0:33,0:33:90:0,90,1350 0/0:30,0:30:72:0,72,1080 0/0:43,0:43:99:0,101,1469 0/0:17,0:17:45:0,45,675 0/0:17,0:17:51:0,51,658 0/0:25,0:25:60:0,60,900 0/0:26,0:26:63:0,63,945 0/0:17,0:17:42:0,42,630 0/0:36,0:36:87:0,87,1305 0/0:28,0:28:81:0,81,1215 0/0:9,0:9:27:0,27,307 0/0:39,0:39:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:19,0:19:48:0,48,720 0/0:28,0:28:72:0,72,1080 0/0:39,0:39:99:0,99,1456 0/0:37,0:37:99:0,99,1485 0/0:27,0:27:60:0,60,900 0/0:22,0:22:48:0,48,720 0/0:24,0:24:57:0,57,875 0/0:32,0:32:81:0,81,1215 0/0:25,0:25:54:0,54,810 0/0:17,0:17:36:0,36,540 0/0:29,0:29:81:0,81,1215 0/0:22,0:22:51:0,51,765 0/0:31,0:31:81:0,81,1215 0/0:24,0:24:60:0,60,900 0/0:37,0:37:81:0,81,1215 0/0:41,0:41:99:0,102,1530 0/0:44,0:44:99:0,105,1575 0/0:47,0:47:99:0,99,1485 0/0:24,0:24:60:0,60,900 0/0:83,0:83:99:0,120,1800 0/0:39,0:39:99:0,99,1485 0/0:23,0:23:57:0,57,855 0/0:46,0:46:99:0,105,1575 0/0:29,0:29:72:0,72,1080 0/0:40,0:40:99:0,99,1485 0/0:27,0:27:54:0,54,810 0/0:7,0:7:21:0,21,246 0/0:72,0:72:99:0,120,1800 0/0:40,0:40:99:0,99,1485 0/0:37,0:37:99:0,99,1466 0/0:20,0:20:43:0,43,724 0/0:17,0:17:45:0,45,675 0/0:31,0:31:78:0,78,1170 0/0:44,0:44:99:0,104,1434 0/0:16,0:16:45:0,45,675 0/0:11,0:11:18:0,18,270 0/0:29,0:29:81:0,81,1215 0/0:39,0:39:99:0,99,1485 0/0:32,0:32:81:0,81,1215 0/0:21,0:21:51:0,51,765 0/0:24,0:24:66:0,66,990 0/0:18,0:18:48:0,48,720 1 11850365 rs4846049 T G 46377.20 . AC=128;AF=0.646;AN=198;BaseQRankSum=0.135;ClippingRankSum=0.101;DB;DP=2191;FS=0.580;InbreedingCoeff=-0.0492;MLEAC=132;MLEAF=0.667;MQ=58.99;MQRankSum=-2.900e-02;QD=23.82;ReadPosRankSum=0.024;SOR=0.641 GT:AD:DP:GQ:PL 0/1:10,6:16:99:177,0,293 0/1:17,19:36:99:628,0,498 0/1:15,6:21:99:148,0,433 1/1:0,28:28:84:996,84,0 0/1:11,9:20:99:286,0,366 1/1:0,31:31:93:1147,93,0 0/1:11,10:21:99:307,0,320 1/1:0,10:10:30:348,30,0 0/1:11,6:17:99:165,0,356 1/1:1,18:19:25:575,25,0 0/1:8,6:14:99:176,0,209 0/1:4,5:9:99:160,0,123 0/1:2,3:5:62:100,0,62 0/1:10,8:18:99:255,0,301 0/1:6,11:17:99:371,0,179 0/0:9,0:9:18:0,18,270 0/1:8,5:13:99:157,0,259 0/0:18,0:18:0:0,0,529 1/1:1,14:15:9:472,9,0 1/1:0,26:26:78:881,78,0 1/1:0,24:24:72:894,72,0 1/1:3,29:32:10:961,10,0 1/1:0,13:13:39:487,39,0 1/1:1,44:45:99:1618,125,0 1/1:0,16:16:48:555,48,0 0/1:40,23:63:99:588,0,1091 0/1:15,6:21:99:167,0,502 1/1:0,10:10:30:378,30,0 1/1:0,16:16:48:580,48,0 1/1:0,18:18:54:635,54,0 0/0:11,0:11:0:0,0,177 1/1:0,13:13:39:482,39,0 1/1:0,26:26:78:909,78,0 0/1:7,5:12:99:149,0,225 0/1:9,11:20:99:353,0,265 0/1:23,14:37:99:371,0,730 0/1:15,8:23:99:211,0,506 0/1:10,11:21:99:339,0,283 0/0:13,0:13:0:0,0,243 0/1:10,8:18:99:230,0,312 0/0:14,0:14:33:0,33,495 1/1:0,5:5:15:191,15,0 1/1:0,21:21:63:765,63,0 ./.:5,0:5 0/1:13,7:20:99:205,0,397 0/1:15,12:27:99:326,0,459 1/1:0,21:21:63:777,63,0 0/1:19,22:41:99:682,0,544 1/1:0,19:19:57:711,57,0 1/1:0,5:5:15:181,15,0 1/1:0,10:10:30:363,30,0 0/1:14,4:18:96:96,0,456 0/1:11,5:16:99:129,0,376 0/1:12,15:27:99:486,0,342 1/1:0,23:23:69:792,69,0 0/0:3,0:3:0:0,0,20 0/1:30,25:55:99:721,0,883 1/1:1,36:37:78:1247,78,0 1/1:0,9:9:27:331,27,0 0/0:21,0:21:54:0,54,810 0/1:17,19:36:99:578,0,493 0/1:11,7:18:99:204,0,347 0/0:13,0:13:36:0,36,540 1/1:0,12:12:36:453,36,0 1/1:0,17:17:51:577,51,0 0/0:26,0:26:54:0,54,810 0/1:11,6:17:99:167,0,349 0/1:5,8:13:99:243,0,141 0/1:8,6:14:99:167,0,257 0/1:10,10:20:99:303,0,285 0/1:11,10:21:99:276,0,328 0/1:11,11:22:99:336,0,350 1/1:0,28:28:84:1002,84,0 0/1:8,26:34:99:812,0,183 1/1:1,27:28:51:913,51,0 0/0:32,0:32:63:0,63,1129 0/1:6,10:16:99:336,0,174 1/1:2,87:89:99:2969,187,0 0/0:24,0:24:34:0,34,806 1/1:0,14:14:42:507,42,0 1/1:0,20:20:60:732,60,0 0/0:28,0:28:72:0,72,1080 0/1:20,15:35:99:450,0,620 1/1:0,23:23:68:804,68,0 0/0:3,0:3:0:0,0,38 1/1:3,64:67:93:2293,93,0 1/1:1,40:41:85:1437,85,0 0/1:2,21:23:10:650,0,10 1/1:0,6:6:18:229,18,0 0/1:4,6:10:99:184,0,117 0/1:14,10:24:99:269,0,427 1/1:1,40:41:89:1386,89,0 1/1:0,10:10:30:323,30,0 1/1:0,5:5:15:190,15,0 0/1:10,11:21:99:334,0,306 0/1:17,8:25:99:217,0,554 0/1:16,9:25:99:256,0,476 1/1:0,12:12:36:440,36,0 1/1:0,21:21:63:782,63,0 1/1:0,21:21:63:699,63,0 1 11850562 . CA C 200.06 . AC=1;AF=5.102e-03;AN=196;BaseQRankSum=-2.520e+00;ClippingRankSum=1.25;DP=1536;FS=2.398;InbreedingCoeff=-0.0155;MLEAC=1;MLEAF=5.102e-03;MQ=56.71;MQRankSum=0.597;QD=18.19;ReadPosRankSum=0.678;SOR=1.609 GT:AD:DP:GQ:PL 0/0:13,0:13:27:0,27,405 0/0:18,0:18:42:0,42,630 0/0:14,0:14:33:0,33,495 0/0:26,0:26:72:0,72,1080 0/0:18,0:18:42:0,42,630 0/0:22,0:22:60:0,60,900 0/0:16,0:16:36:0,36,540 0/0:14,0:14:33:0,33,495 0/0:13,0:13:30:0,30,450 0/0:6,0:6:12:0,12,180 0/0:11,0:11:30:0,30,450 0/0:8,0:8:21:0,21,315 0/0:2,0:2:3:0,3,45 0/0:12,0:12:30:0,30,450 0/0:14,0:14:36:0,36,540 0/0:6,0:6:15:0,15,225 0/0:17,0:17:39:0,39,585 0/0:13,0:13:30:0,30,450 0/0:29,0:29:72:0,72,1047 0/0:21,0:21:51:0,51,765 0/0:19,0:19:45:0,45,675 0/0:21,0:21:51:0,51,765 0/0:11,0:11:30:0,30,450 0/0:41,0:41:99:0,99,1485 0/0:8,0:8:18:0,18,270 0/0:31,0:31:72:0,72,1080 0/0:9,0:9:21:0,21,315 0/0:11,0:11:21:0,21,315 0/0:10,0:10:15:0,15,225 0/0:11,0:11:24:0,24,360 0/0:8,0:8:24:0,24,288 0/0:11,0:11:27:0,27,405 0/0:11,0:11:30:0,30,450 0/0:7,0:7:12:0,12,180 0/0:28,0:28:63:0,63,945 0/0:28,0:28:60:0,60,900 0/0:21,0:21:39:0,39,585 0/0:6,0:6:18:0,18,224 0/0:7,0:7:12:0,12,180 0/0:10,0:10:21:0,21,315 0/0:7,0:7:21:0,21,254 0/0:5,0:5:12:0,12,180 0/0:9,0:9:27:0,27,346 0/0:7,0:7:15:0,15,225 0/0:13,0:13:0:0,0,428 0/0:29,0:29:60:0,60,900 0/0:16,0:16:39:0,39,585 0/0:16,0:16:18:0,18,548 0/0:15,0:15:39:0,39,585 0/0:8,0:8:18:0,18,270 0/0:15,0:15:36:0,36,540 0/0:7,0:7:15:0,15,225 0/0:10,0:10:27:0,27,405 0/0:6,0:6:15:0,15,225 0/0:16,0:16:39:0,39,585 ./.:0,0:0 0/0:35,0:35:81:0,81,1215 0/0:30,0:30:60:0,60,900 0/0:9,0:9:21:0,21,315 0/0:17,0:17:33:0,33,495 0/0:24,0:24:57:0,57,855 0/0:12,0:12:33:0,33,495 0/0:10,0:10:27:0,27,405 0/0:13,0:13:30:0,30,450 0/0:11,0:11:27:0,27,405 0/0:13,0:13:27:0,27,405 0/0:16,0:16:36:0,36,540 0/0:8,0:8:24:0,24,297 0/0:17,0:17:39:0,39,585 0/1:4,7:11:99:242,0,125 0/0:17,0:17:45:0,45,675 0/0:11,0:11:30:0,30,450 0/0:25,0:25:57:0,57,855 0/0:21,0:21:57:0,57,855 0/0:32,0:32:72:0,72,1080 0/0:25,0:25:57:0,57,855 0/0:11,0:11:27:0,27,405 0/0:51,0:51:99:0,102,1530 0/0:12,0:12:27:0,27,405 0/0:8,0:8:18:0,18,270 0/0:28,0:28:72:0,72,1080 0/0:8,0:8:18:0,18,270 0/0:22,0:22:51:0,51,765 0/0:13,0:13:36:0,36,540 0/0:2,0:2:6:0,6,76 0/0:52,0:52:99:0,120,1800 0/0:16,0:16:39:0,39,585 0/0:16,0:16:36:0,36,540 0/0:4,0:4:9:0,9,135 0/0:5,0:5:6:0,6,90 0/0:18,0:18:42:0,42,630 0/0:25,0:25:60:0,60,900 0/0:4,0:4:12:0,12,147 ./.:0,0:0 0/0:22,0:22:57:0,57,855 0/0:21,0:21:60:0,60,900 0/0:14,0:14:36:0,36,540 0/0:14,0:14:24:0,24,360 0/0:17,0:17:30:0,30,450 0/0:15,0:15:36:0,36,540 1 11850750 rs35737219 G A 1540.62 . AC=3;AF=0.015;AN=200;BaseQRankSum=0.423;ClippingRankSum=1.10;DB;DP=2792;FS=0.000;InbreedingCoeff=-0.0165;MLEAC=3;MLEAF=0.015;MQ=57.75;MQRankSum=-5.920e-01;QD=12.63;ReadPosRankSum=0.254;SOR=0.728 GT:AD:DP:GQ:PL 0/0:32,0:32:90:0,90,1350 0/0:35,0:35:99:0,99,1485 0/0:32,0:32:87:0,87,1305 0/0:25,0:25:63:0,63,945 0/0:34,0:34:87:0,87,1305 0/0:38,0:38:90:0,90,1350 0/0:16,0:16:33:0,33,495 0/0:27,0:27:63:0,63,945 0/0:24,0:24:51:0,51,765 0/0:37,0:37:80:0,80,1191 0/0:17,0:17:30:0,30,450 0/0:13,0:13:36:0,36,540 0/0:7,0:7:21:0,21,244 0/0:26,0:26:66:0,66,990 0/0:22,0:22:60:0,60,900 0/0:19,0:19:51:0,51,765 0/0:29,0:29:72:0,72,1080 0/0:31,0:31:90:0,90,1350 0/0:35,0:35:92:0,92,1176 0/0:39,0:39:99:0,105,1274 0/0:35,0:35:84:0,84,1260 0/0:37,0:37:99:0,99,1301 0/0:20,0:20:60:0,60,709 0/0:42,0:42:99:0,99,1485 0/0:17,0:17:45:0,45,675 0/0:39,0:39:99:0,99,1485 0/0:19,0:19:45:0,45,675 0/0:22,0:22:57:0,57,855 0/0:24,0:24:60:0,60,900 0/0:21,0:21:42:0,42,630 0/0:13,0:13:36:0,36,540 0/0:24,0:24:54:0,54,810 0/0:23,0:23:60:0,60,900 0/1:3,10:13:69:327,0,69 0/0:38,0:38:90:0,90,1350 0/0:44,0:44:99:0,99,1485 0/0:25,0:25:60:0,60,900 0/0:34,0:34:78:0,78,1170 0/0:23,0:23:42:0,42,630 0/0:26,0:26:63:0,63,945 0/0:21,0:21:60:0,60,900 0/0:14,0:14:33:0,33,495 0/0:23,0:23:57:0,57,855 0/0:14,0:14:39:0,39,585 0/0:16,0:16:42:0,42,630 0/0:40,0:40:99:0,99,1485 0/0:41,0:41:90:0,90,1350 0/1:34,25:59:99:632,0,969 0/0:31,0:31:66:0,66,990 0/0:20,0:20:42:0,42,630 0/0:23,0:23:63:0,63,945 0/0:11,0:11:30:0,30,450 0/0:22,0:22:60:0,60,900 0/0:13,0:13:18:0,18,270 0/0:40,0:40:90:0,90,1350 0/0:7,0:7:21:0,21,216 0/0:43,0:43:99:0,99,1485 0/0:39,0:39:99:0,99,1389 0/0:21,0:21:42:0,42,630 0/0:25,0:25:63:0,63,945 0/0:41,0:41:93:0,93,1395 0/0:24,0:24:63:0,63,945 0/0:35,0:35:99:0,99,1485 0/0:22,0:22:57:0,57,855 0/0:31,0:31:90:0,90,1350 0/0:25,0:25:54:0,54,810 0/0:17,0:17:39:0,39,585 0/0:25,0:25:60:0,60,900 0/0:18,0:18:48:0,48,720 0/0:27,0:27:60:0,60,900 0/0:29,0:29:72:0,72,1080 0/0:28,0:28:72:0,72,1080 0/0:38,0:38:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:37,0:37:99:0,102,1506 0/1:28,22:50:99:656,0,802 0/0:26,0:26:57:0,57,855 0/0:43,0:43:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:22,0:22:54:0,54,810 0/0:39,0:39:99:0,99,1485 0/0:29,0:29:72:0,72,1080 0/0:26,0:26:60:0,60,900 0/0:19,0:19:45:0,45,675 0/0:10,0:10:24:0,24,360 0/0:45,0:45:99:0,102,1530 0/0:41,0:41:99:0,102,1530 0/0:31,0:31:90:0,90,1350 0/0:17,0:17:42:0,42,630 0/0:16,0:16:36:0,36,540 0/0:22,0:22:60:0,60,900 0/0:41,0:41:99:0,102,1530 0/0:15,0:15:36:0,36,540 0/0:2,0:2:6:0,6,73 0/0:34,0:34:81:0,81,1215 0/0:44,0:44:99:0,102,1530 0/0:31,0:31:75:0,75,1125 0/0:28,0:28:81:0,81,1215 0/0:37,0:37:90:0,90,1350 0/0:40,0:40:99:0,99,1485 1 11850927 rs2274976 C T 2086.34 . AC=6;AF=0.030;AN=198;BaseQRankSum=2.20;ClippingRankSum=1.03;DB;DP=2084;FS=12.654;InbreedingCoeff=-0.0361;MLEAC=6;MLEAF=0.030;MQ=58.45;MQRankSum=-3.530e-01;QD=15.12;ReadPosRankSum=0.394;SOR=2.894 GT:AD:DP:GQ:PL 0/0:23,0:23:48:0,48,720 0/0:26,0:26:72:0,72,1080 0/0:38,0:38:90:0,90,1244 0/0:24,0:24:60:0,60,900 0/0:19,0:19:39:0,39,585 0/0:40,0:40:99:0,99,1485 0/0:18,0:18:45:0,45,675 0/0:17,0:17:48:0,48,720 0/0:14,0:14:39:0,39,585 0/0:23,0:23:54:0,54,810 0/0:20,0:20:54:0,54,810 0/0:14,0:14:33:0,33,495 0/0:4,0:4:12:0,12,135 0/0:20,0:20:51:0,51,765 0/0:8,0:8:18:0,18,270 0/0:17,0:17:42:0,42,630 0/0:13,0:13:33:0,33,495 0/0:19,0:19:42:0,42,630 0/0:30,0:30:19:0,19,878 0/0:24,0:24:41:0,41,764 0/0:18,0:18:45:0,45,675 0/0:37,0:37:99:0,99,1485 0/0:13,0:13:33:0,33,495 0/0:37,0:37:90:0,90,1350 0/0:18,0:18:42:0,42,630 0/0:33,0:33:84:0,84,1260 0/0:14,0:14:24:0,24,360 0/0:21,0:21:54:0,54,810 0/0:10,0:10:21:0,21,315 0/0:15,0:15:30:0,30,450 0/0:10,0:10:24:0,24,360 0/0:15,0:15:27:0,27,405 0/0:15,0:15:42:0,42,630 0/0:14,0:14:36:0,36,540 0/0:28,0:28:72:0,72,1080 0/0:34,0:34:25:0,25,957 0/1:13,9:22:99:283,0,395 0/1:19,9:28:99:226,0,572 0/0:16,0:16:39:0,39,585 0/0:15,0:15:42:0,42,630 0/0:19,0:19:45:0,45,675 0/0:17,0:17:42:0,42,630 0/0:17,0:17:33:0,33,495 0/0:12,0:12:27:0,27,405 0/0:21,0:21:60:0,60,900 0/1:14,28:42:99:855,0,305 0/0:25,0:25:63:0,63,945 0/0:41,0:41:99:0,99,1485 0/0:21,0:21:51:0,51,765 0/0:7,0:7:18:0,18,270 0/0:12,0:12:24:0,24,360 0/0:17,0:17:45:0,45,675 0/1:7,8:15:99:260,0,189 0/0:17,0:17:48:0,48,720 0/0:21,0:21:51:0,51,765 0/0:2,0:2:6:0,6,65 0/0:30,0:30:60:0,60,900 0/0:37,0:37:90:0,90,1350 0/0:7,0:7:18:0,18,270 0/0:17,0:17:36:0,36,540 0/0:28,0:28:54:0,54,810 0/0:25,0:25:60:0,60,900 0/0:16,0:16:27:0,27,405 0/0:16,0:16:48:0,48,577 0/0:20,0:20:42:0,42,630 0/0:25,0:25:45:0,45,675 0/0:8,0:8:21:0,21,315 0/0:13,0:13:36:0,36,540 0/0:14,0:14:30:0,30,450 0/0:17,0:17:48:0,48,720 0/0:18,0:18:42:0,42,630 0/1:9,9:18:99:262,0,249 0/0:25,0:25:48:0,48,720 0/0:28,0:28:45:0,45,675 0/0:28,0:28:72:0,72,864 0/0:32,0:32:81:0,81,1067 0/0:15,0:15:36:0,36,540 0/0:43,0:43:99:0,99,1485 0/0:31,0:31:75:0,75,1125 0/0:21,0:21:57:0,57,855 0/0:34,0:34:81:0,81,1215 0/0:17,0:17:45:0,45,675 0/0:21,0:21:24:0,24,679 0/0:15,0:15:39:0,39,585 0/0:7,0:7:15:0,15,225 0/0:45,0:45:99:0,102,1530 0/0:40,0:40:99:0,99,1468 0/0:21,0:21:51:0,51,765 0/0:7,0:7:21:0,21,238 0/1:4,9:13:99:313,0,105 0/0:13,0:13:30:0,30,450 0/0:43,0:43:99:0,99,1485 0/0:15,0:15:39:0,39,585 ./.:0,0:0 0/0:15,0:15:0:0,0,177 0/0:29,0:29:62:0,62,990 0/0:21,0:21:36:0,36,540 0/0:21,0:21:51:0,51,765 0/0:19,0:19:51:0,51,765 0/0:24,0:24:62:0,62,642 1 11850981 rs45622739 C T 132.05 . AC=1;AF=5.051e-03;AN=198;BaseQRankSum=2.59;ClippingRankSum=0.658;DB;DP=1244;FS=0.000;InbreedingCoeff=-0.0177;MLEAC=1;MLEAF=5.051e-03;MQ=57.77;MQRankSum=-2.190e-01;QD=6.95;ReadPosRankSum=1.18;SOR=0.223 GT:AD:DP:GQ:PL 0/0:19,0:19:42:0,42,630 0/0:25,0:25:54:0,54,810 0/0:18,0:18:39:0,39,585 0/0:9,0:9:27:0,27,315 0/0:13,0:13:33:0,33,495 0/0:21,0:21:48:0,48,720 0/0:10,0:10:18:0,18,270 0/0:13,0:13:36:0,36,540 0/0:8,0:8:24:0,24,295 0/0:10,0:10:9:0,9,135 0/0:13,0:13:33:0,33,495 0/0:11,0:11:15:0,15,225 0/0:1,0:1:3:0,3,29 0/0:11,0:11:24:0,24,360 0/0:4,0:4:9:0,9,135 0/0:12,0:12:30:0,30,450 0/0:14,0:14:30:0,30,450 0/0:8,0:8:15:0,15,225 0/0:18,0:18:36:0,36,540 0/0:18,0:18:42:0,42,630 0/0:14,0:14:33:0,33,495 0/0:19,0:19:48:0,48,720 0/0:10,0:10:27:0,27,405 0/0:21,0:21:48:0,48,720 0/0:10,0:10:24:0,24,360 0/0:25,0:25:42:0,42,630 0/0:12,0:12:27:0,27,405 0/0:20,0:20:45:0,45,675 0/0:3,0:3:9:0,9,109 0/0:8,0:8:24:0,24,305 0/0:6,0:6:12:0,12,180 0/0:15,0:15:27:0,27,405 0/0:10,0:10:24:0,24,360 0/0:9,0:9:18:0,18,270 0/0:18,0:18:42:0,42,630 0/0:22,0:22:42:0,42,630 0/0:6,0:6:15:0,15,225 0/0:12,0:12:24:0,24,360 0/0:10,0:10:18:0,18,270 0/0:8,0:8:15:0,15,225 0/0:8,0:8:15:0,15,225 0/0:3,0:3:6:0,6,90 0/0:9,0:9:21:0,21,315 0/0:2,0:2:3:0,3,45 0/0:8,0:8:21:0,21,315 0/0:16,0:16:27:0,27,405 0/0:14,0:14:33:0,33,495 0/0:20,0:20:39:0,39,585 0/0:12,0:12:15:0,15,225 0/0:8,0:8:21:0,21,315 0/0:10,0:10:18:0,18,270 0/0:11,0:11:21:0,21,315 0/0:7,0:7:18:0,18,270 0/0:11,0:11:30:0,30,450 0/0:14,0:14:36:0,36,540 0/0:1,0:1:3:0,3,34 0/0:22,0:22:42:0,42,630 0/0:25,0:25:39:0,39,585 0/0:6,0:6:18:0,18,228 0/0:11,0:11:30:0,30,450 0/0:16,0:16:39:0,39,585 0/0:13,0:13:24:0,24,360 0/0:12,0:12:24:0,24,360 0/0:6,0:6:18:0,18,209 0/0:17,0:17:45:0,45,675 0/0:11,0:11:24:0,24,360 0/0:10,0:10:27:0,27,405 0/0:14,0:14:30:0,30,450 0/0:13,0:13:30:0,30,450 0/0:10,0:10:24:0,24,360 0/0:8,0:8:18:0,18,270 0/0:8,0:8:21:0,21,315 0/0:24,0:24:57:0,57,855 0/0:23,0:23:57:0,57,855 0/0:12,0:12:24:0,24,360 0/0:11,0:11:30:0,30,450 0/0:11,0:11:21:0,21,315 0/0:43,0:43:84:0,84,1260 0/0:15,0:15:33:0,33,495 0/0:12,0:12:27:0,27,405 0/0:13,0:13:33:0,33,495 0/0:9,0:9:18:0,18,270 0/0:13,0:13:24:0,24,360 0/0:9,0:9:9:0,9,135 0/0:7,0:7:15:0,15,225 0/0:35,0:35:72:0,72,1080 0/0:14,0:14:33:0,33,495 0/0:17,0:17:33:0,33,495 0/0:2,0:2:6:0,6,71 0/0:8,0:8:15:0,15,225 0/0:8,0:8:21:0,21,315 0/0:16,0:16:24:0,24,360 0/0:5,0:5:15:0,15,181 ./.:0,0:0 0/0:16,0:16:30:0,30,450 0/1:13,6:19:99:174,0,327 0/0:7,0:7:15:0,15,225 0/0:9,0:9:18:0,18,270 0/0:11,0:11:24:0,24,360 0/0:5,0:5:12:0,12,180 1 11851002 . A ACACAT 324.75 . AC=1;AF=5.263e-03;AN=190;BaseQRankSum=-2.141e+00;ClippingRankSum=-1.099e+00;DP=1048;FS=0.000;InbreedingCoeff=-0.0341;MLEAC=1;MLEAF=5.263e-03;MQ=48.09;MQRankSum=-3.298e+00;QD=21.65;ReadPosRankSum=-1.331e+00;SOR=0.582 GT:AD:DP:GQ:PGT:PID:PL 0/0:11,0:11:21:.:.:0,21,315 0/0:18,0:18:48:.:.:0,48,720 0/0:17,0:17:39:.:.:0,39,585 0/0:8,0:8:15:.:.:0,15,225 0/0:14,0:14:21:.:.:0,21,315 0/0:18,0:18:45:.:.:0,45,675 0/0:9,0:9:21:.:.:0,21,315 0/0:12,0:12:33:.:.:0,33,495 0/0:10,0:10:15:.:.:0,15,225 ./.:4,0:4 0/0:12,0:12:15:.:.:0,15,225 0/0:7,0:7:9:.:.:0,9,135 0/0:1,0:1:3:.:.:0,3,29 0/0:9,0:9:27:.:.:0,27,327 0/0:7,0:7:21:.:.:0,21,256 0/0:10,0:10:0:.:.:0,0,236 0/0:8,0:8:18:.:.:0,18,270 0/0:8,0:8:12:.:.:0,12,180 0/0:13,0:13:36:.:.:0,36,540 0/0:12,0:12:15:.:.:0,15,225 0/0:13,0:13:39:.:.:0,39,446 0/0:15,0:15:42:.:.:0,42,630 0/0:9,0:9:21:.:.:0,21,315 0/0:14,0:14:39:.:.:0,39,585 0/0:9,0:9:21:.:.:0,21,315 0/1:8,7:15:99:0|1:11851002_A_ACACAT:366,0,490 0/0:6,0:6:9:.:.:0,9,135 0/0:13,0:13:24:.:.:0,24,360 0/0:4,0:4:12:.:.:0,12,147 0/0:14,0:14:36:.:.:0,36,540 0/0:4,0:4:9:.:.:0,9,135 0/0:7,0:7:21:.:.:0,21,252 0/0:7,0:7:15:.:.:0,15,225 0/0:7,0:7:15:.:.:0,15,225 0/0:16,0:16:45:.:.:0,45,675 0/0:10,0:10:24:.:.:0,24,360 0/0:10,0:10:19:.:.:0,19,313 0/0:14,0:14:36:.:.:0,36,540 0/0:5,0:5:15:.:.:0,15,179 0/0:8,0:8:24:.:.:0,24,302 0/0:8,0:8:0:.:.:0,0,211 0/0:1,0:1:3:.:.:0,3,29 0/0:5,0:5:9:.:.:0,9,135 0/0:4,0:4:12:.:.:0,12,146 0/0:10,0:10:21:.:.:0,21,315 0/0:15,0:15:30:.:.:0,30,450 0/0:10,0:10:24:.:.:0,24,360 0/0:16,0:16:42:.:.:0,42,630 0/0:10,0:10:24:.:.:0,24,360 0/0:8,0:8:15:.:.:0,15,225 0/0:10,0:10:18:.:.:0,18,270 ./.:9,0:9 0/0:9,0:9:15:.:.:0,15,225 0/0:8,0:8:15:.:.:0,15,225 0/0:10,0:10:15:.:.:0,15,225 ./.:0,0:0 0/0:19,0:19:33:.:.:0,33,495 0/0:20,0:20:45:.:.:0,45,675 0/0:10,0:10:24:.:.:0,24,360 0/0:11,0:11:30:.:.:0,30,450 0/0:17,0:17:30:.:.:0,30,450 0/0:10,0:10:30:.:.:0,30,363 0/0:8,0:8:0:.:.:0,0,228 0/0:8,0:8:21:.:.:0,21,315 0/0:14,0:14:36:.:.:0,36,540 0/0:9,0:9:0:.:.:0,0,266 ./.:11,0:11 0/0:11,0:11:33:.:.:0,33,397 0/0:10,0:10:24:.:.:0,24,360 0/0:6,0:6:12:.:.:0,12,180 0/0:11,0:11:21:.:.:0,21,315 0/0:9,0:9:15:.:.:0,15,225 0/0:20,0:20:45:.:.:0,45,675 0/0:19,0:19:48:.:.:0,48,720 0/0:8,0:8:21:.:.:0,21,315 0/0:12,0:12:33:.:.:0,33,495 0/0:7,0:7:15:.:.:0,15,225 0/0:33,0:33:83:.:.:0,83,1258 0/0:13,0:13:33:.:.:0,33,495 0/0:18,0:18:45:.:.:0,45,675 0/0:19,0:19:42:.:.:0,42,630 0/0:7,0:7:15:.:.:0,15,225 0/0:8,0:8:18:.:.:0,18,270 0/0:6,0:6:18:.:.:0,18,209 0/0:4,0:4:9:.:.:0,9,135 0/0:33,0:33:69:.:.:0,69,1035 0/0:19,0:19:48:.:.:0,48,720 0/0:8,0:8:18:.:.:0,18,270 0/0:2,0:2:6:.:.:0,6,80 0/0:5,0:5:9:.:.:0,9,135 0/0:8,0:8:12:.:.:0,12,180 0/0:12,0:12:33:.:.:0,33,495 0/0:7,0:7:21:.:.:0,21,257 ./.:0,0:0 0/0:11,0:11:24:.:.:0,24,360 0/0:17,0:17:16:.:.:0,16,519 0/0:7,0:7:0:.:.:0,0,117 0/0:9,0:9:27:.:.:0,27,324 0/0:8,0:8:18:.:.:0,18,270 0/0:3,0:3:3:.:.:0,3,45 1 11851003 rs3818762 G C,GCACACACACACAC 6288.72 . AC=31,1;AF=0.178,5.747e-03;AN=174;BaseQRankSum=0.741;ClippingRankSum=0.00;DB;DP=1028;FS=1.346;InbreedingCoeff=0.1117;MLEAC=34,1;MLEAF=0.195,5.747e-03;MQ=60.00;MQRankSum=0.536;QD=20.09;ReadPosRankSum=0.106;SOR=1.070 GT:AD:DP:GQ:PGT:PID:PL 0/0:12,0,0:12:0:.:.:0,0,228,0,228,228 0/0:16,0,0:16:42:.:.:0,42,630,42,630,630 0/1:11,4,0:15:97:.:.:97,0,321,130,333,462 0/0:8,0,0:8:15:.:.:0,15,225,15,225,225 0/1:7,7,0:14:99:.:.:232,0,194,253,215,468 0/0:18,0,0:18:45:.:.:0,45,675,45,675,675 ./.:9,0,0:9 0/0:11,0,0:11:30:.:.:0,30,450,30,450,450 0/1:4,5,0:9:99:.:.:166,0,116,178,131,309 ./.:4,0,0:4 0/1:2,11,0:13:42:.:.:371,0,42,377,76,453 0/0:7,0,0:7:0:.:.:0,0,42,0,42,42 ./.:1,0,0:1 0/0:9,0,0:9:27:.:.:0,27,327,27,327,327 0/0:7,0,0:7:0:.:.:0,0,1,0,1,1 1/1:0,8,0:8:24:.:.:269,24,0,269,24,269 0/0:9,0,0:9:21:.:.:0,21,315,21,315,315 ./.:8,0,0:8 0/0:13,0,0:13:7:.:.:0,7,413,7,413,413 0/0:11,0,0:11:3:.:.:0,3,315,3,315,315 0/0:13,0,0:13:39:.:.:0,39,446,39,446,446 0/0:15,0,0:15:42:.:.:0,42,630,42,630,630 0/0:9,0,0:9:21:.:.:0,21,315,21,315,315 0/0:14,0,0:14:39:.:.:0,39,585,39,585,585 0/0:9,0,0:9:21:.:.:0,21,315,21,315,315 0/2:8,0,9:17:99:0|1:11851002_A_ACACAT:365,390,910,0,520,490 0/0:6,0,0:6:0:.:.:0,0,81,0,81,81 0/0:13,0,0:13:24:.:.:0,24,360,24,360,360 0/0:4,0,0:4:12:.:.:0,12,147,12,147,147 0/0:14,0,0:14:36:.:.:0,36,540,36,540,540 ./.:4,0,0:4 0/0:7,0,0:7:21:.:.:0,21,252,21,252,252 0/0:7,0,0:7:15:.:.:0,15,225,15,225,225 0/0:7,0,0:7:15:.:.:0,15,225,15,225,225 0/1:7,9,0:16:99:.:.:316,0,229,337,256,593 0/0:11,0,0:11:0:.:.:0,0,163,0,163,163 0/1:4,6,0:10:99:.:.:195,0,120,207,139,346 0/1:8,4,0:12:99:.:.:116,0,271,140,283,423 ./.:5,0,0:5 0/1:4,5,0:9:99:.:.:163,0,130,175,145,320 1/1:0,7,0:7:21:.:.:240,21,0,240,21,240 0/0:1,0,0:1:3:.:.:0,3,29,3,29,29 0/0:5,0,0:5:9:.:.:0,9,135,9,135,135 0/0:4,0,0:4:0:.:.:0,0,70,0,70,70 0/1:5,6,0:11:99:.:.:199,0,157,214,175,389 0/0:15,0,0:15:0:.:.:0,0,209,0,209,209 0/0:10,0,0:10:21:.:.:0,21,315,21,315,315 0/0:16,0,0:16:42:.:.:0,42,630,42,630,630 0/0:10,0,0:10:24:.:.:0,24,360,24,360,360 0/0:7,0,0:7:0:.:.:0,0,119,0,119,119 0/0:6,0,0:6:15:.:.:0,15,225,15,225,225 ./.:9,0,0:9 0/1:2,7,0:9:43:.:.:244,0,43,250,64,314 0/0:8,0,0:8:0:.:.:0,0,148,0,148,148 0/0:10,0,0:10:15:.:.:0,15,225,15,225,225 ./.:0,0,0:0 0/1:10,8,0:18:99:.:.:235,0,266,265,290,555 0/1:12,4,0:16:99:.:.:110,0,409,146,421,567 0/0:11,0,0:11:27:.:.:0,27,405,27,405,405 1/1:0,11,0:11:33:.:.:407,33,0,407,33,407 0/1:5,12,0:17:99:.:.:380,0,122,395,158,553 0/1:4,5,0:9:99:.:.:167,0,117,179,132,311 1/1:0,6,0:6:18:.:.:239,18,0,239,18,239 0/0:7,0,0:7:0:.:.:0,0,31,0,31,31 0/0:14,0,0:14:36:.:.:0,36,540,36,540,540 1/1:0,10,0:10:30:.:.:373,30,0,373,30,373 ./.:11,0,0:11 0/1:6,5,0:11:99:.:.:142,0,194,160,209,369 0/1:4,5,0:9:99:.:.:161,0,124,173,139,312 0/0:6,0,0:6:0:.:.:0,0,83,0,83,83 0/1:4,7,0:11:99:.:.:235,0,119,247,140,387 ./.:9,0,0:9 0/0:20,0,0:20:45:.:.:0,45,675,45,675,675 0/0:19,0,0:19:48:.:.:0,48,720,48,720,720 0/0:8,0,0:8:21:.:.:0,21,315,21,315,315 0/0:12,0,0:12:0:.:.:0,0,23,0,23,23 0/0:7,0,0:7:0:.:.:0,0,43,0,43,43 0/0:33,0,0:33:58:.:.:0,58,1106,58,1106,1106 0/1:2,12,0:14:30:.:.:417,0,30,423,67,489 0/0:18,0,0:18:45:.:.:0,45,675,45,675,675 0/0:20,0,0:20:20:.:.:0,20,662,20,662,662 ./.:7,0,0:7 0/0:7,0,0:7:21:.:.:0,21,262,21,262,262 0/0:6,0,0:6:18:.:.:0,18,226,18,226,226 ./.:4,0,0:4 0/0:33,0,0:33:69:.:.:0,69,1035,69,1035,1035 0/0:20,0,0:20:51:.:.:0,51,765,51,765,765 0/0:8,0,0:8:15:.:.:0,15,225,15,225,225 0/0:2,0,0:2:6:.:.:0,6,80,6,80,80 0/0:4,0,0:4:0:.:.:0,0,4,0,4,4 0/1:1,6,0:7:20:.:.:184,0,20,187,38,225 0/0:10,0,0:10:30:.:.:0,30,381,30,381,381 0/0:7,0,0:7:21:.:.:0,21,257,21,257,257 ./.:0,0,0:0 0/1:4,6,0:10:99:.:.:176,0,111,188,129,316 0/1:4,10,0:14:99:.:.:311,0,114,323,144,467 0/0:7,0,0:7:0:.:.:0,0,117,0,117,117 0/0:9,0,0:9:27:.:.:0,27,324,27,324,324 0/0:7,0,0:7:21:.:.:0,21,268,21,268,268 0/0:3,0,0:3:3:.:.:0,3,45,3,45,45 1 11851118 rs7518348 A G 9167.83 . AC=80;AF=1.00;AN=80;BaseQRankSum=0.751;ClippingRankSum=-7.510e-01;DB;DP=441;FS=0.000;InbreedingCoeff=-0.0121;MLEAC=80;MLEAF=1.00;MQ=60.00;MQRankSum=0.751;QD=34.21;ReadPosRankSum=-7.510e-01;SOR=2.020 GT:AD:DP:GQ:PL 1/1:0,5:5:15:152,15,0 ./.:3,0:3 ./.:4,0:4 1/1:0,6:6:18:216,18,0 1/1:0,11:11:33:365,33,0 ./.:5,0:5 ./.:2,0:2 ./.:5,0:5 1/1:0,5:5:15:190,15,0 ./.:1,0:1 ./.:3,0:3 ./.:4,0:4 ./.:1,0:1 1/1:0,4:4:12:136,12,0 1/1:0,4:4:12:134,12,0 ./.:2,0:2 1/1:0,4:4:12:150,12,0 ./.:1,0:1 1/1:0,6:6:18:228,18,0 1/1:0,4:4:12:140,12,0 1/1:0,7:7:21:246,21,0 ./.:1,0:1 ./.:3,0:3 1/1:0,10:10:30:352,30,0 ./.:4,0:4 ./.:3,0:3 ./.:7,0:7 ./.:1,0:1 ./.:3,0:3 ./.:3,0:3 ./.:2,0:2 ./.:3,0:3 1/1:0,4:4:12:124,12,0 1/1:0,5:5:15:174,15,0 ./.:3,0:3 1/1:0,9:9:27:325,27,0 1/1:0,8:8:24:293,24,0 1/1:0,9:9:27:312,27,0 1/1:0,5:5:15:180,15,0 ./.:4,0:4 ./.:2,0:2 1/1:0,4:4:12:152,12,0 ./.:3,0:3 ./.:2,0:2 ./.:0,0:0 1/1:0,4:4:12:142,12,0 1/1:1,8:9:17:250,17,0 1/1:0,7:7:21:216,21,0 ./.:4,0:4 ./.:2,0:2 ./.:3,0:3 ./.:3,0:3 ./.:4,0:4 ./.:2,0:2 ./.:2,0:2 ./.:2,0:2 1/1:0,5:5:15:170,15,0 ./.:6,0:6 ./.:3,0:3 1/1:0,7:7:21:263,21,0 1/1:0,7:7:21:228,21,0 ./.:4,0:4 ./.:3,0:3 ./.:2,0:2 1/1:0,6:6:18:202,18,0 ./.:2,0:2 ./.:3,0:3 ./.:3,0:3 ./.:5,0:5 ./.:0,0:0 1/1:0,5:5:15:181,15,0 ./.:4,0:4 1/1:0,7:7:21:262,21,0 1/1:0,7:7:21:244,21,0 1/1:0,5:5:15:167,15,0 1/1:0,8:8:24:281,24,0 ./.:3,0:3 1/1:0,14:14:42:463,42,0 1/1:0,6:6:18:184,18,0 1/1:0,5:5:15:186,15,0 1/1:0,6:6:18:219,18,0 1/1:0,5:5:15:175,15,0 1/1:0,6:6:18:209,18,0 ./.:2,0:2 ./.:2,0:2 1/1:0,14:14:42:440,42,0 1/1:0,16:16:48:537,48,0 ./.:3,0:3 ./.:2,0:2 ./.:2,0:2 ./.:1,0:1 ./.:3,0:3 ./.:5,0:5 ./.:1,0:1 1/1:0,5:5:15:174,15,0 ./.:3,0:3 ./.:3,0:3 1/1:0,4:4:12:128,12,0 ./.:3,0:3 ./.:2,0:2 1 11851185 rs55686944 C T 349.61 . AC=2;AF=0.010;AN=192;BaseQRankSum=0.00;ClippingRankSum=-2.710e-01;DB;DP=706;FS=3.188;InbreedingCoeff=-0.0703;MLEAC=2;MLEAF=0.010;MQ=60.00;MQRankSum=0.817;QD=13.98;ReadPosRankSum=1.24;SOR=1.863 GT:AD:DP:GQ:PL 0/0:4,0:4:12:0,12,158 0/0:12,0:12:0:0,0,394 0/0:13,0:13:0:0,0,399 0/0:9,0:9:27:0,27,339 0/0:10,0:10:30:0,30,363 0/0:14,0:14:36:0,36,540 0/0:1,0:1:3:0,3,37 0/0:5,0:5:6:0,6,90 0/0:5,0:5:15:0,15,182 0/0:3,0:3:9:0,9,99 0/0:5,0:5:12:0,12,180 0/0:4,0:4:9:0,9,135 ./.:0,0:0 0/0:6,0:6:15:0,15,225 0/0:2,0:2:6:0,6,62 0/0:3,0:3:9:0,9,107 0/0:10,0:10:0:0,0,18 0/0:13,0:13:33:0,33,495 0/0:5,0:5:12:0,12,180 0/0:6,0:6:18:0,18,225 0/0:5,0:5:12:0,12,180 0/1:8,5:13:99:145,0,251 0/0:5,0:5:12:0,12,180 0/0:19,0:19:45:0,45,675 0/0:8,0:8:24:0,24,319 0/0:23,0:23:60:0,60,900 0/0:6,0:6:9:0,9,135 0/0:4,0:4:12:0,12,131 0/0:7,0:7:18:0,18,270 0/0:4,0:4:12:0,12,134 0/0:5,0:5:12:0,12,180 0/0:8,0:8:24:0,24,237 0/0:2,0:2:6:0,6,68 0/0:3,0:3:9:0,9,110 0/0:5,0:5:15:0,15,195 0/0:13,0:13:28:0,28,445 0/0:8,0:8:12:0,12,251 0/0:4,0:4:12:0,12,146 0/0:3,0:3:9:0,9,111 0/0:5,0:5:12:0,12,180 0/0:5,0:5:15:0,15,152 ./.:2,0:2 0/0:2,0:2:3:0,3,45 0/0:2,0:2:3:0,3,45 0/0:3,0:3:9:0,9,109 0/0:6,0:6:18:0,18,224 0/0:8,0:8:21:0,21,315 0/0:16,0:16:45:0,45,675 0/0:10,0:10:18:0,18,270 0/0:1,0:1:3:0,3,34 0/0:6,0:6:0:0,0,133 0/0:4,0:4:12:0,12,139 0/0:5,0:5:6:0,6,90 0/0:11,0:11:24:0,24,360 0/0:9,0:9:0:0,0,175 0/0:1,0:1:3:0,3,29 0/0:8,0:8:24:0,24,272 0/0:17,0:17:45:0,45,675 0/0:4,0:4:12:0,12,129 0/0:3,0:3:3:0,3,45 0/0:9,0:9:24:0,24,360 0/0:8,0:8:18:0,18,270 0/0:6,0:6:15:0,15,225 0/0:1,0:1:3:0,3,31 0/0:7,0:7:21:0,21,259 0/0:8,0:8:21:0,21,315 0/0:5,0:5:15:0,15,184 0/0:6,0:6:18:0,18,213 0/0:5,0:5:0:0,0,39 0/0:3,0:3:6:0,6,90 0/0:6,0:6:12:0,12,180 0/0:8,0:8:12:0,12,180 0/0:11,0:11:33:0,33,410 0/0:17,0:17:42:0,42,630 0/0:10,0:10:27:0,27,405 0/0:12,0:12:33:0,33,495 0/0:5,0:5:15:0,15,197 0/0:20,0:20:51:0,51,765 0/0:10,0:10:21:0,21,315 0/0:7,0:7:18:0,18,270 0/1:4,8:12:99:261,0,113 0/0:3,0:3:9:0,9,101 0/0:2,0:2:6:0,6,77 0/0:4,0:4:12:0,12,137 0/0:2,0:2:6:0,6,80 0/0:28,0:28:45:0,45,953 0/0:7,0:7:0:0,0,32 0/0:12,0:12:33:0,33,495 0/0:1,0:1:3:0,3,35 ./.:0,0:0 0/0:11,0:11:33:0,33,407 0/0:19,0:19:48:0,48,720 0/0:2,0:2:6:0,6,71 ./.:0,0:0 0/0:11,0:11:33:0,33,407 0/0:5,0:5:0:0,0,130 0/0:4,0:4:9:0,9,135 0/0:5,0:5:12:0,12,180 0/0:9,0:9:27:0,27,340 0/0:2,0:2:6:0,6,62 1 11852300 rs1476413 C T 16012.60 . AC=53;AF=0.270;AN=196;BaseQRankSum=1.06;ClippingRankSum=0.410;DB;DP=1841;FS=0.000;InbreedingCoeff=-0.0900;MLEAC=55;MLEAF=0.281;MQ=59.11;MQRankSum=0.198;QD=18.43;ReadPosRankSum=-1.760e-01;SOR=2.167 GT:AD:DP:GQ:PL 0/1:11,7:18:99:197,0,363 0/0:32,0:32:72:0,72,1080 0/1:15,19:34:99:564,0,425 0/0:26,0:26:72:0,72,1080 0/1:15,9:24:99:269,0,478 0/0:23,0:23:57:0,57,855 0/1:6,7:13:99:221,0,185 0/0:15,0:15:33:0,33,495 0/1:12,8:20:99:247,0,393 0/0:22,0:22:60:0,60,900 0/1:7,3:10:89:89,0,206 0/1:5,5:10:99:166,0,155 ./.:0,0:0 0/0:17,0:17:42:0,42,630 0/1:4,10:14:77:320,0,77 1/1:0,12:12:36:455,36,0 0/0:14,0:14:33:0,33,495 0/1:2,10:12:36:341,0,36 0/0:25,0:25:34:0,34,848 0/0:13,0:13:21:0,21,315 0/0:15,0:15:30:0,30,450 0/0:21,0:21:0:0,0,613 0/0:9,0:9:18:0,18,270 0/0:41,0:41:93:0,93,1395 0/0:5,0:5:12:0,12,180 0/1:21,25:46:99:659,0,557 0/1:6,6:12:99:199,0,195 0/0:19,0:19:45:0,45,675 0/0:12,0:12:33:0,33,495 0/0:14,0:14:36:0,36,540 0/1:2,5:7:56:160,0,56 0/0:10,0:10:18:0,18,270 0/0:5,0:5:15:0,15,187 0/0:9,0:9:24:0,24,360 0/1:10,17:27:99:568,0,284 0/1:24,25:49:99:760,0,736 0/1:6,9:15:99:303,0,188 0/1:13,14:27:99:425,0,409 0/1:6,10:16:99:325,0,188 0/1:10,7:17:99:185,0,331 1/1:0,8:8:24:306,24,0 0/0:5,0:5:12:0,12,180 0/0:21,0:21:48:0,48,720 0/1:4,6:10:99:200,0,112 0/1:11,5:16:99:151,0,366 0/1:11,16:27:99:523,0,331 0/0:21,0:21:51:0,51,765 0/0:37,0:37:74:0,74,1317 0/0:21,0:21:42:0,42,630 0/1:5,6:11:99:189,0,141 0/0:11,0:11:24:0,24,360 0/0:13,0:13:0:0,0,170 0/1:8,7:15:99:222,0,220 0/1:8,10:18:99:317,0,231 0/0:20,0:20:51:0,51,765 0/0:1,0:1:3:0,3,29 0/1:25,22:47:99:706,0,748 0/0:41,0:41:99:0,100,1328 0/0:11,0:11:27:0,27,405 1/1:0,15:15:45:580,45,0 0/1:9,7:16:99:235,0,292 0/1:9,9:18:99:278,0,272 1/1:0,26:26:78:982,78,0 0/0:4,0:4:12:0,12,136 0/0:9,0:9:24:0,24,360 1/1:0,22:22:66:827,66,0 0/1:6,6:12:99:190,0,166 0/1:6,7:13:99:225,0,183 0/1:2,9:11:38:297,0,38 0/1:2,6:8:52:206,0,52 0/1:8,8:16:99:218,0,246 0/1:6,9:15:99:303,0,169 0/0:24,0:24:57:0,57,855 0/0:29,0:29:72:0,72,1017 0/0:19,0:19:19:0,19,573 0/1:14,11:25:99:329,0,441 0/0:10,0:10:0:0,0,254 0/0:42,0:42:99:0,99,1485 0/1:3,19:22:43:676,0,43 0/0:11,0:11:33:0,33,399 0/0:25,0:25:60:0,60,900 1/1:0,18:18:54:622,54,0 0/0:22,0:22:60:0,60,900 0/0:12,0:12:24:0,24,360 0/1:2,4:6:53:128,0,53 0/0:64,0:64:76:0,76,2096 0/0:32,0:32:72:0,72,1080 0/0:14,0:14:33:0,33,495 0/0:9,0:9:24:0,24,360 0/1:9,4:13:99:115,0,297 0/1:6,6:12:99:200,0,188 0/0:30,0:30:81:0,81,1215 0/0:12,0:12:27:0,27,405 ./.:0,0:0 0/1:7,6:13:99:185,0,222 0/1:16,13:29:99:374,0,496 0/1:12,12:24:99:349,0,350 0/0:19,0:19:39:0,39,585 0/0:24,0:24:60:0,60,880 0/0:3,0:3:9:0,9,98 1 11852516 rs17375901 C T 2397.28 . AC=12;AF=0.062;AN=194;BaseQRankSum=-8.310e-01;ClippingRankSum=0.00;DB;DP=1249;FS=0.000;InbreedingCoeff=0.0576;MLEAC=12;MLEAF=0.062;MQ=57.05;MQRankSum=0.200;QD=14.80;ReadPosRankSum=0.198;SOR=0.718 GT:AD:DP:GQ:PL 0/0:7,0:7:21:0,21,248 0/0:20,0:20:45:0,45,675 0/0:18,0:18:15:0,15,536 0/0:12,0:12:27:0,27,405 0/1:14,4:18:99:99,0,493 0/0:22,0:22:57:0,57,855 0/0:9,0:9:21:0,21,315 0/0:11,0:11:30:0,30,450 0/0:6,0:6:0:0,0,9 0/0:3,0:3:0:0,0,43 0/0:11,0:11:24:0,24,360 0/0:9,0:9:24:0,24,360 ./.:0,0:0 0/0:16,0:16:42:0,42,630 0/1:2,6:8:33:187,0,33 1/1:0,14:14:42:530,42,0 0/0:14,0:14:39:0,39,585 0/1:8,5:13:99:149,0,247 0/0:23,0:23:57:0,57,855 0/0:1,0:1:3:0,3,28 0/0:18,0:18:42:0,42,630 0/0:18,0:18:36:0,36,540 0/0:6,0:6:15:0,15,225 0/0:31,0:31:57:0,57,855 0/0:7,0:7:21:0,21,284 0/0:15,0:15:24:0,24,360 0/0:9,0:9:24:0,24,360 0/0:8,0:8:18:0,18,270 0/0:4,0:4:9:0,9,135 0/0:6,0:6:18:0,18,217 0/0:7,0:7:15:0,15,225 0/0:7,0:7:18:0,18,270 0/0:12,0:12:33:0,33,495 0/0:3,0:3:9:0,9,105 0/1:8,11:19:99:350,0,260 0/0:21,0:21:54:0,54,810 0/0:19,0:19:51:0,51,765 0/0:14,0:14:33:0,33,495 0/0:14,0:14:30:0,30,450 0/0:13,0:13:30:0,30,450 0/0:6,0:6:18:0,18,193 0/0:6,0:6:15:0,15,225 0/0:12,0:12:33:0,33,495 0/1:2,5:7:48:170,0,48 0/0:7,0:7:21:0,21,239 0/0:19,0:19:45:0,45,675 0/0:12,0:12:30:0,30,450 0/0:21,0:21:45:0,45,675 0/0:10,0:10:27:0,27,405 0/0:8,0:8:24:0,24,277 0/0:8,0:8:18:0,18,270 0/1:8,5:13:99:156,0,276 0/0:12,0:12:33:0,33,495 0/0:6,0:6:15:0,15,225 0/0:10,0:10:30:0,30,369 ./.:0,0:0 0/1:13,9:22:99:260,0,419 0/0:23,0:23:57:0,57,855 0/0:8,0:8:18:0,18,270 0/0:17,0:17:39:0,39,585 0/0:11,0:11:0:0,0,185 0/0:16,0:16:36:0,36,540 0/0:13,0:13:33:0,33,495 0/0:6,0:6:18:0,18,230 0/0:4,0:4:9:0,9,135 0/0:15,0:15:39:0,39,585 0/0:10,0:10:24:0,24,360 0/0:6,0:6:12:0,12,180 0/0:13,0:13:27:0,27,405 0/0:5,0:5:9:0,9,135 0/0:10,0:10:0:0,0,303 0/0:12,0:12:33:0,33,495 0/0:14,0:14:33:0,33,495 0/0:24,0:24:57:0,57,855 0/0:19,0:19:36:0,36,540 0/1:10,7:17:99:197,0,327 0/0:17,0:17:48:0,48,720 0/0:42,0:42:99:0,102,1530 0/0:18,0:18:54:0,54,611 0/0:7,0:7:18:0,18,270 0/0:22,0:22:54:0,54,810 0/0:15,0:15:39:0,39,585 0/0:9,0:9:27:0,27,345 0/0:13,0:13:33:0,33,495 0/0:2,0:2:6:0,6,69 0/0:41,0:41:49:0,49,1434 0/0:15,0:15:33:0,33,495 0/0:21,0:21:48:0,48,720 0/0:4,0:4:12:0,12,151 0/0:10,0:10:30:0,30,371 0/1:4,4:8:99:124,0,135 0/0:25,0:25:58:0,58,844 0/0:2,0:2:6:0,6,77 ./.:1,0:1 0/0:10,0:10:27:0,27,405 0/1:11,12:23:99:350,0,325 0/0:14,0:14:36:0,36,540 0/0:6,0:6:18:0,18,208 0/0:10,0:10:18:0,18,270 0/0:6,0:6:18:0,18,179 1 11854098 . G T 57.19 . AC=1;AF=5.000e-03;AN=200;BaseQRankSum=0.410;ClippingRankSum=-6.340e-01;DP=888;FS=13.172;InbreedingCoeff=-0.0277;MLEAC=1;MLEAF=5.000e-03;MQ=58.99;MQRankSum=0.783;QD=2.49;ReadPosRankSum=-1.677e+00;SOR=0.593 GT:AD:DP:GQ:PL 0/0:6,0:6:15:0,15,225 0/0:16,0:16:36:0,36,540 0/0:12,0:12:27:0,27,405 0/0:12,0:12:30:0,30,450 0/0:12,0:12:24:0,24,360 0/0:11,0:11:18:0,18,270 0/0:5,0:5:12:0,12,180 0/0:4,0:4:12:0,12,128 0/0:3,0:3:6:0,6,90 0/0:9,0:9:24:0,24,360 0/0:6,0:6:18:0,18,216 0/0:6,0:6:18:0,18,227 0/0:2,0:2:6:0,6,69 0/0:6,0:6:18:0,18,234 0/0:6,0:6:18:0,18,202 0/0:8,0:8:24:0,24,287 0/0:6,0:6:15:0,15,225 0/0:13,0:13:24:0,24,360 0/0:21,0:21:42:0,42,630 0/0:35,0:35:90:0,90,1350 0/0:9,0:9:27:0,27,341 0/0:10,0:10:21:0,21,315 0/0:8,0:8:21:0,21,315 0/0:14,0:14:36:0,36,540 0/0:13,0:13:27:0,27,405 0/1:18,5:23:99:99,0,536 0/0:4,0:4:12:0,12,145 0/0:6,0:6:15:0,15,225 0/0:7,0:7:21:0,21,246 0/0:6,0:6:18:0,18,220 0/0:4,0:4:9:0,9,135 0/0:5,0:5:12:0,12,180 0/0:5,0:5:15:0,15,186 0/0:1,0:1:3:0,3,35 0/0:7,0:7:15:0,15,225 0/0:13,0:13:36:0,36,540 0/0:6,0:6:15:0,15,225 0/0:9,0:9:27:0,27,340 0/0:7,0:7:18:0,18,270 0/0:8,0:8:11:0,11,240 0/0:6,0:6:15:0,15,225 0/0:4,0:4:9:0,9,135 0/0:4,0:4:9:0,9,135 0/0:6,0:6:18:0,18,218 0/0:4,0:4:6:0,6,90 0/0:8,0:8:21:0,21,315 0/0:8,0:8:18:0,18,270 0/0:16,0:16:36:0,36,540 0/0:10,0:10:24:0,24,360 0/0:4,0:4:9:0,9,135 0/0:4,0:4:12:0,12,152 0/0:5,0:5:15:0,15,181 0/0:5,0:5:15:0,15,176 0/0:5,0:5:15:0,15,183 0/0:13,0:13:36:0,36,540 0/0:3,0:3:9:0,9,99 0/0:14,0:14:30:0,30,450 0/0:18,0:18:42:0,42,630 0/0:2,0:2:6:0,6,62 0/0:4,0:4:12:0,12,140 0/0:11,0:11:30:0,30,450 0/0:5,0:5:12:0,12,180 0/0:5,0:5:15:0,15,164 0/0:3,0:3:9:0,9,112 0/0:5,0:5:12:0,12,180 0/0:7,0:7:12:0,12,180 0/0:5,0:5:9:0,9,135 0/0:3,0:3:9:0,9,104 0/0:6,0:6:18:0,18,206 0/0:4,0:4:12:0,12,146 0/0:7,0:7:8:0,8,211 0/0:6,0:6:15:0,15,225 0/0:14,0:14:30:0,30,450 0/0:10,0:10:30:0,30,377 0/0:11,0:11:21:0,21,315 0/0:10,0:10:30:0,30,386 0/0:6,0:6:18:0,18,222 0/0:39,0:39:93:0,93,1395 0/0:15,0:15:30:0,30,450 0/0:5,0:5:15:0,15,185 0/0:18,0:18:45:0,45,675 0/0:8,0:8:24:0,24,274 0/0:12,0:12:24:0,24,360 0/0:7,0:7:18:0,18,270 0/0:1,0:1:3:0,3,39 0/0:27,0:27:60:0,60,900 0/0:13,0:13:24:0,24,360 0/0:13,0:13:33:0,33,495 0/0:4,0:4:12:0,12,141 0/0:5,0:5:12:0,12,180 0/0:9,0:9:27:0,27,330 0/0:20,0:20:51:0,51,765 0/0:7,0:7:15:0,15,225 0/0:4,0:4:12:0,12,138 0/0:16,0:16:45:0,45,675 0/0:17,0:17:42:0,42,630 0/0:6,0:6:18:0,18,224 0/0:1,0:1:3:0,3,36 0/0:8,0:8:24:0,24,308 0/0:8,0:8:21:0,21,315 1 11854457 rs4846051 G A 239762.72 . AC=194;AF=1.00;AN=194;BaseQRankSum=1.51;ClippingRankSum=0.530;DB;DP=6267;FS=0.000;InbreedingCoeff=-0.0000;MLEAC=194;MLEAF=1.00;MQ=58.99;MQRankSum=1.13;QD=32.93;ReadPosRankSum=0.369;SOR=0.581 GT:AD:DP:GQ:PGT:PID:PL 1/1:0,64:64:99:1|1:11854457_G_A:2641,202,0 1/1:0,89:89:99:1|1:11854457_G_A:3574,270,0 1/1:0,94:94:99:1|1:11854457_G_A:3740,285,0 1/1:0,67:67:99:.:.:2445,201,0 1/1:0,63:63:99:1|1:11854457_G_A:2628,196,0 1/1:0,108:108:99:.:.:3964,324,0 1/1:0,38:38:99:1|1:11854457_G_A:1590,123,0 1/1:0,46:46:99:.:.:1727,138,0 1/1:0,57:57:99:1|1:11854457_G_A:2411,181,0 1/1:0,61:61:99:.:.:2144,183,0 1/1:0,47:47:99:1|1:11854457_G_A:1819,141,0 1/1:0,35:35:99:1|1:11854457_G_A:1492,111,0 ./.:2,0:2 1/1:0,54:54:99:1|1:11854457_G_A:2179,166,0 1/1:0,57:57:99:1|1:11854457_G_A:2191,171,0 1/1:0,45:45:99:1|1:11854457_G_A:2008,144,0 1/1:0,39:39:99:1|1:11854457_G_A:1619,120,0 1/1:0,50:50:99:1|1:11854457_G_A:2114,153,0 1/1:0,69:69:99:.:.:2556,207,0 1/1:0,107:107:99:.:.:3660,322,0 1/1:0,74:74:99:.:.:2803,223,0 1/1:0,83:83:99:.:.:3047,249,0 1/1:0,40:40:99:.:.:1524,120,0 1/1:0,176:176:99:.:.:6588,529,0 1/1:0,39:39:99:.:.:1482,117,0 1/1:0,122:122:99:1|1:11854457_G_A:4598,373,0 1/1:0,52:52:99:1|1:11854457_G_A:2111,160,0 1/1:0,39:39:99:.:.:1462,117,0 1/1:0,40:40:99:.:.:1508,120,0 1/1:0,34:34:99:.:.:1253,102,0 1/1:0,38:38:99:1|1:11854457_G_A:1542,117,0 1/1:0,47:47:99:.:.:1737,141,0 1/1:0,39:39:99:.:.:1463,117,0 1/1:0,45:45:99:1|1:11854457_G_A:1831,135,0 1/1:0,73:73:99:1|1:11854457_G_A:2959,223,0 1/1:0,133:133:99:1|1:11854457_G_A:4965,406,0 1/1:0,49:49:99:1|1:11854457_G_A:1965,147,0 1/1:0,60:60:99:1|1:11854457_G_A:2505,190,0 1/1:0,46:46:99:1|1:11854457_G_A:1775,138,0 1/1:0,53:53:99:1|1:11854457_G_A:2143,160,0 1/1:0,30:30:99:1|1:11854457_G_A:1369,99,0 1/1:0,28:28:84:.:.:1079,84,0 1/1:0,36:36:99:.:.:1285,108,0 1/1:0,34:34:99:1|1:11854457_G_A:1424,105,0 1/1:0,53:53:99:1|1:11854457_G_A:2153,163,0 1/1:0,82:82:99:1|1:11854457_G_A:3309,255,0 1/1:0,61:61:99:.:.:2293,184,0 1/1:3,101:104:99:1|1:11854457_G_A:4036,224,0 1/1:0,49:49:99:.:.:1716,147,0 1/1:0,35:35:99:.:.:1334,105,0 1/1:0,46:46:99:.:.:1722,138,0 1/1:0,39:39:99:1|1:11854457_G_A:1650,123,0 1/1:0,49:49:99:1|1:11854457_G_A:2014,150,0 1/1:0,51:51:99:1|1:11854457_G_A:2129,162,0 1/1:0,48:48:99:.:.:1770,144,0 ./.:1,0:1 1/1:0,86:86:99:1|1:11854457_G_A:3480,267,0 1/1:0,126:126:99:.:.:4608,378,0 1/1:0,35:35:99:.:.:1294,105,0 1/1:0,41:41:99:1|1:11854457_G_A:1825,126,0 1/1:0,62:62:99:1|1:11854457_G_A:2506,193,0 1/1:0,53:53:99:1|1:11854457_G_A:2222,163,0 1/1:0,59:59:99:1|1:11854457_G_A:2705,190,0 1/1:0,52:52:99:.:.:1958,156,0 1/1:0,54:54:99:.:.:1930,162,0 1/1:0,44:44:99:1|1:11854457_G_A:1900,135,0 1/1:0,43:43:99:1|1:11854457_G_A:1741,129,0 1/1:0,36:36:99:1|1:11854457_G_A:1465,108,0 1/1:0,54:54:99:1|1:11854457_G_A:2068,162,0 1/1:0,37:37:99:1|1:11854457_G_A:1493,114,0 1/1:0,61:61:99:1|1:11854457_G_A:2490,186,0 1/1:0,50:50:99:1|1:11854457_G_A:1938,150,0 1/1:0,70:70:99:.:.:2549,210,0 1/1:0,84:84:99:1|1:11854457_G_A:3351,253,0 1/1:0,92:92:99:.:.:3416,276,0 1/1:0,94:94:99:1|1:11854457_G_A:3914,283,0 1/1:0,64:64:99:1|1:11854457_G_A:2578,193,0 1/1:1,220:221:99:.:.:8122,633,0 1/1:0,72:72:99:1|1:11854457_G_A:3075,220,0 1/1:0,53:53:99:.:.:2035,159,0 1/1:0,104:104:99:.:.:3893,313,0 1/1:0,58:58:99:1|1:11854457_G_A:2495,181,0 1/1:0,73:73:99:1|1:11854457_G_A:2917,222,0 1/1:0,65:65:99:.:.:2492,195,0 1/1:0,8:8:24:1|1:11854457_G_A:350,24,0 1/1:0,210:210:99:.:.:7766,630,0 1/1:0,105:105:99:.:.:3938,316,0 1/1:0,68:68:99:.:.:2490,204,0 1/1:0,34:34:99:1|1:11854457_G_A:1380,102,0 1/1:0,34:34:99:1|1:11854457_G_A:1369,105,0 1/1:0,35:35:99:1|1:11854457_G_A:1399,105,0 1/1:1,127:128:99:.:.:4668,374,0 1/1:0,38:38:99:.:.:1455,114,0 ./.:0,0:0 1/1:0,53:53:99:1|1:11854457_G_A:2222,169,0 1/1:1,97:98:99:.:.:3544,262,0 1/1:0,39:39:99:1|1:11854457_G_A:1638,120,0 1/1:0,46:46:99:.:.:1701,138,0 1/1:0,53:53:99:.:.:2033,159,0 1/1:0,72:72:99:.:.:2326,217,0 1 11854476 rs1801131 T G 60467.57 . AC=63;AF=0.315;AN=200;BaseQRankSum=1.83;ClippingRankSum=0.132;DB;DP=5419;FS=2.572;InbreedingCoeff=-0.0481;MLEAC=64;MLEAF=0.320;MQ=58.92;MQRankSum=0.039;QD=18.24;ReadPosRankSum=-1.350e-01;SOR=0.507 GT:AD:DP:GQ:PGT:PID:PL 0/1:32,31:63:99:0|1:11854457_G_A:975,0,953 0/1:52,43:95:99:0|1:11854457_G_A:1336,0,1573 0/1:55,48:103:99:0|1:11854457_G_A:1417,0,1647 0/0:52,0:52:99:.:.:0,99,1485 0/1:41,36:77:99:0|1:11854457_G_A:1158,0,1256 0/0:46,0:46:99:.:.:0,102,1530 0/1:22,30:52:99:0|1:11854457_G_A:935,0,637 0/0:44,0:44:99:.:.:0,102,1530 0/1:30,31:61:99:0|1:11854457_G_A:978,0,902 0/0:44,0:44:99:.:.:0,105,1575 0/1:23,19:42:99:0|1:11854457_G_A:608,0,665 0/1:18,20:38:99:0|1:11854457_G_A:652,0,520 0/0:2,0:2:0:.:.:0,0,1 0/1:43,26:69:99:0|1:11854457_G_A:752,0,1354 0/1:22,28:50:99:0|1:11854457_G_A:849,0,623 1/1:0,58:58:99:1|1:11854457_G_A:2361,180,0 0/1:19,20:39:99:0|1:11854457_G_A:622,0,581 1/1:3,49:52:67:1|1:11854457_G_A:2015,67,0 0/0:44,0:44:99:.:.:0,105,1575 0/0:52,0:52:99:.:.:0,105,1575 0/0:45,0:45:99:.:.:0,102,1530 0/0:50,0:50:99:.:.:0,102,1530 0/0:45,0:45:99:.:.:0,102,1530 0/0:50,0:50:99:.:.:0,105,1575 0/0:39,0:39:99:.:.:0,99,1485 0/1:62,58:120:99:0|1:11854457_G_A:1638,0,1561 0/1:42,21:63:99:0|1:11854457_G_A:586,0,1331 0/0:38,0:38:90:.:.:0,90,1350 0/0:40,0:40:87:.:.:0,87,1305 0/0:37,0:37:99:.:.:0,102,1530 0/1:24,17:41:99:0|1:11854457_G_A:519,0,733 0/0:43,0:43:99:.:.:0,99,1485 0/0:43,0:43:99:.:.:0,99,1485 0/1:19,26:45:99:0|1:11854457_G_A:843,0,495 0/1:51,34:85:99:0|1:11854457_G_A:1055,0,1560 0/0:131,9:140:99:0|1:11854457_G_A:0,107,4323 0/1:31,25:56:99:0|1:11854457_G_A:727,0,955 0/1:35,32:67:99:0|1:11854457_G_A:956,0,1076 0/1:30,17:47:99:0|1:11854457_G_A:492,0,960 0/1:27,25:52:99:0|1:11854457_G_A:791,0,830 1/1:0,37:37:99:1|1:11854457_G_A:1433,111,0 0/0:36,0:36:90:.:.:0,90,1350 0/0:39,0:39:99:.:.:0,99,1485 0/1:18,20:38:99:0|1:11854457_G_A:632,0,550 0/1:31,22:53:99:0|1:11854457_G_A:656,0,965 0/1:50,40:90:99:0|1:11854457_G_A:1079,0,1423 0/0:47,0:47:99:.:.:0,102,1530 0/1:73,60:133:99:0|1:11854457_G_A:1700,0,2137 0/0:51,0:51:99:.:.:0,99,1485 0/0:30,0:30:72:.:.:0,72,1080 0/0:41,0:41:99:.:.:0,99,1485 0/1:25,19:44:99:0|1:11854457_G_A:599,0,784 0/1:27,31:58:99:0|1:11854457_G_A:992,0,784 0/1:37,27:64:99:0|1:11854457_G_A:822,0,1186 0/0:45,0:45:99:.:.:0,108,1620 0/0:2,0:2:0:.:.:0,0,3 0/1:66,45:111:99:0|1:11854457_G_A:1290,0,2018 0/0:44,0:44:99:.:.:0,104,1563 0/0:40,0:40:96:.:.:0,96,1440 1/1:0,53:53:99:1|1:11854457_G_A:2263,163,0 0/1:42,26:68:99:0|1:11854457_G_A:710,0,1333 0/1:31,30:61:99:0|1:11854457_G_A:941,0,970 1/1:0,76:76:99:1|1:11854457_G_A:3102,228,0 0/0:45,0:45:99:.:.:0,99,1485 0/0:52,0:52:99:.:.:0,108,1620 1/1:0,51:51:99:1|1:11854457_G_A:2270,166,0 0/1:29,20:49:99:0|1:11854457_G_A:629,0,883 0/1:19,24:43:99:0|1:11854457_G_A:784,0,567 0/1:31,16:47:99:0|1:11854457_G_A:371,0,954 0/1:16,17:33:99:0|1:11854457_G_A:517,0,470 0/1:41,33:74:99:0|1:11854457_G_A:1017,0,1294 0/1:31,31:62:99:0|1:11854457_G_A:928,0,946 0/0:50,0:50:99:.:.:0,108,1620 0/1:51,34:85:99:0|1:11854457_G_A:948,0,1623 0/0:47,0:47:99:.:.:0,105,1575 1/1:3,82:85:99:1|1:11854457_G_A:3405,155,0 0/1:33,26:59:99:0|1:11854457_G_A:815,0,1042 0/0:46,0:46:99:.:.:0,105,1575 1/1:1,82:83:99:1|1:11854457_G_A:3323,211,0 0/0:49,0:49:99:.:.:0,99,1485 0/0:53,0:53:99:.:.:0,99,1485 1/1:3,59:62:99:1|1:11854457_G_A:2364,104,0 0/1:43,37:80:99:0|1:11854457_G_A:1145,0,1364 0/0:50,0:50:99:.:.:0,105,1575 0/1:7,10:17:99:0|1:11854457_G_A:445,0,208 0/0:42,0:42:99:.:.:0,105,1575 0/0:48,0:48:99:.:.:0,105,1575 0/0:52,0:52:99:.:.:0,105,1575 0/1:16,16:32:99:0|1:11854457_G_A:474,0,479 0/1:21,13:34:99:0|1:11854457_G_A:371,0,668 0/1:28,24:52:99:0|1:11854457_G_A:710,0,845 0/0:44,0:44:99:.:.:0,102,1530 0/0:40,0:40:96:.:.:0,96,1440 0/0:2,0:2:6:.:.:0,6,73 0/1:31,33:64:99:0|1:11854457_G_A:1032,0,902 0/0:49,0:49:99:.:.:0,105,1575 0/1:17,25:42:99:0|1:11854457_G_A:844,0,499 0/0:45,0:45:99:.:.:0,108,1620 0/0:47,0:47:99:.:.:0,99,1485 0/0:49,0:49:99:.:.:0,99,1485 1 11854671 rs12121543 C A 11615.99 . AC=48;AF=0.245;AN=196;BaseQRankSum=-7.880e-01;ClippingRankSum=-7.700e-02;DB;DP=1720;FS=1.985;InbreedingCoeff=0.0272;MLEAC=50;MLEAF=0.255;MQ=58.45;MQRankSum=0.173;QD=16.91;ReadPosRankSum=0.173;SOR=0.480 GT:AD:DP:GQ:PL 0/1:8,7:15:99:205,0,264 0/0:27,0:27:81:0,81,975 0/1:13,12:25:99:356,0,392 0/0:11,0:11:27:0,27,405 0/1:12,8:20:99:233,0,332 0/0:24,0:24:37:0,37,784 0/1:9,6:15:99:175,0,293 0/0:14,0:14:39:0,39,585 0/1:12,12:24:99:370,0,334 0/0:10,0:10:0:0,0,201 0/1:8,5:13:99:122,0,266 0/0:9,0:9:27:0,27,328 ./.:0,0:0 0/0:20,0:20:42:0,42,630 0/1:9,4:13:99:103,0,263 1/1:0,15:15:45:530,45,0 0/0:12,0:12:27:0,27,405 0/1:2,14:16:25:418,0,25 0/0:18,0:18:42:0,42,630 0/0:22,0:22:57:0,57,855 0/0:21,0:21:54:0,54,810 0/0:29,0:29:50:0,50,983 0/0:16,0:16:36:0,36,540 0/0:36,0:36:72:0,72,1080 0/0:8,0:8:15:0,15,225 0/1:13,10:23:99:251,0,390 0/1:10,5:15:99:132,0,339 0/0:9,0:9:27:0,27,338 0/0:9,0:9:21:0,21,315 0/0:8,0:8:21:0,21,315 0/0:9,0:9:0:0,0,54 0/0:13,0:13:27:0,27,405 0/0:13,0:13:39:0,39,461 0/0:15,0:15:39:0,39,585 0/1:11,6:17:99:162,0,361 0/0:35,0:35:70:0,70,1168 0/1:12,6:18:99:161,0,323 0/1:9,12:21:99:373,0,275 0/1:8,5:13:99:148,0,269 0/1:6,9:15:99:273,0,154 1/1:0,11:11:33:370,33,0 0/0:17,0:17:36:0,36,540 0/0:12,0:12:21:0,21,315 0/0:2,0:2:6:0,6,73 0/0:13,0:13:30:0,30,450 0/1:10,9:19:99:270,0,284 0/0:15,0:15:33:0,33,495 0/0:33,0:33:72:0,72,1080 0/0:16,0:16:33:0,33,495 0/0:13,0:13:21:0,21,315 0/0:12,0:12:27:0,27,405 0/1:4,5:9:99:159,0,121 0/1:5,6:11:99:191,0,151 0/1:9,6:15:99:137,0,286 0/0:8,0:8:24:0,24,310 0/0:2,0:2:6:0,6,64 0/1:15,9:24:99:269,0,456 0/0:33,0:33:30:0,30,1013 0/0:9,0:9:26:0,26,275 1/1:0,16:16:48:581,48,0 0/1:14,11:25:99:302,0,417 0/1:8,6:14:99:175,0,245 1/1:0,24:24:72:851,72,0 0/0:5,0:5:12:0,12,180 0/0:15,0:15:45:0,45,543 1/1:0,12:12:36:429,36,0 0/1:6,6:12:99:182,0,165 0/1:6,7:13:99:219,0,156 0/1:8,11:19:99:332,0,232 0/1:7,5:12:99:147,0,195 0/1:11,11:22:99:337,0,337 0/1:7,6:13:99:174,0,233 0/0:17,0:17:48:0,48,720 0/0:27,0:27:40:0,40,905 0/0:20,0:20:36:0,36,540 0/1:7,11:18:99:338,0,199 0/1:6,10:16:99:317,0,147 0/0:46,0:46:99:0,105,1575 1/1:1,21:22:34:721,34,0 0/0:16,0:16:39:0,39,585 0/0:31,0:31:54:0,54,810 1/1:1,19:20:25:557,25,0 0/0:20,0:20:42:0,42,630 0/0:20,0:20:45:0,45,675 0/1:1,6:7:15:195,0,15 0/0:42,0:42:99:0,105,1575 0/0:29,0:29:51:0,51,996 0/0:23,0:23:51:0,51,765 0/0:15,0:15:39:0,39,585 0/0:6,0:6:0:0,0,15 0/1:8,11:19:99:284,0,254 0/0:39,0:39:93:0,93,1395 0/0:10,0:10:24:0,24,360 ./.:0,0:0 0/1:12,9:21:99:262,0,343 0/0:31,0:31:70:0,70,1080 0/1:9,6:15:99:176,0,301 0/0:7,0:7:0:0,0,194 0/0:25,0:25:60:0,60,900 0/0:8,0:8:21:0,21,315 1 11854707 . C T 147.20 . AC=1;AF=5.102e-03;AN=196;BaseQRankSum=-1.016e+00;ClippingRankSum=0.635;DP=1049;FS=2.044;InbreedingCoeff=-0.0236;MLEAC=1;MLEAF=5.102e-03;MQ=57.05;MQRankSum=0.191;QD=6.13;ReadPosRankSum=-4.450e-01;SOR=1.643 GT:AD:DP:GQ:PL 0/0:6,0:6:12:0,12,180 0/0:9,0:9:18:0,18,270 0/0:24,0:24:60:0,60,900 0/0:7,0:7:18:0,18,270 0/0:8,0:8:12:0,12,180 0/0:16,0:16:36:0,36,540 0/0:9,0:9:21:0,21,315 0/0:14,0:14:30:0,30,450 0/0:5,0:5:15:0,15,173 0/0:5,0:5:6:0,6,90 0/0:9,0:9:24:0,24,360 0/0:8,0:8:24:0,24,312 0/0:2,0:2:6:0,6,64 0/0:7,0:7:21:0,21,257 0/0:1,0:1:3:0,3,30 0/0:13,0:13:30:0,30,450 0/0:8,0:8:21:0,21,315 0/0:15,0:15:36:0,36,540 0/0:10,0:10:18:0,18,270 0/0:10,0:10:24:0,24,360 0/0:13,0:13:36:0,36,540 0/0:16,0:16:39:0,39,585 0/0:10,0:10:21:0,21,315 0/0:30,0:30:69:0,69,1035 0/0:6,0:6:15:0,15,225 0/0:22,0:22:42:0,42,630 0/0:10,0:10:24:0,24,360 0/0:3,0:3:3:0,3,45 0/0:10,0:10:24:0,24,360 0/0:6,0:6:18:0,18,219 0/0:7,0:7:21:0,21,251 0/0:5,0:5:15:0,15,184 0/0:12,0:12:24:0,24,360 0/0:8,0:8:18:0,18,270 0/0:13,0:13:36:0,36,540 0/0:15,0:15:42:0,42,630 0/0:15,0:15:33:0,33,495 0/0:16,0:16:36:0,36,540 0/0:9,0:9:24:0,24,360 0/0:3,0:3:9:0,9,111 0/0:6,0:6:18:0,18,199 0/0:6,0:6:15:0,15,225 0/0:7,0:7:15:0,15,225 0/0:3,0:3:9:0,9,110 0/0:9,0:9:24:0,24,360 0/0:16,0:16:45:0,45,675 0/0:8,0:8:21:0,21,315 0/1:17,7:24:99:189,0,569 0/0:7,0:7:21:0,21,261 0/0:2,0:2:6:0,6,67 0/0:4,0:4:12:0,12,145 0/0:7,0:7:21:0,21,257 0/0:4,0:4:12:0,12,142 0/0:9,0:9:24:0,24,360 0/0:3,0:3:9:0,9,91 ./.:0,0:0 0/0:24,0:24:66:0,66,990 0/0:13,0:13:30:0,30,450 0/0:3,0:3:9:0,9,111 0/0:12,0:12:36:0,36,460 0/0:15,0:15:30:0,30,450 0/0:4,0:4:12:0,12,133 0/0:15,0:15:42:0,42,630 0/0:7,0:7:21:0,21,248 0/0:6,0:6:18:0,18,217 0/0:7,0:7:18:0,18,270 0/0:7,0:7:21:0,21,248 0/0:5,0:5:12:0,12,180 0/0:6,0:6:9:0,9,135 0/0:11,0:11:30:0,30,450 0/0:14,0:14:30:0,30,450 0/0:14,0:14:36:0,36,540 0/0:8,0:8:24:0,24,293 0/0:11,0:11:27:0,27,405 0/0:12,0:12:33:0,33,495 0/0:15,0:15:27:0,27,405 0/0:8,0:8:18:0,18,270 0/0:47,0:47:90:0,90,1350 0/0:19,0:19:42:0,42,630 0/0:11,0:11:27:0,27,405 0/0:22,0:22:54:0,54,810 0/0:13,0:13:24:0,24,360 0/0:13,0:13:33:0,33,495 0/0:11,0:11:27:0,27,405 0/0:3,0:3:9:0,9,115 0/0:43,0:43:96:0,96,1440 0/0:21,0:21:45:0,45,675 0/0:11,0:11:12:0,12,180 0/0:3,0:3:9:0,9,103 0/0:3,0:3:6:0,6,90 0/0:13,0:13:33:0,33,495 0/0:19,0:19:42:0,42,630 0/0:5,0:5:12:0,12,180 ./.:0,0:0 0/0:5,0:5:12:0,12,180 0/0:14,0:14:36:0,36,540 0/0:6,0:6:6:0,6,90 0/0:6,0:6:15:0,15,225 0/0:8,0:8:21:0,21,315 0/0:6,0:6:9:0,9,135 1 11854755 rs1994798 G A 10479.22 . AC=68;AF=0.436;AN=156;BaseQRankSum=-9.220e-01;ClippingRankSum=0.00;DB;DP=653;FS=0.000;InbreedingCoeff=0.2573;MLEAC=86;MLEAF=0.551;MQ=58.97;MQRankSum=0.529;QD=26.20;ReadPosRankSum=0.00;SOR=0.678 GT:AD:DP:GQ:PL 0/1:4,4:8:99:120,0,123 0/1:5,7:12:99:216,0,156 1/1:0,5:5:15:178,15,0 1/1:0,8:8:24:289,24,0 0/1:5,4:9:99:124,0,169 1/1:0,6:6:18:225,18,0 0/0:6,0:6:0:0,0,10 1/1:0,9:9:27:343,27,0 ./.:4,0:4 ./.:0,0:0 0/1:1,6:7:20:209,0,20 ./.:3,0:3 ./.:2,0:2 ./.:4,0:4 ./.:2,0:2 0/0:6,0:6:18:0,18,220 0/0:4,0:4:9:0,9,135 0/0:8,0:8:21:0,21,315 1/1:0,5:5:15:175,15,0 1/1:0,7:7:21:243,21,0 1/1:0,11:11:33:408,33,0 0/1:5,7:12:99:220,0,143 1/1:0,5:5:15:185,15,0 1/1:0,10:10:30:337,30,0 1/1:0,6:6:18:219,18,0 0/0:9,0:9:0:0,0,53 0/0:5,0:5:0:0,0,110 ./.:2,0:2 ./.:2,0:2 1/1:0,6:6:18:221,18,0 0/0:4,0:4:0:0,0,5 ./.:3,0:3 1/1:0,8:8:24:259,24,0 ./.:3,0:3 0/1:5,8:13:99:269,0,155 0/1:10,4:14:99:100,0,341 0/0:7,0:7:0:0,0,40 0/0:9,0:9:0:0,0,46 0/0:1,0:1:3:0,3,28 ./.:4,0:4 0/0:6,0:6:15:0,15,225 ./.:2,0:2 1/1:0,4:4:12:144,12,0 0/0:3,0:3:0:0,0,40 0/0:1,0:1:3:0,3,37 0/0:7,0:7:0:0,0,42 1/1:0,10:10:30:373,30,0 0/1:4,5:9:99:152,0,134 0/0:4,0:4:0:0,0,1 0/0:3,0:3:0:0,0,41 0/0:4,0:4:12:0,12,137 ./.:6,0:6 0/0:4,0:4:0:0,0,7 0/1:6,6:12:99:192,0,167 ./.:3,0:3 0/0:2,0:2:6:0,6,60 0/1:9,17:26:99:558,0,245 1/1:0,7:7:21:259,21,0 ./.:0,0:0 0/0:4,0:4:12:0,12,152 ./.:7,0:7 0/1:4,5:9:99:143,0,127 0/0:4,0:4:9:0,9,135 1/1:0,5:5:15:193,15,0 1/1:0,6:6:18:231,18,0 0/0:2,0:2:6:0,6,76 0/0:5,0:5:9:0,9,135 0/0:6,0:6:0:0,0,13 0/0:4,0:4:9:0,9,135 0/0:8,0:8:0:0,0,196 0/0:6,0:6:0:0,0,87 0/0:5,0:5:0:0,0,43 0/0:7,0:7:0:0,0,180 0/0:9,0:9:0:0,0,44 1/1:0,6:6:18:188,18,0 0/0:11,0:11:0:0,0,310 0/1:4,5:9:99:165,0,133 1/1:0,17:17:51:589,51,0 0/0:8,0:8:12:0,12,180 1/1:0,4:4:12:154,12,0 0/1:2,7:9:50:217,0,50 0/0:7,0:7:0:0,0,174 0/1:4,4:8:99:129,0,135 ./.:2,0:2 ./.:0,0:0 1/1:0,26:26:78:908,78,0 0/1:11,8:19:99:221,0,371 1/1:0,5:5:15:177,15,0 ./.:2,0:2 0/0:2,0:2:0:0,0,18 ./.:2,0:2 1/1:0,11:11:33:386,33,0 1/1:0,5:5:15:195,15,0 ./.:1,0:1 0/0:7,0:7:0:0,0,45 0/1:7,14:21:99:454,0,195 0/0:5,0:5:0:0,0,111 1/1:0,4:4:12:143,12,0 1/1:0,7:7:21:269,21,0 ./.:1,0:1 1 11854896 rs2066462 G A 685.30 . AC=6;AF=0.035;AN=172;BaseQRankSum=0.741;ClippingRankSum=0.322;DB;DP=577;FS=1.190;InbreedingCoeff=0.0331;MLEAC=7;MLEAF=0.041;MQ=57.66;MQRankSum=0.633;QD=14.90;ReadPosRankSum=0.365;SOR=0.976 GT:AD:DP:GQ:PL 0/0:4,0:4:9:0,9,135 0/0:10,0:10:27:0,27,405 0/0:5,0:5:15:0,15,178 0/0:5,0:5:15:0,15,170 ./.:3,0:3 0/0:10,0:10:30:0,30,352 0/0:5,0:5:0:0,0,131 0/0:8,0:8:24:0,24,263 ./.:4,0:4 0/0:2,0:2:6:0,6,71 0/0:4,0:4:12:0,12,157 ./.:1,0:1 ./.:0,0:0 0/0:3,0:3:9:0,9,96 ./.:6,0:6 1/1:0,7:7:21:251,21,0 0/0:3,0:3:9:0,9,111 0/0:9,0:9:0:0,0,147 0/0:3,0:3:9:0,9,88 0/0:7,0:7:15:0,15,225 0/0:3,0:3:9:0,9,115 0/0:14,0:14:7:0,7,425 0/0:3,0:3:9:0,9,115 0/0:20,0:20:45:0,45,675 0/0:4,0:4:12:0,12,155 0/0:18,0:18:48:0,48,720 0/0:1,0:1:3:0,3,30 0/0:1,0:1:3:0,3,39 0/0:4,0:4:12:0,12,145 0/0:3,0:3:6:0,6,90 0/0:5,0:5:15:0,15,187 ./.:0,0:0 0/0:5,0:5:1:0,1,129 0/0:3,0:3:9:0,9,101 0/1:5,3:8:80:80,0,145 0/0:11,0:11:30:0,30,450 ./.:2,0:2 0/0:5,0:5:0:0,0,62 0/0:3,0:3:9:0,9,113 0/0:6,0:6:15:0,15,225 0/0:4,0:4:12:0,12,129 ./.:0,0:0 ./.:0,0:0 ./.:3,0:3 0/0:2,0:2:6:0,6,76 0/1:7,4:11:99:115,0,189 0/0:11,0:11:24:0,24,360 0/0:15,0:15:39:0,39,585 0/0:5,0:5:15:0,15,173 ./.:0,0:0 0/0:5,0:5:15:0,15,151 0/0:8,0:8:0:0,0,68 ./.:3,0:3 0/0:6,0:6:18:0,18,182 0/0:6,0:6:9:0,9,135 ./.:0,0:0 0/0:14,0:14:0:0,0,247 0/0:8,0:8:0:0,0,231 0/0:3,0:3:9:0,9,112 0/0:10,0:10:21:0,21,315 0/1:3,7:10:81:231,0,81 0/0:4,0:4:9:0,9,135 0/0:5,0:5:15:0,15,173 0/0:4,0:4:9:0,9,135 0/0:5,0:5:9:0,9,135 0/0:3,0:3:6:0,6,90 0/0:3,0:3:9:0,9,109 0/0:8,0:8:21:0,21,315 0/0:5,0:5:12:0,12,180 0/0:5,0:5:0:0,0,93 0/0:6,0:6:0:0,0,25 ./.:3,0:3 0/0:8,0:8:24:0,24,285 0/0:8,0:8:24:0,24,305 0/0:10,0:10:27:0,27,405 0/1:6,4:10:99:115,0,165 0/0:2,0:2:6:0,6,70 0/0:25,0:25:60:0,60,900 0/0:8,0:8:15:0,15,225 0/0:2,0:2:6:0,6,51 0/0:7,0:7:21:0,21,252 0/0:7,0:7:21:0,21,242 0/0:8,0:8:24:0,24,300 0/0:4,0:4:12:0,12,135 0/0:1,0:1:3:0,3,37 0/0:19,0:19:57:0,57,680 0/0:10,0:10:30:0,30,363 0/0:5,0:5:12:0,12,180 0/0:1,0:1:3:0,3,33 0/0:5,0:5:0:0,0,22 0/0:2,0:2:0:0,0,3 0/0:7,0:7:18:0,18,270 0/0:8,0:8:21:0,21,315 0/0:1,0:1:3:0,3,34 0/0:2,0:2:6:0,6,65 0/0:6,0:6:18:0,18,193 0/0:5,0:5:9:0,9,135 0/0:5,0:5:12:0,12,180 0/0:5,0:5:12:0,12,180 0/0:1,0:1:3:0,3,31 1 11855283 rs147979890 C T 174.81 . AC=1;AF=5.000e-03;AN=200;BaseQRankSum=0.484;ClippingRankSum=-1.610e-01;DB;DP=2728;FS=8.828;InbreedingCoeff=-0.0080;MLEAC=1;MLEAF=5.000e-03;MQ=55.86;MQRankSum=-1.581e+00;QD=7.60;ReadPosRankSum=-8.710e-01;SOR=0.045 GT:AD:DP:GQ:PL 0/0:22,0:22:48:0,48,720 0/0:39,0:39:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:32,0:32:81:0,81,1215 0/0:37,0:37:99:0,99,1485 0/0:41,0:41:99:0,99,1369 0/0:29,0:29:81:0,81,1215 0/0:26,0:26:57:0,57,855 0/0:31,0:31:78:0,78,1170 0/0:40,0:40:99:0,102,1470 0/0:29,0:29:72:0,72,1080 0/0:14,0:14:31:0,31,490 0/0:3,0:3:6:0,6,90 0/0:27,0:27:66:0,66,990 0/1:15,8:23:99:217,0,440 0/0:23,0:23:60:0,60,900 0/0:28,0:28:66:0,66,990 0/0:29,0:29:60:0,60,900 0/0:29,0:29:65:0,65,990 0/0:41,0:41:99:0,99,1485 0/0:27,0:27:81:0,81,1020 0/0:34,0:34:81:0,81,1215 0/0:25,0:25:57:0,57,855 0/0:41,0:41:99:0,99,1481 0/0:25,0:25:60:0,60,900 0/0:46,0:46:99:0,100,1328 0/0:31,0:31:84:0,84,1260 0/0:35,0:35:69:0,69,1035 0/0:23,0:23:54:0,54,810 0/0:24,0:24:51:0,51,765 0/0:17,0:17:48:0,48,720 0/0:18,0:18:27:0,27,405 0/0:19,0:19:42:0,42,630 0/0:18,0:18:48:0,48,720 0/0:27,0:27:63:0,63,945 0/0:42,0:42:99:0,99,1485 0/0:20,0:20:42:0,42,630 0/0:24,0:24:72:0,72,938 0/0:12,0:12:33:0,33,495 0/0:27,0:27:72:0,72,1080 0/0:21,0:21:48:0,48,720 0/0:8,0:8:24:0,24,296 0/0:20,0:20:60:0,60,722 0/0:18,0:18:39:0,39,585 0/0:22,0:22:60:0,60,900 0/0:33,0:33:87:0,87,1305 0/0:35,0:35:81:0,81,1215 0/0:40,0:40:99:0,99,1426 0/0:19,0:19:51:0,51,765 0/0:12,0:12:30:0,30,450 0/0:22,0:22:45:0,45,675 0/0:19,0:19:45:0,45,675 0/0:22,0:22:54:0,54,810 0/0:21,0:21:51:0,51,765 0/0:34,0:34:69:0,69,1035 0/0:1,0:1:3:0,3,29 0/0:41,0:41:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:19,0:19:36:0,36,540 0/0:22,0:22:57:0,57,855 0/0:40,0:40:99:0,99,1485 0/0:22,0:22:60:0,60,900 0/0:33,0:33:78:0,78,1170 0/0:20,0:20:54:0,54,810 0/0:17,0:17:51:0,51,579 0/0:29,0:29:63:0,63,945 0/0:16,0:16:45:0,45,675 0/0:26,0:26:57:0,57,855 0/0:16,0:16:30:0,30,450 0/0:21,0:21:45:0,45,675 0/0:36,0:36:96:0,96,1440 0/0:18,0:18:48:0,48,720 0/0:35,0:35:99:0,99,1485 0/0:36,0:36:99:0,99,1485 0/0:44,0:44:99:0,100,1502 0/0:41,0:41:99:0,99,1463 0/0:17,0:17:45:0,45,675 0/0:45,0:45:99:0,99,1485 0/0:40,0:40:99:0,102,1530 0/0:29,0:29:75:0,75,1125 0/0:36,0:36:87:0,87,1305 0/0:27,0:27:57:0,57,855 0/0:32,0:32:69:0,69,1035 0/0:24,0:24:54:0,54,810 0/0:6,0:6:15:0,15,225 0/0:44,0:44:99:0,102,1530 0/0:41,0:41:90:0,90,1350 0/0:41,0:41:93:0,93,1395 0/0:17,0:17:39:0,39,585 0/0:13,0:13:27:0,27,405 0/0:23,0:23:63:0,63,945 0/0:46,0:46:99:0,99,1485 0/0:16,0:16:39:0,39,585 0/0:5,0:5:6:0,6,90 0/0:24,0:24:51:0,51,765 0/0:40,0:40:90:0,90,1350 0/0:23,0:23:42:0,42,630 0/0:24,0:24:57:0,57,855 0/0:34,0:34:87:0,87,1305 0/0:35,0:35:72:0,72,1080 1 11856084 rs45439601 G A 253.33 . AC=2;AF=0.014;AN=144;BaseQRankSum=0.742;ClippingRankSum=0.742;DB;DP=210;FS=0.000;InbreedingCoeff=-0.1215;MLEAC=2;MLEAF=0.014;MQ=60.00;MQRankSum=0.731;QD=21.11;ReadPosRankSum=0.742;SOR=2.670 GT:AD:DP:GQ:PL ./.:0,0:0 0/0:2,0:2:6:0,6,74 0/0:4,0:4:12:0,12,120 0/0:1,0:1:3:0,3,34 0/0:3,0:3:0:0,0,34 0/0:5,0:5:15:0,15,160 0/0:2,0:2:3:0,3,45 0/0:2,0:2:6:0,6,69 0/0:4,0:4:0:0,0,75 ./.:0,0:0 ./.:0,0:0 0/0:3,0:3:9:0,9,103 ./.:0,0:0 0/0:1,0:1:3:0,3,34 0/0:1,0:1:3:0,3,27 ./.:3,0:3 0/0:1,0:1:3:0,3,34 0/0:2,0:2:6:0,6,63 0/0:2,0:2:6:0,6,67 0/0:5,0:5:12:0,12,180 0/0:4,0:4:12:0,12,131 0/0:1,0:1:3:0,3,27 0/0:3,0:3:9:0,9,105 ./.:0,0:0 0/0:3,0:3:9:0,9,91 0/0:1,0:1:3:0,3,31 0/0:4,0:4:12:0,12,108 ./.:0,0:0 0/0:3,0:3:9:0,9,94 0/0:2,0:2:6:0,6,51 ./.:0,0:0 0/0:1,0:1:3:0,3,31 0/0:3,0:3:6:0,6,90 0/0:1,0:1:3:0,3,31 ./.:4,0:4 0/0:1,0:1:3:0,3,33 0/0:1,0:1:3:0,3,33 0/0:2,0:2:6:0,6,55 0/0:1,0:1:3:0,3,30 ./.:0,0:0 0/0:3,0:3:9:0,9,104 0/0:2,0:2:6:0,6,60 0/0:1,0:1:3:0,3,27 ./.:2,0:2 ./.:0,0:0 0/0:5,0:5:15:0,15,163 0/0:1,0:1:3:0,3,34 ./.:0,0:0 0/0:6,0:6:15:0,15,225 0/0:1,0:1:3:0,3,34 0/0:2,0:2:6:0,6,32 0/0:2,0:2:0:0,0,17 0/0:3,0:3:3:0,3,45 0/0:3,0:3:6:0,6,90 ./.:0,0:0 ./.:0,0:0 0/0:8,0:8:0:0,0,207 0/0:2,0:2:6:0,6,59 0/0:2,0:2:6:0,6,58 ./.:0,0:0 0/1:1,4:5:14:126,0,14 0/0:2,0:2:6:0,6,53 ./.:0,0:0 ./.:0,0:0 ./.:0,0:0 0/0:2,0:2:6:0,6,57 0/0:4,0:4:12:0,12,139 ./.:0,0:0 0/0:1,0:1:3:0,3,33 0/0:1,0:1:3:0,3,36 0/1:1,6:7:14:179,0,14 0/0:2,0:2:6:0,6,63 0/0:3,0:3:6:0,6,90 0/0:4,0:4:12:0,12,131 0/0:5,0:5:12:0,12,180 0/0:1,0:1:3:0,3,29 0/0:2,0:2:6:0,6,72 0/0:6,0:6:18:0,18,177 0/0:1,0:1:3:0,3,27 ./.:1,0:1 0/0:5,0:5:12:0,12,180 0/0:4,0:4:12:0,12,120 0/0:3,0:3:9:0,9,83 0/0:4,0:4:12:0,12,112 ./.:0,0:0 0/0:8,0:8:24:0,24,250 0/0:5,0:5:15:0,15,186 0/0:1,0:1:3:0,3,33 0/0:2,0:2:6:0,6,53 ./.:0,0:0 ./.:1,0:1 0/0:2,0:2:6:0,6,63 0/0:2,0:2:6:0,6,66 ./.:0,0:0 0/0:3,0:3:9:0,9,105 0/0:3,0:3:9:0,9,108 ./.:0,0:0 ./.:0,0:0 0/0:1,0:1:3:0,3,27 ./.:0,0:0 1 11856335 rs34279942 G A 2249.85 . AC=1;AF=5.051e-03;AN=198;BaseQRankSum=-2.394e+00;ClippingRankSum=-1.266e+00;DB;DP=3618;FS=8.745;InbreedingCoeff=0.0654;MLEAC=1;MLEAF=5.051e-03;MQ=59.24;MQRankSum=0.322;QD=16.19;ReadPosRankSum=0.434;SOR=1.474 GT:AD:DP:GQ:PL 0/0:38,0:38:93:0,93,1395 0/0:39,0:39:99:0,102,1530 0/0:39,0:39:99:0,99,1485 0/0:39,0:39:99:0,101,1530 0/0:37,0:37:99:0,99,1485 0/0:43,0:43:99:0,102,1530 0/0:39,0:39:93:0,93,1395 0/0:41,0:41:96:0,96,1440 0/0:38,0:38:99:0,102,1530 0/0:38,0:38:99:0,103,1288 0/0:36,0:36:90:0,90,1350 0/0:32,0:32:72:0,72,1080 0/0:5,0:5:15:0,15,177 0/0:40,0:40:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:36,0:36:84:0,84,1260 0/0:39,0:39:99:0,99,1485 0/0:36,0:36:99:0,99,1485 0/0:39,0:39:99:0,102,1298 0/0:36,0:36:99:0,99,1485 0/0:43,0:43:99:0,102,1530 0/0:42,0:42:99:0,99,1485 0/0:23,0:23:60:0,60,861 0/0:37,0:37:99:0,99,1454 0/0:24,0:24:60:0,60,900 0/1:58,81:139:99:2292,0,1582 0/0:27,0:27:63:0,63,945 0/0:36,0:36:84:0,84,1260 0/0:33,0:33:81:0,81,1215 0/0:41,0:41:99:0,99,1485 0/0:28,0:28:72:0,72,1080 0/0:38,0:38:84:0,84,1260 0/0:29,0:29:54:0,54,810 0/0:26,0:26:58:0,58,907 0/0:40,0:40:99:0,99,1485 0/0:48,0:48:99:0,102,1530 0/0:38,0:38:72:0,72,1080 0/0:42,0:42:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:41,0:41:99:0,102,1530 0/0:15,0:15:45:0,45,545 0/0:32,0:32:84:0,84,1260 0/0:36,0:36:90:0,90,1350 0/0:29,0:29:72:0,72,1080 0/0:28,0:28:81:0,81,1215 0/0:42,0:42:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:44,0:44:99:0,100,1530 0/0:24,0:24:57:0,57,855 0/0:29,0:29:51:0,51,765 0/0:23,0:23:60:0,60,900 0/0:40,0:40:99:0,99,1485 0/0:35,0:35:93:0,93,1395 0/0:45,0:45:99:0,102,1530 ./.:0,0:0 0/0:37,0:37:99:0,99,1461 0/0:44,0:44:99:0,99,1485 0/0:19,0:19:42:0,42,630 0/0:39,0:39:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:37,0:37:99:0,99,1389 0/0:36,0:36:90:0,90,1350 0/0:37,0:37:99:0,99,1485 0/0:39,0:39:78:0,78,1170 0/0:29,0:29:81:0,81,1215 0/0:37,0:37:99:0,99,1403 0/0:39,0:39:99:0,99,1437 0/0:38,0:38:99:0,99,1485 0/0:27,0:27:60:0,60,900 0/0:38,0:38:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:38,0:38:99:0,105,1575 0/0:43,0:43:99:0,99,1485 0/0:40,0:40:99:0,102,1530 0/0:37,0:37:99:0,99,1364 0/0:31,0:31:69:0,69,1100 0/0:54,0:54:99:0,105,1754 0/0:38,0:38:99:0,99,1485 0/0:30,0:30:81:0,81,1215 0/0:42,0:42:99:0,111,1665 0/0:39,0:39:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:38,0:38:99:0,99,1373 0/0:12,0:12:30:0,30,450 0/0:37,0:37:99:0,99,1485 0/0:38,0:38:99:0,100,1530 0/0:40,0:40:99:0,102,1530 0/0:24,0:24:60:0,60,900 0/0:21,0:21:39:0,39,746 0/0:39,0:39:96:0,96,1440 0/0:42,0:42:99:0,99,1485 0/0:29,0:29:71:0,71,1014 0/0:2,0:2:0:0,0,9 0/0:38,0:38:99:0,99,1485 0/0:40,0:40:99:0,102,1530 0/0:33,0:33:81:0,81,1215 0/0:45,0:45:85:0,85,1305 0/0:39,0:39:99:0,99,1485 0/0:36,0:36:84:0,84,1260 1 11856378 rs1801133 G A 36979.84 . AC=66;AF=0.337;AN=196;BaseQRankSum=-2.136e+00;ClippingRankSum=0.00;DB;DP=3485;FS=3.311;InbreedingCoeff=-0.1526;MLEAC=67;MLEAF=0.342;MQ=58.97;MQRankSum=0.140;QD=17.01;ReadPosRankSum=-1.710e-01;SOR=0.481 GT:AD:DP:GQ:PL 0/0:29,0:29:60:0,60,900 0/1:24,38:62:99:1094,0,701 0/0:48,0:48:72:0,72,1571 0/1:23,16:39:99:433,0,722 0/0:37,0:37:99:0,99,1485 1/1:1,50:51:99:1698,113,0 0/1:11,15:26:99:466,0,263 0/1:13,11:24:99:326,0,430 0/1:14,16:30:99:463,0,436 0/0:38,0:38:99:0,103,1288 0/1:10,13:23:99:355,0,316 0/0:21,0:21:45:0,45,675 0/0:2,0:2:6:0,6,74 0/1:17,18:35:99:533,0,511 0/1:17,10:27:99:243,0,514 0/0:32,0:32:72:0,72,1080 0/0:38,0:38:81:0,81,1215 0/0:36,0:36:40:0,40,1114 0/1:21,17:38:99:497,0,505 0/0:50,0:50:99:0,102,1530 1/1:0,40:40:99:1382,120,0 0/1:29,20:49:99:515,0,773 0/1:11,12:23:99:331,0,337 0/1:46,51:97:99:1546,0,1355 1/1:0,20:20:60:629,60,0 0/0:46,0:46:99:0,99,1485 0/1:9,13:22:99:400,0,282 0/1:20,12:32:99:352,0,657 0/0:23,0:23:48:0,48,720 0/0:27,0:27:36:0,36,540 0/1:14,10:24:99:277,0,453 0/1:17,25:42:99:755,0,499 1/1:0,32:32:96:1166,96,0 0/0:22,0:22:51:0,51,765 0/1:20,26:46:99:777,0,602 0/1:27,24:51:99:683,0,775 0/1:11,12:23:99:362,0,350 0/0:29,0:29:75:0,75,1125 0/1:15,19:34:99:585,0,336 0/1:15,15:30:99:450,0,412 0/0:21,0:21:54:0,54,810 0/0:15,0:15:27:0,27,405 1/1:0,25:25:75:861,75,0 0/1:15,6:21:99:145,0,499 0/1:5,12:17:99:380,0,139 0/1:29,16:45:99:407,0,852 0/1:22,25:47:99:748,0,690 0/0:41,0:41:99:0,99,1485 0/1:28,16:44:99:436,0,886 0/1:8,9:17:99:270,0,248 0/1:15,14:29:99:392,0,358 0/1:12,8:20:99:206,0,411 0/0:30,0:30:57:0,57,855 0/1:16,13:29:99:386,0,512 0/1:38,33:71:99:946,0,1262 ./.:1,0:1 0/0:37,0:37:99:0,99,1461 0/0:44,0:44:99:0,99,1485 1/1:0,26:26:77:823,77,0 0/0:31,0:31:57:0,57,855 0/1:32,13:45:99:316,0,1060 0/1:17,16:33:99:481,0,559 0/0:24,0:24:60:0,60,900 0/1:14,9:23:99:197,0,444 0/1:12,13:25:99:370,0,354 0/0:34,0:34:75:0,75,1125 0/0:25,0:25:54:0,54,810 0/1:12,17:29:99:498,0,326 0/0:26,0:26:51:0,51,765 0/0:18,0:18:0:0,0,115 0/1:27,17:44:99:434,0,829 0/1:14,17:31:99:488,0,410 0/1:22,29:51:99:871,0,636 0/0:43,0:43:99:0,99,1485 0/1:8,65:73:96:2066,0,96 0/0:37,0:37:99:0,99,1364 0/1:18,14:32:99:399,0,565 1/1:1,101:102:99:3461,295,0 0/0:41,0:41:99:0,99,1485 1/1:0,24:24:72:880,72,0 0/1:28,34:62:99:987,0,840 0/0:38,0:38:51:0,51,765 0/0:42,0:42:90:0,90,1350 0/1:13,18:31:99:541,0,401 0/0:12,0:12:30:0,30,450 0/0:37,0:37:99:0,99,1485 0/0:38,0:38:99:0,100,1530 0/0:47,0:47:75:0,75,1586 0/0:16,0:16:27:0,27,405 0/0:17,0:17:17:0,17,546 0/1:24,13:37:99:304,0,807 0/1:42,25:67:99:583,0,1345 0/1:13,11:24:99:327,0,380 ./.:1,0:1 0/0:38,0:38:90:0,90,1350 0/0:45,0:45:90:0,90,1350 0/1:8,13:21:99:372,0,241 0/1:16,18:34:99:538,0,466 0/1:15,12:27:99:320,0,513 0/1:21,27:48:99:628,0,528 1 11860117 rs13306553 A G 2103.65 . AC=15;AF=0.079;AN=190;BaseQRankSum=0.736;ClippingRankSum=-1.840e-01;DB;DP=850;FS=0.000;InbreedingCoeff=0.0911;MLEAC=16;MLEAF=0.084;MQ=56.04;MQRankSum=0.00;QD=17.68;ReadPosRankSum=-2.120e-01;SOR=0.251 GT:AD:DP:GQ:PGT:PID:PL 0/0:10,0:10:30:.:.:0,30,316 0/0:15,0:15:42:.:.:0,42,630 0/0:6,0:6:18:.:.:0,18,222 0/0:6,0:6:18:.:.:0,18,214 0/1:4,3:7:97:0|1:11860117_A_G:97,0,116 0/0:11,0:11:30:.:.:0,30,450 0/0:7,0:7:21:.:.:0,21,262 0/0:5,0:5:15:.:.:0,15,192 0/1:2,4:6:57:0|1:11860117_A_G:107,0,57 ./.:0,0:0 0/0:8,0:8:21:.:.:0,21,315 0/0:9,0:9:27:.:.:0,27,311 ./.:0,0:0 0/0:8,0:8:21:.:.:0,21,315 0/1:7,6:13:99:0|1:11860117_A_G:173,0,222 1/1:0,7:7:21:1|1:11860117_A_G:302,21,0 0/0:6,0:6:18:.:.:0,18,214 0/1:6,4:10:99:0|1:11860117_A_G:150,0,366 0/0:15,0:15:45:.:.:0,45,553 0/0:7,0:7:18:.:.:0,18,270 0/0:8,0:8:12:.:.:0,12,238 0/0:14,0:14:42:.:.:0,42,518 0/0:3,0:3:9:.:.:0,9,111 0/0:24,0:24:72:.:.:0,72,882 0/0:7,0:7:21:.:.:0,21,263 0/0:5,0:5:0:.:.:0,0,29 0/0:5,0:5:12:.:.:0,12,180 0/0:5,0:5:12:.:.:0,12,180 0/0:8,0:8:24:.:.:0,24,289 0/0:7,0:7:21:.:.:0,21,215 0/0:5,0:5:15:.:.:0,15,179 0/0:5,0:5:12:.:.:0,12,180 0/0:5,0:5:12:.:.:0,12,180 0/0:2,0:2:3:.:.:0,3,45 0/0:9,0:9:0:.:.:0,0,110 0/0:16,0:16:48:.:.:0,48,569 0/1:_G:164,0,189 1/1:0,4:4:15:1|1:11860117_A_G:183,15,0 0/0:10,0:10:24:.:.:0,24,360 0/0:6,0:6:18:.:.:0,18,225 0/0:5,0:5:15:.:.:0,15,164 0/0:5,0:5:9:.:.:0,9,135 0/0:7,0:7:21:.:.:0,21,241 0/0:4,0:4:0:.:.:0,0,70 0/0:6,0:6:15:.:.:0,15,225 0/0:17,0:17:0:.:.:0,0,365 0/0:10,0:10:27:.:.:0,27,405 0/0:11,0:11:24:.:.:0,24,360 0/0:8,0:8:21:.:.:0,21,315 0/0:7,0:7:15:.:.:0,15,225 0/0:8,0:8:24:.:.:0,24,291 0/0:5,0:5:0:.:.:0,0,31 0/1:5,4:9:99:0|1:11860117_A_G:128,0,165 0/0:14,0:14:42:.:.:0,42,479 0/0:3,0:3:9:.:.:0,9,99 0/0:1,0:1:3:.:.:0,3,29 0/1:7,5:12:99:0|1:11860117_A_G:105,0,253 0/0:19,0:19:45:.:.:0,45,675 0/0:4,0:4:12:.:.:0,12,141 0/0:8,0:8:24:.:.:0,24,309 0/1:8,5:13:99:0|1:11860117_A_G:149,0,301 0/0:7,0:7:18:.:.:0,18,270 0/0:14,0:14:42:.:.:0,42,504 0/0:13,0:13:36:.:.:0,36,540 0/0:4,0:4:9:.:.:0,9,135 0/0:8,0:8:18:.:.:0,18,270 0/0:19,0:19:51:.:.:0,51,765 0/0:5,0:5:9:.:.:0,9,135 0/0:2,0:2:3:.:.:0,3,45 0/0:4,0:4:12:.:.:0,12,141 0/0:2,0:2:0:.:.:0,0,10 ./.:2,0:2 0/0:12,0:12:33:.:.:0,33,495 0/0:15,0:15:36:.:.:0,36,540 0/0:11,0:11:27:.:.:0,27,405 0/1:1,5:6:42:0|1:11860117_A_G:357,0,42 0/0:17,0:17:39:.:.:0,39,585 0/0:26,0:26:72:.:.:0,72,1080 0/0:21,0:21:63:.:.:0,63,723 0/0:10,0:10:27:.:.:0,27,405 0/0:11,0:11:30:.:.:0,30,450 0/0:10,0:10:27:.:.:0,27,405 0/0:11,0:11:27:.:.:0,27,405 0/0:9,0:9:24:.:.:0,24,360 ./.:0,0:0 0/0:23,0:23:28:.:.:0,28,730 0/0:6,0:6:18:.:.:0,18,200 0/0:13,0:13:33:.:.:0,33,495 0/0:5,0:5:15:.:.:0,15,183 0/0:2,0:2:3:.:.:0,3,45 0/1:1,5:6:12:0|1:11860117_A_G:240,0,12 0/0:14,0:14:36:.:.:0,36,540 0/0:8,0:8:24:.:.:0,24,299 ./.:0,0:0 0/1:10,5:15:99:0|1:11860117_A_G:145,0,309 0/0:7,0:7:18:.:.:0,18,270 0/0:8,0:8:15:.:.:0,15,225 0/0:2,0:2:3:.:.:0,3,45 0/0:7,0:7:21:.:.:0,21,237 0/0:2,0:2:6:.:.:0,6,64 1 11860120 rs11121832 T C 21955.66 . AC=114;AF=0.679;AN=168;BaseQRankSum=0.550;ClippingRankSum=0.135;DB;DP=878;FS=0.000;InbreedingCoeff=0.2867;MLEAC=122;MLEAF=0.726;MQ=58.43;MQRankSum=-5.500e-01;QD=31.96;ReadPosRankSum=-5.500e-01;SOR=1.591 GT:AD:DP:GQ:PGT:PID:PL 0/1:5,5:10:99:.:.:161,0,110 1/1:0,15:15:45:.:.:534,45,0 0/0:6,0:6:0:.:.:0,0,148 1/1:0,7:7:21:.:.:267,21,0 1/1:0,6:6:21:1|1:11860117_A_G:280,21,0 1/1:0,10:10:30:.:.:369,30,0 0/0:7,0:7:0:.:.:0,0,34 1/1:0,5:5:15:.:.:192,15,0 1/1:0,8:8:24:1|1:11860117_A_G:319,24,0 ./.:0,0:0 0/1:3,4:7:89:.:.:125,0,89 0/0:10,0:10:0:.:.:0,0,223 ./.:0,0:0 1/1:0,8:8:24:.:.:300,24,0 1/1:0,12:12:36:1|1:11860117_A_G:489,36,0 1/1:0,6:6:21:1|1:11860117_A_G:302,21,0 0/0:6,0:6:18:.:.:0,18,214 0/1:5,4:9:99:0|1:11860117_A_G:150,0,366 1/1:0,16:16:46:.:.:486,46,0 1/1:0,7:7:21:.:.:252,21,0 1/1:0,7:7:21:.:.:263,21,0 0/1:11,5:16:99:.:.:140,0,344 ./.:4,0:4 1/1:0,25:25:75:.:.:939,75,0 1/1:0,7:7:21:.:.:271,21,0 ./.:6,0:6 ./.:5,0:5 1/1:0,6:6:18:.:.:219,18,0 1/1:0,8:8:24:.:.:311,24,0 1/1:0,7:7:21:.:.:240,21,0 0/0:5,0:5:0:.:.:0,0,35 1/1:0,7:7:21:.:.:257,21,0 1/1:0,5:5:15:.:.:183,15,0 ./.:1,0:1 1/1:0,7:7:21:.:.:270,21,0 0/1:8,7:15:99:.:.:222,0,241 1/1:0,9:9:30:1|1:11860117_A_G:424,30,0 1/1:0,4:4:15:1|1:11860117_A_G:183,15,0 0/1:3,7:10:78:.:.:235,0,78 0/0:7,0:7:0:.:.:0,0,40 0/0:5,0:5:15:.:.:0,15,164 1/1:0,4:4:12:.:.:153,12,0 1/1:0,7:7:21:.:.:274,21,0 ./.:5,0:5 0/1:1,5:6:21:.:.:153,0,21 1/1:0,14:14:42:.:.:474,42,0 1/1:0,11:11:33:.:.:419,33,0 1/1:0,11:11:33:.:.:404,33,0 0/1:3,4:7:87:.:.:128,0,87 0/1:2,8:10:45:.:.:263,0,45 0/1:1,7:8:16:.:.:232,0,16 ./.:5,0:5 1/1:0,9:9:30:1|1:11860117_A_G:382,30,0 0/1:4,10:14:99:.:.:343,0,107 0/0:4,0:4:0:.:.:0,0,74 ./.:1,0:1 0/1:1,12:13:1:0|1:11860117_A_G:420,0,1 1/1:0,18:18:54:.:.:620,54,0 1/1:0,4:4:12:.:.:115,12,0 0/0:8,0:8:24:.:.:0,24,309 1/1:1,13:14:3:1|1:11860117_A_G:490,3,0 0/1:2,7:9:50:.:.:238,0,50 0/0:14,0:14:42:.:.:0,42,504 1/1:0,12:12:36:.:.:456,36,0 ./.:3,0:3 0/0:8,0:8:21:.:.:0,21,315 0/0:19,0:19:45:.:.:0,45,675 0/0:5,0:5:0:.:.:0,0,37 0/0:3,0:3:9:.:.:0,9,97 1/1:0,4:4:12:.:.:137,12,0 ./.:2,0:2 ./.:2,0:2 0/1:7,5:12:99:.:.:128,0,227 1/1:0,16:16:48:.:.:599,48,0 1/1:0,11:11:33:.:.:417,33,0 0/1:1,12:13:36:0|1:11860117_A_G:413,0,36 0/1:8,7:15:99:.:.:226,0,260 1/1:0,28:28:84:.:.:1035,84,0 0/0:22,0:22:0:.:.:0,0,590 1/1:0,10:10:30:.:.:398,30,0 0/1:3,7:10:79:.:.:236,0,79 0/0:10,0:10:27:.:.:0,27,405 1/1:0,11:11:33:.:.:424,33,0 1/1:0,10:10:30:.:.:365,30,0 ./.:0,0:0 1/1:0,19:19:57:.:.:711,57,0 0/0:6,0:6:0:.:.:0,0,150 1/1:0,11:11:33:.:.:391,33,0 1/1:0,7:7:21:.:.:266,21,0 1/1:0,4:4:12:.:.:125,12,0 0/1:0,6:6:12:0|1:11860117_A_G:240,0,12 1/1:0,17:17:51:.:.:595,51,0 1/1:0,9:9:27:.:.:324,27,0 ./.:0,0:0 1/1:0,17:17:51:1|1:11860117_A_G:678,51,0 0/1:2,7:9:45:.:.:224,0,45 0/1:5,5:10:99:.:.:131,0,157 ./.:2,0:2 1/1:0,8:8:24:.:.:276,24,0 ./.:3,0:3 1 11860385 . G T 429.90 . AC=1;AF=5.051e-03;AN=198;BaseQRankSum=-4.550e-01;ClippingRankSum=-2.000e-02;DP=3208;FS=2.222;InbreedingCoeff=-0.0096;MLEAC=1;MLEAF=5.051e-03;MQ=59.25;MQRankSum=-6.520e-01;QD=13.87;ReadPosRankSum=-8.890e-01;SOR=0.293 GT:AD:DP:GQ:PL 0/0:37,0:37:84:0,84,1260 0/0:50,0:50:99:0,114,1710 0/0:42,0:42:99:0,99,1485 0/0:44,0:44:93:0,93,1395 0/1:16,15:31:99:472,0,519 0/0:37,0:37:99:0,99,1485 0/0:28,0:28:60:0,60,900 0/0:27,0:27:60:0,60,900 0/0:38,0:38:90:0,90,1350 0/0:47,0:47:90:0,90,1350 0/0:39,0:39:75:0,75,1125 0/0:28,0:28:57:0,57,855 0/0:1,0:1:3:0,3,37 0/0:39,0:39:87:0,87,1305 0/0:28,0:28:60:0,60,900 0/0:35,0:35:90:0,90,1350 0/0:27,0:27:60:0,60,900 0/0:29,0:29:72:0,72,1080 0/0:39,0:39:99:0,99,1485 0/0:40,0:40:90:0,90,1350 0/0:40,0:40:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:26,0:26:63:0,63,945 0/0:45,0:45:99:0,102,1530 0/0:28,0:28:60:0,60,900 0/0:42,0:42:99:0,108,1800 0/0:38,0:38:84:0,84,1260 0/0:19,0:19:39:0,39,585 0/0:17,0:17:36:0,36,540 0/0:26,0:26:57:0,57,855 0/0:22,0:22:45:0,45,675 0/0:21,0:21:42:0,42,630 0/0:22,0:22:45:0,45,675 0/0:24,0:24:42:0,42,630 0/0:31,0:31:63:0,63,945 0/0:37,0:37:99:0,99,1270 0/0:30,0:30:72:0,72,1080 0/0:31,0:31:72:0,72,1080 0/0:27,0:27:51:0,51,765 0/0:30,0:30:66:0,66,990 0/0:26,0:26:66:0,66,990 0/0:18,0:18:36:0,36,540 0/0:41,0:41:99:0,99,1485 0/0:32,0:32:72:0,72,1080 0/0:26,0:26:60:0,60,900 0/0:46,0:46:99:0,99,1485 0/0:35,0:35:75:0,75,1125 0/0:36,0:36:99:0,99,1485 0/0:34,0:34:84:0,84,1260 0/0:18,0:18:33:0,33,495 0/0:28,0:28:63:0,63,945 0/0:28,0:28:57:0,57,855 0/0:34,0:34:81:0,81,1215 0/0:29,0:29:66:0,66,990 0/0:57,0:57:90:0,90,1350 0/0:4,0:4:12:0,12,118 0/0:44,0:44:99:0,99,1485 0/0:38,0:38:99:0,99,1401 0/0:16,0:16:42:0,42,630 0/0:24,0:24:60:0,60,900 0/0:43,0:43:96:0,96,1440 0/0:34,0:34:72:0,72,1080 0/0:34,0:34:81:0,81,1215 0/0:22,0:22:51:0,51,765 0/0:25,0:25:57:0,57,855 0/0:43,0:43:90:0,90,1350 0/0:24,0:24:48:0,48,720 0/0:25,0:25:60:0,60,900 0/0:33,0:33:81:0,81,1215 0/0:23,0:23:54:0,54,810 0/0:24,0:24:59:0,59,813 0/0:15,0:15:33:0,33,495 0/0:41,0:41:90:0,90,1350 0/0:47,0:47:99:0,105,1575 0/0:41,0:41:99:0,99,1485 0/0:43,0:43:99:0,99,1449 0/0:41,0:41:90:0,90,1350 0/0:45,0:45:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:33,0:33:81:0,81,1215 0/0:40,0:40:99:0,99,1485 0/0:49,0:49:93:0,93,1395 0/0:32,0:32:57:0,57,855 0/0:27,0:27:60:0,60,900 0/0:10,0:10:0:0,0,305 0/0:49,0:49:99:0,102,1530 0/0:41,0:41:99:0,105,1575 0/0:37,0:37:99:0,100,1309 0/0:23,0:23:48:0,48,720 0/0:8,0:8:21:0,21,315 0/0:34,0:34:60:0,60,900 0/0:43,0:43:99:0,99,1449 0/0:12,0:12:24:0,24,360 ./.:0,0:0 0/0:47,0:47:93:0,93,1395 0/0:39,0:39:99:0,99,1434 0/0:24,0:24:39:0,39,585 0/0:25,0:25:60:0,60,900 0/0:47,0:47:75:0,75,1125 0/0:51,0:51:99:0,99,1485 1 11860458 rs2066471 C T 12718.50 . AC=33;AF=0.168;AN=196;BaseQRankSum=2.33;ClippingRankSum=-1.160e-01;DB;DP=2485;FS=0.000;InbreedingCoeff=0.2144;MLEAC=33;MLEAF=0.168;MQ=59.07;MQRankSum=-1.440e-01;QD=20.16;ReadPosRankSum=0.400;SOR=1.333 GT:AD:DP:GQ:PL 0/1:17,10:27:99:286,0,500 0/0:37,0:37:81:0,81,1215 0/1:16,21:37:99:579,0,407 0/0:28,0:28:66:0,66,990 0/0:26,0:26:60:0,60,900 0/0:41,0:41:88:0,88,1265 0/1:16,10:26:99:299,0,476 0/0:27,0:27:72:0,72,1080 0/0:16,0:16:42:0,42,630 0/0:14,0:14:30:0,30,450 0/1:7,14:21:99:458,0,167 0/1:12,8:20:99:249,0,385 ./.:1,0:1 0/0:25,0:25:60:0,60,900 0/0:20,0:20:48:0,48,720 0/0:19,0:19:57:0,57,613 0/0:27,0:27:54:0,54,810 0/1:13,23:36:99:750,0,335 0/0:55,0:55:80:0,80,1603 0/0:24,0:24:60:0,60,900 0/0:26,0:26:63:0,63,945 0/0:30,0:30:81:0,81,1215 0/0:18,0:18:39:0,39,585 0/0:45,0:45:99:0,102,1530 0/0:19,0:19:45:0,45,675 0/0:51,0:51:99:0,99,1485 0/1:11,11:22:99:364,0,325 0/0:17,0:17:39:0,39,585 0/0:16,0:16:36:0,36,540 0/0:12,0:12:24:0,24,360 0/1:12,11:23:99:343,0,359 0/0:12,0:12:33:0,33,495 0/0:21,0:21:54:0,54,810 0/0:13,0:13:30:0,30,450 0/0:37,0:37:81:0,81,1215 0/1:21,26:47:99:782,0,470 0/0:24,0:24:54:0,54,810 0/0:20,0:20:51:0,51,765 0/1:10,13:23:99:432,0,261 0/1:19,11:30:99:308,0,579 1/1:0,11:11:33:397,33,0 0/0:8,0:8:18:0,18,270 0/0:29,0:29:63:0,63,945 0/0:8,0:8:21:0,21,315 0/0:11,0:11:0:0,0,178 0/0:30,0:30:72:0,72,964 0/0:21,0:21:42:0,42,630 0/0:36,0:36:99:0,99,1485 0/0:30,0:30:51:0,51,956 0/1:8,7:15:99:232,0,243 0/0:17,0:17:48:0,48,720 0/0:16,0:16:39:0,39,585 0/0:19,0:19:51:0,51,765 0/1:7,10:17:99:324,0,196 0/0:22,0:22:51:0,51,765 0/0:1,0:1:3:0,3,28 0/0:44,0:44:99:0,99,1485 0/0:38,0:38:99:0,99,1401 0/0:14,0:14:36:0,36,540 1/1:0,17:17:51:641,51,0 0/0:29,0:29:66:0,66,990 0/1:10,13:23:99:432,0,287 1/1:0,25:25:75:920,75,0 0/0:19,0:19:48:0,48,720 0/0:32,0:32:81:0,81,1215 1/1:0,23:23:69:854,69,0 0/1:10,11:21:99:360,0,274 0/1:8,9:17:99:298,0,222 0/1:12,10:22:99:313,0,308 0/1:8,8:16:99:234,0,219 0/0:23,0:23:60:0,60,900 0/0:12,0:12:21:0,21,315 0/0:26,0:26:60:0,60,900 0/0:35,0:35:78:0,78,1170 0/0:41,0:41:99:0,99,1485 0/0:50,0:50:42:0,42,1389 0/1:9,19:28:99:643,0,231 0/0:45,0:45:99:0,99,1485 1/1:1,45:46:99:1622,128,0 0/0:17,0:17:45:0,45,675 0/0:32,0:32:63:0,63,945 1/1:1,14:15:14:462,14,0 0/0:32,0:32:69:0,69,1035 0/0:14,0:14:33:0,33,495 0/1:2,4:6:49:134,0,49 0/0:49,0:49:99:0,102,1530 0/0:35,0:35:99:0,99,1485 0/0:29,0:29:57:0,57,855 0/0:11,0:11:30:0,30,450 0/0:15,0:15:7:0,7,428 0/0:27,0:27:66:0,66,990 0/0:43,0:43:99:0,99,1449 0/0:21,0:21:45:0,45,675 ./.:0,0:0 0/0:36,0:36:90:0,90,1350 0/0:32,0:32:81:0,81,1215 0/1:6,11:17:99:332,0,156 0/0:14,0:14:39:0,39,585 0/0:27,0:27:42:0,42,630 0/0:29,0:29:54:0,54,810 1 11860465 rs13306567 C G 3564.46 . AC=9;AF=0.045;AN=198;BaseQRankSum=-4.150e-01;ClippingRankSum=-2.840e-01;DB;DP=2362;FS=0.000;InbreedingCoeff=-0.0544;MLEAC=9;MLEAF=0.045;MQ=59.46;MQRankSum=0.537;QD=15.04;ReadPosRankSum=0.433;SOR=0.685 GT:AD:DP:GQ:PL 0/0:27,0:27:60:0,60,900 0/1:14,15:29:99:480,0,449 0/0:36,0:36:81:0,81,1215 0/0:27,0:27:57:0,57,855 0/0:23,0:23:51:0,51,708 0/0:43,0:43:89:0,89,1525 0/0:24,0:24:57:0,57,855 0/0:26,0:26:60:0,60,900 0/0:18,0:18:39:0,39,585 0/0:12,0:12:30:0,30,450 0/0:18,0:18:42:0,42,630 0/0:20,0:20:39:0,39,585 0/0:1,0:1:3:0,3,32 0/1:11,13:24:99:420,0,330 0/0:20,0:20:42:0,42,630 0/0:21,0:21:42:0,42,630 0/1:11,8:19:99:256,0,332 0/0:35,0:35:81:0,81,1215 0/0:50,0:50:99:0,108,1620 0/0:24,0:24:54:0,54,810 0/0:27,0:27:60:0,60,900 0/0:31,0:31:0:0,0,919 0/0:20,0:20:48:0,48,720 0/0:45,0:45:99:0,102,1530 0/0:17,0:17:33:0,33,495 0/0:51,0:51:99:0,99,1485 0/0:20,0:20:51:0,51,765 0/0:16,0:16:36:0,36,540 0/0:15,0:15:21:0,21,315 0/0:10,0:10:21:0,21,315 0/0:25,0:25:55:0,55,905 0/0:13,0:13:30:0,30,450 0/0:20,0:20:42:0,42,630 0/1:9,5:14:99:141,0,277 0/0:31,0:31:75:0,75,1125 0/0:47,0:47:99:0,117,1414 0/0:22,0:22:57:0,57,855 0/0:20,0:20:48:0,48,720 0/0:18,0:18:48:0,48,720 0/0:28,0:28:45:0,45,675 0/0:9,0:9:18:0,18,270 0/0:10,0:10:24:0,24,360 0/0:25,0:25:45:0,45,675 0/0:11,0:11:24:0,24,360 0/0:13,0:13:33:0,33,495 0/0:33,0:33:81:0,81,1215 0/0:21,0:21:51:0,51,765 0/1:22,21:43:99:604,0,673 0/0:28,0:28:60:0,60,900 0/0:14,0:14:27:0,27,405 0/0:17,0:17:39:0,39,524 0/0:16,0:16:36:0,36,540 0/0:20,0:20:48:0,48,720 0/0:18,0:18:39:0,39,585 0/0:18,0:18:42:0,42,630 ./.:0,0:0 0/0:44,0:44:99:0,99,1485 0/0:38,0:38:99:0,99,1401 0/0:14,0:14:36:0,36,540 0/0:13,0:13:33:0,33,495 0/0:31,0:31:69:0,69,1035 0/0:22,0:22:45:0,45,675 0/0:24,0:24:54:0,54,810 0/0:17,0:17:39:0,39,585 0/0:31,0:31:72:0,72,1080 0/0:24,0:24:57:0,57,855 0/0:18,0:18:30:0,30,450 0/0:19,0:19:45:0,45,675 0/0:15,0:15:36:0,36,540 0/0:18,0:18:45:0,45,675 0/0:22,0:22:48:0,48,720 0/0:10,0:10:24:0,24,360 0/0:21,0:21:51:0,51,765 0/1:14,15:29:99:450,0,443 0/0:41,0:41:99:0,99,1485 0/1:21,19:40:99:620,0,623 0/0:30,0:30:81:0,81,1215 0/0:45,0:45:99:0,99,1485 0/0:43,0:43:90:0,90,1350 0/0:21,0:21:48:0,48,720 0/0:26,0:26:42:0,42,630 0/0:16,0:16:33:0,33,495 0/1:13,17:30:99:573,0,430 0/0:14,0:14:30:0,30,450 0/0:6,0:6:12:0,12,180 0/0:49,0:49:99:0,102,1530 0/0:37,0:37:90:0,90,1350 0/0:24,0:24:60:0,60,900 0/1:4,5:9:99:165,0,122 0/0:14,0:14:33:0,33,495 0/0:24,0:24:60:0,60,900 0/0:43,0:43:99:0,99,1449 0/0:18,0:18:36:0,36,540 0/0:1,0:1:3:0,3,27 0/0:33,0:33:63:0,63,945 0/0:27,0:27:72:0,72,1080 0/0:14,0:14:27:0,27,405 0/0:15,0:15:42:0,42,630 0/0:18,0:18:30:0,30,450 0/0:28,0:28:54:0,54,810 1 11862764 rs55645287 C CT 333.12 . AC=4;AF=0.027;AN=148;BaseQRankSum=-3.610e-01;ClippingRankSum=0.876;DB;DP=316;FS=0.000;InbreedingCoeff=0.0447;MLEAC=4;MLEAF=0.027;MQ=60.00;MQRankSum=0.361;QD=17.53;ReadPosRankSum=0.731;SOR=1.981 GT:AD:DP:GQ:PL ./.:0,0:0 0/0:7,0:7:18:0,18,270 0/0:4,0:4:12:0,12,145 0/0:5,0:5:15:0,15,176 0/0:4,0:4:0:0,0,82 0/0:8,0:8:24:0,24,278 0/0:3,0:3:9:0,9,104 ./.:0,0:0 ./.:1,0:1 ./.:0,0:0 ./.:0,0:0 0/0:4,0:4:9:0,9,135 ./.:0,0:0 0/0:4,0:4:12:0,12,151 ./.:0,0:0 ./.:3,0:3 0/0:3,0:3:9:0,9,111 ./.:3,0:3 0/0:1,0:1:3:0,3,41 ./.:0,0:0 0/0:3,0:3:9:0,9,113 0/0:7,0:7:20:0,20,213 0/0:3,0:3:9:0,9,104 0/0:6,0:6:18:0,18,208 0/0:2,0:2:6:0,6,50 ./.:2,0:2 ./.:0,0:0 0/0:5,0:5:12:0,12,180 0/0:1,0:1:3:0,3,30 0/0:2,0:2:6:0,6,71 0/0:2,0:2:6:0,6,70 0/0:1,0:1:3:0,3,38 0/0:5,0:5:15:0,15,182 ./.:2,0:2 1/1:0,5:5:15:163,15,0 0/0:10,0:10:29:0,29,315 0/0:4,0:4:0:0,0,87 ./.:5,0:5 0/0:2,0:2:6:0,6,62 0/0:1,0:1:3:0,3,32 0/0:4,0:4:12:0,12,131 0/0:3,0:3:9:0,9,104 0/0:2,0:2:6:0,6,68 0/1:1,4:5:17:115,0,17 ./.:0,0:0 0/1:4,5:9:96:134,0,96 0/0:4,0:4:12:0,12,138 0/0:2,0:2:6:0,6,60 0/0:6,0:6:15:0,15,225 0/0:1,0:1:3:0,3,29 0/0:4,0:4:9:0,9,135 ./.:0,0:0 ./.:0,0:0 0/0:2,0:2:6:0,6,70 ./.:0,0:0 0/0:1,0:1:3:0,3,28 0/0:3,0:3:0:0,0,48 0/0:7,0:7:21:0,21,248 ./.:1,0:1 ./.:1,0:1 ./.:4,0:4 0/0:2,0:2:6:0,6,65 0/0:4,0:4:9:0,9,135 0/0:4,0:4:12:0,12,144 0/0:2,0:2:6:0,6,68 0/0:3,0:3:9:0,9,117 0/0:5,0:5:12:0,12,180 0/0:8,0:8:24:0,24,264 ./.:0,0:0 0/0:1,0:1:3:0,3,31 0/0:2,0:2:0:0,0,3 0/0:3,0:3:0:0,0,44 0/0:1,0:1:3:0,3,36 0/0:4,0:4:9:0,9,135 0/0:2,0:2:3:0,3,45 ./.:6,0:6 0/0:3,0:3:9:0,9,106 0/0:15,0:15:33:0,33,495 0/0:4,0:4:9:0,9,135 0/0:8,0:8:11:0,11,218 0/0:2,0:2:6:0,6,74 0/0:3,0:3:6:0,6,90 0/0:2,0:2:6:0,6,77 0/0:4,0:4:12:0,12,115 0/0:1,0:1:3:0,3,33 0/0:8,0:8:18:0,18,270 0/0:4,0:4:12:0,12,159 0/0:6,0:6:18:0,18,206 0/0:4,0:4:9:0,9,135 0/0:2,0:2:3:0,3,45 0/0:1,0:1:3:0,3,35 0/0:4,0:4:12:0,12,156 0/0:5,0:5:15:0,15,183 ./.:0,0:0 ./.:2,0:2 0/0:4,0:4:12:0,12,136 0/0:5,0:5:15:0,15,178 0/0:4,0:4:9:0,9,135 0/0:1,0:1:3:0,3,35 ./.:0,0:0 1 11862778 rs17367504 A G 850.41 . AC=10;AF=0.057;AN=174;BaseQRankSum=-6.890e-01;ClippingRankSum=0.731;DB;DP=410;FS=0.000;InbreedingCoeff=0.1231;MLEAC=11;MLEAF=0.063;MQ=58.05;MQRankSum=0.736;QD=20.25;ReadPosRankSum=0.736;SOR=1.136 GT:AD:DP:GQ:PL ./.:0,0:0 0/0:8,0:8:0:0,0,72 0/0:8,0:8:21:0,21,315 0/0:4,0:4:9:0,9,135 0/0:5,0:5:0:0,0,55 0/0:6,0:6:15:0,15,225 0/0:2,0:2:6:0,6,69 ./.:0,0:0 ./.:2,0:2 ./.:0,0:0 ./.:0,0:0 0/0:3,0:3:9:0,9,114 ./.:0,0:0 0/0:4,0:4:0:0,0,9 ./.:5,0:5 ./.:2,0:2 0/0:3,0:3:3:0,3,45 0/0:5,0:5:0:0,0,41 0/0:2,0:2:6:0,6,69 0/0:2,0:2:6:0,6,66 0/0:3,0:3:9:0,9,113 0/0:7,0:7:18:0,18,270 0/0:3,0:3:6:0,6,90 0/0:8,0:8:21:0,21,315 0/0:6,0:6:18:0,18,232 0/1:1,2:3:23:51,0,23 0/0:3,0:3:9:0,9,108 0/0:4,0:4:12:0,12,131 0/0:2,0:2:6:0,6,68 0/0:3,0:3:9:0,9,92 0/0:4,0:4:12:0,12,145 0/0:2,0:2:6:0,6,69 0/0:6,0:6:18:0,18,227 ./.:1,0:1 1/1:0,5:5:15:180,15,0 0/0:10,0:10:18:0,18,270 0/0:3,0:3:0:0,0,59 1/1:0,2:2:6:67,6,0 0/0:1,0:1:3:0,3,38 0/0:3,0:3:9:0,9,104 0/0:5,0:5:15:0,15,176 0/0:3,0:3:6:0,6,90 0/0:2,0:2:6:0,6,80 0/1:1,4:5:19:127,0,19 0/0:1,0:1:3:0,3,32 0/1:7,5:12:99:128,0,180 0/0:5,0:5:15:0,15,180 0/0:5,0:5:0:0,0,18 0/0:3,0:3:9:0,9,114 0/0:3,0:3:9:0,9,89 0/0:4,0:4:12:0,12,128 ./.:2,0:2 ./.:1,0:1 0/0:2,0:2:6:0,6,71 0/0:1,0:1:3:0,3,28 0/0:1,0:1:3:0,3,28 0/0:4,0:4:0:0,0,98 0/0:8,0:8:18:0,18,270 0/0:4,0:4:12:0,12,123 0/0:3,0:3:9:0,9,113 0/0:7,0:7:0:0,0,35 0/0:3,0:3:9:0,9,103 0/0:2,0:2:6:0,6,74 0/0:8,0:8:24:0,24,285 0/0:3,0:3:9:0,9,123 0/0:6,0:6:15:0,15,225 0/0:5,0:5:6:0,6,90 0/0:9,0:9:21:0,21,315 0/0:1,0:1:3:0,3,27 0/0:3,0:3:9:0,9,103 0/0:3,0:3:0:0,0,44 0/0:3,0:3:9:0,9,107 ./.:0,0:0 0/1:1,5:6:24:150,0,24 0/0:5,0:5:15:0,15,176 1/1:0,9:9:27:289,27,0 0/0:6,0:6:18:0,18,231 0/0:16,0:16:36:0,36,540 0/0:7,0:7:21:0,21,249 0/0:7,0:7:18:0,18,270 0/0:3,0:3:9:0,9,108 0/0:3,0:3:9:0,9,103 0/0:6,0:6:0:0,0,147 0/0:4,0:4:12:0,12,136 0/0:1,0:1:3:0,3,33 0/0:10,0:10:27:0,27,405 0/0:6,0:6:18:0,18,213 0/0:7,0:7:21:0,21,253 0/0:4,0:4:0:0,0,12 0/0:1,0:1:3:0,3,37 0/0:3,0:3:0:0,0,45 0/0:4,0:4:9:0,9,135 0/0:7,0:7:21:0,21,261 ./.:0,0:0 0/0:2,0:2:0:0,0,10 0/0:7,0:7:21:0,21,273 0/0:6,0:6:15:0,15,225 0/0:4,0:4:12:0,12,149 0/0:3,0:3:9:0,9,104 0/0:5,0:5:15:0,15,147 1 11863057 rs2066470 G A 15872.66 . AC=22;AF=0.110;AN=200;BaseQRankSum=2.75;ClippingRankSum=0.026;DB;DP=3702;FS=0.519;InbreedingCoeff=-0.0235;MLEAC=22;MLEAF=0.110;MQ=59.05;MQRankSum=0.133;QD=16.80;ReadPosRankSum=0.114;SOR=0.741 GT:AD:DP:GQ:PL 0/0:37,0:37:99:0,102,1530 0/0:40,0:40:99:0,99,1485 0/0:41,0:41:99:0,102,1530 0/0:46,0:46:99:0,114,1710 0/1:24,17:41:99:542,0,726 0/0:35,0:35:99:0,102,1274 0/0:34,0:34:60:0,60,900 0/0:31,0:31:72:0,72,1080 0/1:13,14:27:99:447,0,387 0/0:45,0:45:99:0,105,1575 0/0:29,0:29:63:0,63,945 0/0:24,0:24:51:0,51,765 0/0:5,0:5:15:0,15,175 0/0:39,0:39:99:0,99,1485 0/1:13,16:29:99:480,0,388 1/1:0,40:40:99:1471,120,0 0/0:29,0:29:57:0,57,855 0/1:24,13:37:99:369,0,744 0/0:43,0:43:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:41,0:41:99:0,102,1530 0/0:40,0:40:99:0,101,1530 0/0:34,0:34:84:0,84,1260 0/0:40,0:40:99:0,99,1485 0/0:35,0:35:90:0,90,1350 0/1:49,70:119:99:1944,0,1206 0/0:34,0:34:90:0,90,1350 0/0:40,0:40:99:0,102,1530 0/0:39,0:39:99:0,99,1485 0/0:32,0:32:81:0,81,1215 0/0:34,0:34:84:0,84,1260 0/0:42,0:42:99:0,99,1483 0/0:28,0:28:60:0,60,900 0/0:34,0:34:90:0,90,1350 0/1:20,19:39:99:612,0,570 0/0:42,0:42:99:0,99,1485 0/1:17,19:36:99:636,0,489 0/1:12,14:26:99:438,0,354 0/0:30,0:30:77:0,77,1085 0/0:38,0:38:95:0,95,1440 0/0:21,0:21:54:0,54,810 0/0:25,0:25:60:0,60,900 0/0:28,0:28:72:0,72,1080 0/1:10,14:24:99:434,0,279 0/0:36,0:36:99:0,99,1485 0/1:30,42:72:99:1335,0,792 0/0:38,0:38:99:0,99,1446 0/0:36,0:36:99:0,99,1485 0/0:39,0:39:81:0,81,1215 0/0:35,0:35:84:0,84,1260 0/0:39,0:39:81:0,81,1215 0/1:21,11:32:99:315,0,639 0/1:16,22:38:99:757,0,434 0/0:35,0:35:72:0,72,1080 0/0:38,0:38:81:0,81,1215 0/0:3,0:3:9:0,9,94 0/1:34,43:77:99:1374,0,867 0/0:40,0:40:99:0,99,1485 0/0:32,0:32:81:0,81,1115 0/0:26,0:26:60:0,60,900 0/1:24,22:46:99:684,0,727 0/0:40,0:40:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:30,0:30:76:0,76,1055 0/0:33,0:33:72:0,72,1080 0/0:38,0:38:90:0,90,1350 0/0:30,0:30:81:0,81,1215 0/0:38,0:38:75:0,75,1260 0/0:28,0:28:66:0,66,990 0/0:17,0:17:42:0,42,630 0/1:14,22:36:99:685,0,399 0/1:24,16:40:99:472,0,703 0/0:41,0:41:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:37,0:37:99:0,99,1485 0/1:38,33:71:99:1042,0,1090 0/0:39,0:39:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:41,0:41:99:0,105,1443 0/0:31,0:31:81:0,81,1168 0/0:41,0:41:99:0,99,1485 0/0:37,0:37:99:0,99,1485 0/0:41,0:41:96:0,96,1440 0/0:41,0:41:90:0,90,1350 0/0:14,0:14:39:0,39,585 0/0:47,0:47:99:0,102,1530 0/0:41,0:41:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:34,0:34:81:0,81,1215 0/1:14,15:29:99:486,0,395 0/1:18,19:37:99:599,0,516 0/0:37,0:37:99:0,99,1406 0/0:27,0:27:72:0,72,1080 0/0:4,0:4:12:0,12,129 0/1:18,31:49:99:1003,0,460 0/0:41,0:41:99:0,99,1347 0/0:37,0:37:84:0,84,1260 0/0:36,0:36:81:0,81,1215 0/0:39,0:39:81:0,81,1215 0/0:48,0:48:99:0,102,1530 1 11866183 rs13306560 C T 223.71 . AC=2;AF=0.012;AN=164;BaseQRankSum=0.731;ClippingRankSum=-7.310e-01;DB;DP=314;FS=4.616;InbreedingCoeff=-0.1186;MLEAC=2;MLEAF=0.012;MQ=60.00;MQRankSum=0.731;QD=20.34;ReadPosRankSum=0.736;SOR=3.056 GT:AD:DP:GQ:PL ./.:0,0:0 ./.:6,0:6 0/0:2,0:2:3:0,3,45 0/0:3,0:3:6:0,6,90 0/0:4,0:4:9:0,9,135 0/0:5,0:5:15:0,15,179 0/0:1,0:1:3:0,3,34 0/0:4,0:4:6:0,6,90 0/0:2,0:2:6:0,6,66 0/0:4,0:4:12:0,12,144 0/0:1,0:1:3:0,3,30 0/0:1,0:1:3:0,3,31 0/0:13,0:13:30:0,30,450 ./.:5,0:5 0/0:1,0:1:3:0,3,32 0/0:2,0:2:3:0,3,45 0/0:5,0:5:0:0,0,46 0/0:4,0:4:12:0,12,138 0/0:2,0:2:6:0,6,71 0/0:3,0:3:6:0,6,90 0/0:1,0:1:3:0,3,29 0/0:6,0:6:15:0,15,225 0/0:2,0:2:6:0,6,58 0/0:8,0:8:12:0,12,180 0/0:1,0:1:3:0,3,33 0/0:9,0:9:3:0,3,45 0/0:3,0:3:9:0,9,103 0/0:2,0:2:3:0,3,45 0/0:1,0:1:3:0,3,34 0/0:2,0:2:6:0,6,67 0/0:3,0:3:6:0,6,90 0/0:1,0:1:3:0,3,34 ./.:0,0:0 0/1:1,4:5:16:122,0,16 0/0:5,0:5:12:0,12,180 0/0:1,0:1:3:0,3,33 ./.:0,0:0 0/0:1,0:1:3:0,3,29 0/0:1,0:1:3:0,3,33 0/0:3,0:3:9:0,9,98 0/0:1,0:1:3:0,3,39 0/0:2,0:2:6:0,6,66 0/0:2,0:2:6:0,6,64 ./.:0,0:0 0/0:4,0:4:3:0,3,45 0/0:2,0:2:6:0,6,59 0/0:1,0:1:3:0,3,31 0/0:4,0:4:9:0,9,135 0/0:3,0:3:3:0,3,45 0/0:2,0:2:6:0,6,57 0/0:3,0:3:6:0,6,90 ./.:0,0:0 ./.:0,0:0 0/0:2,0:2:3:0,3,45 0/0:10,0:10:15:0,15,225 0/0:7,0:7:12:0,12,180 0/0:5,0:5:12:0,12,180 0/0:6,0:6:12:0,12,180 ./.:1,0:1 0/0:1,0:1:3:0,3,33 0/0:3,0:3:6:0,6,90 0/0:3,0:3:9:0,9,99 0/0:2,0:2:6:0,6,62 0/0:6,0:6:12:0,12,180 0/0:3,0:3:6:0,6,90 0/0:4,0:4:9:0,9,135 0/0:4,0:4:12:0,12,142 ./.:0,0:0 0/0:1,0:1:3:0,3,34 ./.:0,0:0 0/0:7,0:7:18:0,18,270 0/0:4,0:4:12:0,12,141 0/0:5,0:5:15:0,15,186 ./.:2,0:2 0/0:1,0:1:3:0,3,31 ./.:6,0:6 0/0:2,0:2:6:0,6,78 0/0:8,0:8:15:0,15,225 0/0:7,0:7:18:0,18,270 0/0:2,0:2:6:0,6,71 0/0:6,0:6:15:0,15,225 0/0:4,0:4:0:0,0,52 0/1:1,5:6:22:155,0,22 0/0:3,0:3:6:0,6,90 ./.:0,0:0 0/0:10,0:10:24:0,24,360 0/0:2,0:2:3:0,3,45 ./.:0,0:0 ./.:0,0:0 ./.:0,0:0 0/0:2,0:2:6:0,6,64 0/0:14,0:14:21:0,21,315 0/0:3,0:3:9:0,9,93 0/0:4,0:4:9:0,9,135 0/0:6,0:6:18:0,18,216 0/0:1,0:1:3:0,3,40 0/0:2,0:2:6:0,6,68 0/0:1,0:1:3:0,3,35 0/0:1,0:1:3:0,3,39 ./.:0,0:0 1 26736906 . TGCA T 52.85 . AC=2;AF=0.010;AN=196;BaseQRankSum=1.40;ClippingRankSum=-1.294e+00;DP=1992;FS=1.921;InbreedingCoeff=-0.0341;MLEAC=1;MLEAF=5.102e-03;MQ=53.83;MQRankSum=-2.165e+00;QD=1.39;ReadPosRankSum=-1.553e+00;SOR=1.158 GT:AD:DP:GQ:PGT:PID:PL 0/0:18,0:18:45:.:.:0,45,675 0/0:27,0:27:12:.:.:0,12,800 0/0:28,0:28:6:.:.:0,6,735 0/0:19,0:19:39:.:.:0,39,585 0/0:14,0:14:0:.:.:0,0,349 0/0:35,0:35:12:.:.:0,12,1015 0/0:17,0:17:45:.:.:0,45,675 0/0:15,0:15:39:.:.:0,39,585 0/0:27,0:27:60:.:.:0,60,900 0/0:15,0:15:42:.:.:0,42,630 0/0:15,0:15:12:.:.:0,12,395 0/0:9,0:9:21:.:.:0,21,315 0/0:6,0:6:12:.:.:0,12,180 0/0:22,0:22:2:.:.:0,2,599 0/0:11,0:11:30:.:.:0,30,450 0/0:16,0:16:48:.:.:0,48,527 0/0:18,0:18:45:.:.:0,45,675 0/0:24,0:24:57:.:.:0,57,855 0/0:31,0:31:72:.:.:0,72,1080 0/0:22,0:22:48:.:.:0,48,720 0/0:17,0:17:51:.:.:0,51,611 0/0:23,0:23:48:.:.:0,48,720 0/0:19,0:19:42:.:.:0,42,630 0/0:41,0:41:90:.:.:0,90,1350 0/0:14,0:14:33:.:.:0,33,495 0/0:56,0:56:99:.:.:0,102,1530 0/0:15,0:15:42:.:.:0,42,630 0/0:14,0:14:36:.:.:0,36,540 0/0:9,0:9:0:.:.:0,0,226 0/0:18,0:18:36:.:.:0,36,540 0/0:16,0:16:33:.:.:0,33,495 0/0:14,0:14:30:.:.:0,30,450 0/0:13,0:13:33:.:.:0,33,495 0/0:11,0:11:1:.:.:0,1,287 0/0:27,0:27:57:.:.:0,57,855 0/0:27,0:27:43:.:.:0,43,833 0/0:11,0:11:30:.:.:0,30,450 0/0:34,0:34:84:.:.:0,84,1260 0/0:19,0:19:39:.:.:0,39,585 ./.:17,0:17 0/0:7,0:7:18:.:.:0,18,270 0/0:15,0:15:33:.:.:0,33,495 0/0:21,0:21:39:.:.:0,39,585 0/0:7,0:7:9:.:.:0,9,135 0/1:9,3:12:93:0|1:26736906_TGCA_T:93,0,1017 0/0:28,0:28:57:.:.:0,57,921 0/0:23,0:23:0:.:.:0,0,562 0/0:30,0:30:78:.:.:0,78,1170 0/0:12,0:12:30:.:.:0,30,450 0/0:14,0:14:36:.:.:0,36,540 0/0:18,0:18:17:.:.:0,17,494 0/0:20,0:20:51:.:.:0,51,765 0/0:12,0:12:8:.:.:0,8,352 0/0:22,0:22:39:.:.:0,39,585 0/0:32,0:32:0:.:.:0,0,877 ./.:0,0:0 0/0:33,0:33:5:.:.:0,5,878 0/0:38,0:38:80:.:.:0,80,1215 0/0:11,0:11:27:.:.:0,27,405 0/0:10,0:10:27:.:.:0,27,405 0/0:28,0:28:72:.:.:0,72,1080 0/0:18,0:18:22:.:.:0,22,565 0/0:18,0:18:36:.:.:0,36,540 0/0:9,0:9:18:.:.:0,18,270 0/0:14,0:14:30:.:.:0,30,450 0/0:25,0:25:45:.:.:0,45,675 0/0:17,0:17:18:.:.:0,18,524 0/0:18,0:18:45:.:.:0,45,675 0/0:9,0:9:27:.:.:0,27,324 0/0:6,0:6:18:.:.:0,18,207 0/0:27,0:27:60:.:.:0,60,900 0/0:22,0:22:38:.:.:0,38,648 0/0:25,0:25:60:.:.:0,60,900 0/0:20,0:20:60:.:.:0,60,640 0/0:19,0:19:42:.:.:0,42,630 0/0:32,0:32:84:.:.:0,84,1126 0/0:17,0:17:39:.:.:0,39,585 0/0:52,0:52:99:.:.:0,99,1485 0/1:24,2:26:12:0|1:26736906_TGCA_T:12,0,2391 0/0:12,0:12:30:.:.:0,30,450 0/0:45,0:45:99:.:.:0,99,1485 0/0:20,0:20:51:.:.:0,51,765 0/0:31,0:31:60:.:.:0,60,900 0/0:21,0:21:48:.:.:0,48,720 0/0:2,0:2:0:.:.:0,0,24 0/0:59,0:59:99:.:.:0,102,1530 0/0:27,0:27:60:.:.:0,60,900 0/0:19,0:19:45:.:.:0,45,634 0/0:10,0:10:19:.:.:0,19,293 0/0:9,0:9:16:.:.:0,16,268 0/0:18,0:18:45:.:.:0,45,675 0/0:34,0:34:81:.:.:0,81,1215 0/0:6,0:6:15:.:.:0,15,225 0/0:2,0:2:6:.:.:0,6,68 0/0:12,0:12:24:.:.:0,24,360 0/0:22,0:22:55:.:.:0,55,667 0/0:21,0:21:60:.:.:0,60,747 0/0:15,0:15:30:.:.:0,30,450 0/0:19,0:19:51:.:.:0,51,765 0/0:16,0:16:39:.:.:0,39,585 1 26736911 . TCAC T 49.72 . AC=1;AF=5.051e-03;AN=198;BaseQRankSum=1.37;ClippingRankSum=0.217;DP=2149;FS=0.000;InbreedingCoeff=-0.0617;MLEAC=1;MLEAF=5.051e-03;MQ=54.87;MQRankSum=-2.292e+00;QD=3.31;ReadPosRankSum=-2.358e+00;SOR=0.776 GT:AD:DP:GQ:PGT:PID:PL 0/0:20,0:20:60:.:.:0,60,690 0/0:28,0:28:75:.:.:0,75,1125 0/0:29,0:29:0:.:.:0,0,659 0/0:20,0:20:48:.:.:0,48,720 0/0:13,0:13:36:.:.:0,36,540 0/0:38,0:38:99:.:.:0,99,1485 0/0:20,0:20:51:.:.:0,51,765 0/0:18,0:18:51:.:.:0,51,765 0/0:24,0:24:0:.:.:0,0,565 0/0:17,0:17:51:.:.:0,51,544 0/0:17,0:17:14:.:.:0,14,425 0/0:9,0:9:0:.:.:0,0,213 0/0:4,0:4:12:.:.:0,12,135 0/0:22,0:22:51:.:.:0,51,765 0/0:11,0:11:33:.:.:0,33,369 0/0:19,0:19:42:.:.:0,42,583 0/0:21,0:21:37:.:.:0,37,683 0/0:24,0:24:0:.:.:0,0,589 0/0:36,0:36:37:.:.:0,37,1028 0/0:22,0:22:54:.:.:0,54,810 0/0:17,0:17:51:.:.:0,51,656 0/0:24,0:24:0:.:.:0,0,566 0/0:21,0:21:24:.:.:0,24,647 0/0:43,0:43:23:.:.:0,23,1241 0/0:16,0:16:13:.:.:0,13,473 0/0:72,0:72:34:.:.:0,34,1832 0/0:15,0:15:39:.:.:0,39,585 0/0:17,0:17:40:.:.:0,40,531 0/0:8,0:8:0:.:.:0,0,121 0/0:18,0:18:42:.:.:0,42,552 0/0:18,0:18:0:.:.:0,0,402 0/0:16,0:16:39:.:.:0,39,585 0/0:13,0:13:39:.:.:0,39,443 0/0:11,0:11:22:.:.:0,22,305 0/0:26,0:26:14:.:.:0,14,768 0/0:36,0:36:90:.:.:0,90,1350 0/0:15,0:15:42:.:.:0,42,630 0/0:35,0:35:31:.:.:0,31,1084 0/0:18,0:18:48:.:.:0,48,720 0/0:14,0:14:39:.:.:0,39,585 0/0:7,0:7:21:.:.:0,21,237 0/0:16,0:16:14:.:.:0,14,488 0/0:20,0:20:0:.:.:0,0,519 0/0:9,0:9:15:.:.:0,15,225 0/1:12,3:15:90:0|1:26736906_TGCA_T:90,0,1099 0/0:30,0:30:87:.:.:0,87,1305 0/0:21,0:21:60:.:.:0,60,738 0/0:33,0:33:68:.:.:0,68,1046 0/0:15,0:15:36:.:.:0,36,540 0/0:16,0:16:9:.:.:0,9,450 0/0:17,0:17:42:.:.:0,42,630 0/0:19,0:19:25:.:.:0,25,580 0/0:17,0:17:51:.:.:0,51,607 0/0:24,0:24:0:.:.:0,0,682 0/0:26,0:26:72:.:.:0,72,1080 ./.:0,0:0 0/0:35,0:35:91:.:.:0,91,1095 0/0:46,0:46:66:.:.:0,66,1378 0/0:13,0:13:33:.:.:0,33,495 0/0:12,0:12:27:.:.:0,27,405 0/0:35,0:35:87:.:.:0,87,1305 0/0:19,0:19:0:.:.:0,0,447 0/0:20,0:20:0:.:.:0,0,522 0/0:7,0:7:0:.:.:0,0,173 0/0:13,0:13:0:.:.:0,0,218 0/0:24,0:24:0:.:.:0,0,538 0/0:21,0:21:54:.:.:0,54,810 0/0:17,0:17:51:.:.:0,51,581 0/0:13,0:13:36:.:.:0,36,540 0/0:6,0:6:15:.:.:0,15,225 0/0:27,0:27:60:.:.:0,60,900 0/0:21,0:21:54:.:.:0,54,810 0/0:24,0:24:0:.:.:0,0,709 0/0:28,0:28:81:.:.:0,81,1215 0/0:23,0:23:51:.:.:0,51,765 0/0:33,0:33:84:.:.:0,84,1260 0/0:16,0:16:0:.:.:0,0,449 0/0:64,0:64:99:.:.:0,110,1800 0/0:29,2:31:3:0|1:26736906_TGCA_T:0,3,2695 0/0:15,0:15:42:.:.:0,42,630 0/0:45,0:45:99:.:.:0,99,1485 0/0:21,0:21:23:.:.:0,23,637 0/0:32,0:32:0:.:.:0,0,767 0/0:21,0:21:60:.:.:0,60,721 0/0:3,0:3:9:.:.:0,9,89 0/0:48,0:48:99:.:.:0,99,1485 0/0:35,0:35:78:.:.:0,78,1112 0/0:20,0:20:0:.:.:0,0,461 0/0:10,0:10:19:.:.:0,19,289 0/0:9,0:9:27:.:.:0,27,277 0/0:18,0:18:48:.:.:0,48,720 0/0:44,0:44:94:.:.:0,94,1445 0/0:9,0:9:24:.:.:0,24,360 0/0:3,0:3:9:.:.:0,9,95 0/0:10,0:10:0:.:.:0,0,224 0/0:28,0:28:30:.:.:0,30,781 0/0:21,0:21:60:.:.:0,60,747 0/0:16,0:16:42:.:.:0,42,630 0/0:22,0:22:63:.:.:0,63,945 0/0:20,0:20:49:.:.:0,49,571 1 26737049 . G A 260.81 . AC=1;AF=5.000e-03;AN=200;BaseQRankSum=-2.493e+00;ClippingRankSum=0.769;DP=2716;FS=1.935;InbreedingCoeff=-0.0090;MLEAC=1;MLEAF=5.000e-03;MQ=57.32;MQRankSum=0.523;QD=11.34;ReadPosRankSum=0.892;SOR=0.320 GT:AD:DP:GQ:PL 0/0:23,0:23:51:0,51,765 0/0:38,0:38:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:30,0:30:81:0,81,1215 0/0:32,0:32:72:0,72,1080 0/0:38,0:38:99:0,99,1485 0/0:26,0:26:60:0,60,900 0/0:19,0:19:51:0,51,765 0/0:24,0:24:60:0,60,900 0/0:19,0:19:45:0,45,675 0/0:24,0:24:54:0,54,810 0/0:21,0:21:54:0,54,810 0/0:2,0:2:6:0,6,60 0/0:29,0:29:81:0,81,1215 0/0:19,0:19:48:0,48,720 0/0:21,0:21:57:0,57,855 0/0:33,0:33:75:0,75,1125 0/0:17,0:17:33:0,33,495 0/0:34,0:34:84:0,84,1260 0/0:29,0:29:72:0,72,1080 0/0:27,0:27:72:0,72,1080 0/0:31,0:31:78:0,78,1144 0/0:33,0:33:60:0,60,900 0/0:46,0:46:99:0,105,1575 0/1:12,11:23:99:303,0,380 0/0:49,0:49:99:0,103,1620 0/0:23,0:23:54:0,54,810 0/0:33,0:33:54:0,54,810 0/0:19,0:19:46:0,46,685 0/0:23,0:23:51:0,51,765 0/0:16,0:16:36:0,36,540 0/0:19,0:19:36:0,36,540 0/0:24,0:24:63:0,63,945 0/0:24,0:24:48:0,48,720 0/0:34,0:34:78:0,78,1170 0/0:45,0:45:99:0,99,1485 0/0:18,0:18:48:0,48,720 0/0:34,0:34:81:0,81,1215 0/0:22,0:22:45:0,45,675 0/0:19,0:19:45:0,45,675 0/0:13,0:13:27:0,27,405 0/0:15,0:15:42:0,42,630 0/0:26,0:26:57:0,57,855 0/0:17,0:17:39:0,39,585 0/0:15,0:15:36:0,36,540 0/0:34,0:34:75:0,75,1125 0/0:22,0:22:45:0,45,675 0/0:41,0:41:99:0,99,1439 0/0:23,0:23:45:0,45,675 0/0:22,0:22:60:0,60,900 0/0:27,0:27:54:0,54,810 0/0:21,0:21:48:0,48,720 0/0:23,0:23:51:0,51,765 0/0:21,0:21:54:0,54,810 0/0:39,0:39:99:0,99,1368 0/0:2,0:2:3:0,3,45 0/0:36,0:36:99:0,99,1472 0/0:45,0:45:99:0,99,1379 0/0:18,0:18:45:0,45,675 0/0:12,0:12:33:0,33,495 0/0:41,0:41:99:0,99,1485 0/0:33,0:33:90:0,90,1350 0/0:17,0:17:36:0,36,540 0/0:21,0:21:60:0,60,900 0/0:25,0:25:60:0,60,900 0/0:28,0:28:63:0,63,945 0/0:26,0:26:60:0,60,900 0/0:26,0:26:54:0,54,810 0/0:15,0:15:39:0,39,585 0/0:12,0:12:24:0,24,360 0/0:37,0:37:81:0,81,1215 0/0:24,0:24:60:0,60,900 0/0:41,0:41:99:0,102,1530 0/0:46,0:46:96:0,96,1440 0/0:29,0:29:69:0,69,1035 0/0:42,0:42:99:0,99,1485 0/0:17,0:17:39:0,39,585 0/0:56,0:56:99:0,120,1800 0/0:35,0:35:72:0,72,1080 0/0:15,0:15:24:0,24,360 0/0:45,0:45:99:0,99,1485 0/0:26,0:26:72:0,72,1080 0/0:41,0:41:81:0,81,1215 0/0:41,0:41:99:0,99,1485 0/0:6,0:6:15:0,15,225 0/0:48,0:48:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:30,0:30:72:0,72,1071 0/0:17,0:17:33:0,33,495 0/0:18,0:18:51:0,51,765 0/0:24,0:24:48:0,48,720 0/0:44,0:44:99:0,105,1575 0/0:19,0:19:48:0,48,720 0/0:2,0:2:6:0,6,61 0/0:35,0:35:96:0,96,1440 0/0:37,0:37:90:0,90,1350 0/0:26,0:26:60:0,60,900 0/0:24,0:24:51:0,51,765 0/0:25,0:25:43:0,43,859 0/0:30,0:30:54:0,54,810 1 26737143 rs3811464 G A 31584.68 . AC=97;AF=0.485;AN=200;BaseQRankSum=-1.031e+00;ClippingRankSum=0.212;DB;DP=1985;FS=0.579;InbreedingCoeff=0.1135;MLEAC=104;MLEAF=0.520;MQ=58.45;MQRankSum=0.00;QD=22.15;ReadPosRankSum=-1.840e-01;SOR=0.642 GT:AD:DP:GQ:PL 0/1:6,10:16:99:304,0,169 0/0:25,0:25:60:0,60,900 1/1:1,26:27:43:851,43,0 0/1:9,18:27:99:527,0,269 0/0:15,0:15:0:0,0,287 0/0:22,0:22:60:0,60,900 1/1:0,12:12:36:409,36,0 1/1:0,15:15:45:546,45,0 0/1:5,12:17:99:386,0,117 0/1:1,9:10:10:287,0,10 0/0:20,0:20:45:0,45,675 1/1:0,11:11:33:402,33,0 1/1:0,7:7:21:241,21,0 0/1:9,11:20:99:334,0,260 0/0:13,0:13:27:0,27,405 0/1:9,12:21:99:377,0,265 1/1:0,11:11:33:369,33,0 1/1:1,17:18:19:554,19,0 1/1:0,27:27:81:939,81,0 0/1:13,5:18:99:113,0,367 0/0:19,0:19:42:0,42,630 1/1:1,34:35:82:1145,82,0 0/1:7,9:16:99:252,0,218 0/1:21,23:44:99:696,0,655 0/0:17,0:17:0:0,0,204 0/1:21,28:49:99:720,0,562 0/0:13,0:13:36:0,36,540 1/1:0,16:16:48:584,48,0 0/1:8,10:18:99:295,0,228 1/1:0,11:11:33:391,33,0 0/1:4,7:11:99:213,0,119 0/0:11,0:11:30:0,30,450 0/1:4,10:14:99:310,0,100 0/1:6,5:11:99:138,0,182 1/1:0,20:20:60:711,60,0 0/1:14,12:26:99:357,0,439 0/1:5,11:16:99:343,0,137 0/1:9,11:20:99:344,0,267 1/1:0,16:16:48:570,48,0 0/1:9,4:13:99:108,0,295 0/1:7,7:14:99:206,0,220 1/1:0,10:10:30:353,30,0 0/1:7,5:12:99:135,0,209 0/0:5,0:5:0:0,0,34 1/1:0,4:4:12:141,12,0 0/0:33,0:33:63:0,63,945 0/1:8,21:29:99:655,0,222 1/1:1,28:29:47:918,47,0 0/0:17,0:17:36:0,36,540 1/1:0,14:14:42:497,42,0 0/0:20,0:20:48:0,48,720 0/0:15,0:15:0:0,0,322 0/0:21,0:21:54:0,54,810 0/1:10,10:20:99:266,0,329 0/0:16,0:16:48:0,48,605 0/0:2,0:2:6:0,6,57 0/1:20,20:40:99:595,0,567 0/0:36,0:36:84:0,84,1260 0/1:5,10:15:99:291,0,136 0/1:11,4:15:99:106,0,366 0/1:17,13:30:99:391,0,537 1/1:0,14:14:42:518,42,0 0/0:17,0:17:0:0,0,241 1/1:0,7:7:21:257,21,0 1/1:0,19:19:56:596,56,0 0/1:12,13:25:99:350,0,363 0/1:8,11:19:99:343,0,246 1/1:0,25:25:75:900,75,0 0/0:11,0:11:0:0,0,140 0/1:6,8:14:99:216,0,185 0/0:17,0:17:45:0,45,675 1/1:0,15:15:45:501,45,0 0/1:16,14:30:99:399,0,525 0/1:8,11:19:99:323,0,237 0/0:32,0:32:63:0,63,945 0/1:15,6:21:99:140,0,492 1/1:0,14:14:42:521,42,0 0/1:25,35:60:99:1042,0,738 1/1:1,33:34:61:1108,61,0 0/0:16,0:16:0:0,0,144 0/1:18,15:33:99:423,0,581 1/1:1,16:17:10:554,10,0 0/1:5,7:12:99:189,0,136 0/1:7,5:12:99:150,0,220 0/0:9,0:9:24:0,24,360 0/1:26,34:60:99:1023,0,751 0/0:22,0:22:27:0,27,757 1/1:0,24:24:72:853,72,0 0/0:12,0:12:0:0,0,6 0/0:10,0:10:27:0,27,405 1/1:0,18:18:53:582,53,0 1/1:0,38:38:99:1345,114,0 0/0:6,0:6:12:0,12,180 0/0:2,0:2:0:0,0,16 1/1:0,25:25:75:873,75,0 0/1:21,10:31:99:250,0,660 0/0:13,0:13:33:0,33,495 0/1:8,7:15:99:200,0,242 0/0:17,0:17:39:0,39,585 0/0:13,0:13:0:0,0,159 1 26737645 rs113994472 G A 311.70 . AC=2;AF=0.011;AN=190;BaseQRankSum=0.421;ClippingRankSum=0.299;DB;DP=724;FS=3.834;InbreedingCoeff=-0.0507;MLEAC=2;MLEAF=0.011;MQ=60.00;MQRankSum=1.52;QD=13.55;ReadPosRankSum=0.663;SOR=1.380 GT:AD:DP:GQ:PL 0/0:5,0:5:15:0,15,169 0/0:8,0:8:18:0,18,270 0/0:14,0:14:33:0,33,495 0/0:6,0:6:12:0,12,180 0/0:15,0:15:39:0,39,585 0/0:8,0:8:24:0,24,306 0/0:5,0:5:0:0,0,39 0/0:7,0:7:15:0,15,225 0/0:8,0:8:21:0,21,315 0/0:5,0:5:12:0,12,180 0/0:8,0:8:15:0,15,225 0/0:6,0:6:18:0,18,206 ./.:4,0:4 0/0:11,0:11:21:0,21,315 0/0:1,0:1:3:0,3,32 0/0:7,0:7:18:0,18,270 0/0:6,0:6:12:0,12,180 0/0:5,0:5:15:0,15,188 0/1:7,7:14:99:223,0,191 0/0:8,0:8:18:0,18,270 0/0:5,0:5:15:0,15,180 0/0:7,0:7:21:0,21,245 0/0:4,0:4:6:0,6,90 0/0:18,0:18:42:0,42,630 0/0:8,0:8:24:0,24,271 0/0:12,0:12:36:0,36,374 0/0:8,0:8:21:0,21,315 ./.:4,0:4 0/0:1,0:1:3:0,3,29 0/0:5,0:5:15:0,15,171 0/0:4,0:4:3:0,3,45 0/0:6,0:6:18:0,18,226 0/0:2,0:2:6:0,6,82 0/0:4,0:4:12:0,12,141 0/0:4,0:4:12:0,12,150 0/0:10,0:10:27:0,27,405 0/0:6,0:6:15:0,15,225 0/0:7,0:7:18:0,18,270 0/1:4,5:9:99:146,0,129 0/0:3,0:3:9:0,9,105 0/0:5,0:5:15:0,15,168 0/0:4,0:4:3:0,3,45 0/0:9,0:9:18:0,18,270 0/0:3,0:3:9:0,9,105 0/0:7,0:7:18:0,18,270 0/0:9,0:9:27:0,27,321 0/0:7,0:7:18:0,18,270 0/0:8,0:8:18:0,18,270 0/0:7,0:7:21:0,21,242 ./.:0,0:0 0/0:4,0:4:9:0,9,135 0/0:5,0:5:12:0,12,180 0/0:9,0:9:21:0,21,315 0/0:10,0:10:24:0,24,360 0/0:2,0:2:6:0,6,74 0/0:4,0:4:12:0,12,124 0/0:16,0:16:42:0,42,630 0/0:11,0:11:30:0,30,450 ./.:7,0:7 0/0:6,0:6:0:0,0,159 0/0:14,0:14:3:0,3,423 0/0:6,0:6:18:0,18,204 0/0:7,0:7:21:0,21,248 0/0:3,0:3:9:0,9,112 0/0:6,0:6:18:0,18,211 0/0:6,0:6:15:0,15,225 0/0:6,0:6:18:0,18,218 0/0:3,0:3:9:0,9,100 0/0:5,0:5:15:0,15,187 0/0:5,0:5:15:0,15,179 0/0:10,0:10:27:0,27,405 0/0:8,0:8:24:0,24,289 0/0:6,0:6:15:0,15,225 0/0:15,0:15:42:0,42,630 0/0:15,0:15:17:0,17,506 0/0:8,0:8:0:0,0,211 0/0:4,0:4:6:0,6,90 0/0:24,0:24:60:0,60,804 ./.:7,0:7 0/0:2,0:2:6:0,6,75 0/0:15,0:15:33:0,33,495 0/0:6,0:6:18:0,18,205 0/0:8,0:8:24:0,24,295 0/0:5,0:5:9:0,9,135 0/0:2,0:2:6:0,6,72 0/0:21,0:21:54:0,54,810 0/0:16,0:16:42:0,42,630 0/0:9,0:9:24:0,24,360 0/0:4,0:4:12:0,12,117 0/0:1,0:1:3:0,3,29 0/0:9,0:9:15:0,15,225 0/0:14,0:14:27:0,27,405 0/0:2,0:2:6:0,6,74 0/0:5,0:5:15:0,15,172 0/0:5,0:5:12:0,12,180 0/0:10,0:10:21:0,21,315 0/0:8,0:8:21:0,21,315 0/0:4,0:4:12:0,12,150 0/0:6,0:6:9:0,9,135 0/0:2,0:2:6:0,6,58 1 26738259 rs79830033 C T 840.44 . AC=7;AF=0.035;AN=198;BaseQRankSum=0.00;ClippingRankSum=0.00;DB;DP=889;FS=0.000;InbreedingCoeff=0.1051;MLEAC=7;MLEAF=0.035;MQ=60.00;MQRankSum=0.876;QD=13.34;ReadPosRankSum=0.244;SOR=0.933 GT:AD:DP:GQ:PL 0/0:6,0:6:12:0,12,180 0/0:6,0:6:15:0,15,225 0/0:15,0:15:15:0,15,443 0/0:12,0:12:30:0,30,450 0/0:4,0:4:12:0,12,138 0/0:11,0:11:24:0,24,360 0/1:4,5:9:88:138,0,88 0/0:9,0:9:18:0,18,270 0/0:5,0:5:15:0,15,158 0/0:4,0:4:12:0,12,108 0/0:8,0:8:15:0,15,225 0/0:10,0:10:30:0,30,321 0/0:3,0:3:9:0,9,100 0/0:5,0:5:15:0,15,159 0/0:8,0:8:12:0,12,180 0/0:8,0:8:24:0,24,288 0/0:6,0:6:15:0,15,225 0/0:6,0:6:12:0,12,180 0/1:4,8:12:97:198,0,97 0/0:15,0:15:24:0,24,360 0/0:16,0:16:33:0,33,495 0/0:17,0:17:30:0,30,581 0/0:9,0:9:21:0,21,315 0/0:17,0:17:36:0,36,540 0/0:9,0:9:18:0,18,270 0/0:9,0:9:12:0,12,180 0/0:4,0:4:9:0,9,135 0/1:7,5:12:99:135,0,200 0/0:7,0:7:21:0,21,246 0/0:5,0:5:12:0,12,180 0/0:3,0:3:6:0,6,90 0/0:6,0:6:18:0,18,185 0/0:5,0:5:9:0,9,135 0/0:5,0:5:15:0,15,163 0/0:6,0:6:18:0,18,193 0/0:11,0:11:21:0,21,315 0/0:8,0:8:18:0,18,270 0/0:9,0:9:24:0,24,360 1/1:0,7:7:21:247,21,0 0/0:4,0:4:12:0,12,123 0/0:2,0:2:6:0,6,63 0/0:6,0:6:15:0,15,225 0/0:9,0:9:24:0,24,360 0/0:3,0:3:9:0,9,105 0/0:12,0:12:33:0,33,495 0/0:16,0:16:36:0,36,540 0/0:6,0:6:15:0,15,225 0/0:10,0:10:27:0,27,405 0/0:9,0:9:18:0,18,270 0/0:3,0:3:6:0,6,90 0/0:1,0:1:3:0,3,28 0/0:8,0:8:18:0,18,270 0/0:9,0:9:27:0,27,312 0/0:14,0:14:33:0,33,495 0/0:4,0:4:12:0,12,136 0/0:4,0:4:12:0,12,121 0/0:13,0:13:27:0,27,405 0/0:23,0:23:60:0,60,900 0/1:2,4:6:58:93,0,58 0/0:4,0:4:9:0,9,135 0/0:13,0:13:27:0,27,405 0/0:12,0:12:21:0,21,315 0/0:9,0:9:21:0,21,315 0/0:4,0:4:9:0,9,135 0/0:3,0:3:6:0,6,90 0/0:14,0:14:27:0,27,405 0/0:10,0:10:27:0,27,405 0/0:3,0:3:6:0,6,90 0/0:5,0:5:6:0,6,90 0/0:2,0:2:6:0,6,60 0/0:7,0:7:18:0,18,270 0/0:5,0:5:12:0,12,180 0/0:13,0:13:33:0,33,495 0/0:11,0:11:24:0,24,360 0/0:12,0:12:27:0,27,405 0/0:18,0:18:15:0,15,553 0/0:5,0:5:12:0,12,180 0/0:42,0:42:99:0,99,1485 0/1:11,6:17:99:156,0,322 0/0:4,0:4:12:0,12,127 0/0:17,0:17:39:0,39,585 0/0:16,0:16:30:0,30,450 0/0:12,0:12:30:0,30,450 0/0:7,0:7:21:0,21,232 0/0:3,0:3:9:0,9,102 0/0:32,0:32:72:0,72,1080 0/0:12,0:12:30:0,30,450 0/0:9,0:9:27:0,27,304 0/0:4,0:4:9:0,9,135 0/0:2,0:2:6:0,6,63 0/0:8,0:8:18:0,18,270 0/0:19,0:19:42:0,42,630 0/0:2,0:2:3:0,3,45 ./.:0,0:0 0/0:7,0:7:15:0,15,225 0/0:18,0:18:33:0,33,495 0/0:4,0:4:9:0,9,135 0/0:4,0:4:3:0,3,45 0/0:7,0:7:12:0,12,180 0/0:3,0:3:3:0,3,45 1 26751855 . T G 324.85 . AC=1;AF=5.051e-03;AN=198;BaseQRankSum=2.12;ClippingRankSum=-1.676e+00;DP=3320;FS=0.000;InbreedingCoeff=-0.0059;MLEAC=1;MLEAF=5.051e-03;MQ=38.92;MQRankSum=-3.130e-01;QD=9.84;ReadPosRankSum=-1.050e+00;SOR=0.627 GT:AD:DP:GQ:PL 0/0:38,0:38:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:39,0:39:81:0,81,1305 0/0:37,0:37:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:38,0:38:99:0,99,1357 0/0:27,0:27:57:0,57,855 0/0:44,0:44:99:0,99,1485 0/0:47,0:47:99:0,108,1620 0/0:20,0:20:51:0,51,765 0/0:18,0:18:48:0,48,720 0/0:1,0:1:3:0,3,27 0/0:31,0:31:81:0,81,1215 0/1:20,13:33:99:367,0,620 0/0:23,0:23:57:0,57,855 0/0:38,0:38:99:0,99,1485 0/0:43,0:43:88:0,88,1446 0/0:36,0:36:99:0,99,1485 0/0:20,0:20:42:0,42,630 0/0:37,0:37:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:29,0:29:60:0,60,900 0/0:38,0:38:99:0,99,1314 0/0:25,0:25:57:0,57,855 0/0:47,0:47:99:0,105,1575 0/0:27,0:27:72:0,72,1080 0/0:29,0:29:63:0,63,945 0/0:31,0:31:79:0,79,1103 0/0:25,0:25:63:0,63,945 0/0:22,0:22:51:0,51,765 0/0:25,0:25:54:0,54,810 0/0:24,0:24:63:0,63,945 0/0:14,0:14:39:0,39,585 0/0:42,0:42:99:0,102,1530 0/0:40,0:40:99:0,99,1485 0/0:35,0:35:99:0,102,1530 0/0:38,0:38:99:0,99,1485 0/0:40,0:40:99:0,108,1620 0/0:32,0:32:90:0,90,1350 0/0:22,0:22:54:0,54,810 0/0:29,0:29:66:0,66,990 0/0:30,0:30:72:0,72,1080 0/0:21,0:21:60:0,60,900 0/0:35,0:35:81:0,81,1215 0/0:41,0:41:99:0,99,1485 0/0:48,0:48:99:0,105,1575 0/0:40,0:40:99:0,102,1519 0/0:37,0:37:99:0,99,1485 0/0:21,0:21:48:0,48,720 0/0:39,0:39:99:0,99,1461 0/0:23,0:23:60:0,60,900 0/0:40,0:40:99:0,99,1485 0/0:28,0:28:72:0,72,1080 0/0:47,0:47:99:0,120,1800 0/0:1,0:1:3:0,3,29 0/0:42,0:42:99:0,99,1485 0/0:48,0:48:99:0,99,1485 0/0:26,0:26:72:0,72,1080 0/0:21,0:21:51:0,51,765 0/0:39,0:39:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:36,0:36:99:0,99,1485 0/0:24,0:24:60:0,60,900 0/0:37,0:37:99:0,99,1485 0/0:33,0:33:84:0,84,1260 0/0:27,0:27:72:0,72,1080 0/0:32,0:32:72:0,72,1147 0/0:30,0:30:78:0,78,1170 0/0:23,0:23:60:0,60,823 0/0:39,0:39:99:0,99,1485 0/0:32,0:32:81:0,81,1215 0/0:42,0:42:99:0,99,1485 0/0:44,0:44:99:0,100,1530 0/0:41,0:41:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:35,0:35:99:0,99,1381 0/0:40,0:40:99:0,102,1487 0/0:33,0:33:90:0,90,1350 0/0:38,0:38:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:42,0:42:99:0,102,1530 0/0:38,0:38:99:0,99,1379 0/0:10,0:10:30:0,30,361 0/0:40,0:40:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:43,0:43:99:0,102,1530 0/0:17,0:17:48:0,48,720 0/0:21,0:21:60:0,60,792 0/0:39,0:39:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:30,0:30:72:0,72,1080 ./.:0,0:0 0/0:39,0:39:99:0,99,1485 0/0:46,0:46:99:0,102,1530 0/0:36,0:36:90:0,90,1350 0/0:22,0:22:60:0,60,900 0/0:38,0:38:99:0,99,1485 0/0:40,0:40:99:0,102,1149 1 26751933 rs149686153 G A 296.79 . AC=1;AF=5.051e-03;AN=198;BaseQRankSum=1.83;ClippingRankSum=1.78;DB;DP=3605;FS=0.000;InbreedingCoeff=-0.0063;MLEAC=1;MLEAF=5.051e-03;MQ=58.31;MQRankSum=1.07;QD=11.87;ReadPosRankSum=0.520;SOR=0.859 GT:AD:DP:GQ:PL 0/0:40,0:40:93:0,93,1395 0/0:43,0:43:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:47,0:47:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:40,0:40:90:0,90,1350 0/0:40,0:40:99:0,99,1369 0/0:31,0:31:81:0,81,1215 0/0:47,0:47:99:0,108,1620 0/0:40,0:40:99:0,99,1485 0/0:33,0:33:72:0,72,1080 0/0:6,0:6:15:0,15,225 0/0:39,0:39:99:0,99,1485 0/0:36,0:36:87:0,87,1305 0/0:30,0:30:63:0,63,945 0/0:37,0:37:99:0,99,1413 0/0:47,0:47:99:0,99,1485 0/0:36,0:36:99:0,99,1485 0/0:22,0:22:35:0,35,669 0/0:45,0:45:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:37,0:37:84:0,84,1260 0/0:38,0:38:99:0,99,1314 0/0:33,0:33:78:0,78,1170 0/0:47,0:47:99:0,105,1575 0/0:42,0:42:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:32,0:32:72:0,72,1080 0/0:24,0:24:63:0,63,945 0/0:34,0:34:72:0,72,1080 0/0:25,0:25:66:0,66,990 0/0:32,0:32:75:0,75,1125 0/0:42,0:42:99:0,102,1530 0/0:40,0:40:99:0,99,1485 0/0:32,0:32:81:0,81,1215 0/0:40,0:40:99:0,105,1575 0/0:42,0:42:99:0,99,1485 0/0:29,0:29:81:0,81,1215 0/0:25,0:25:51:0,51,765 0/0:24,0:24:63:0,63,945 0/0:38,0:38:90:0,90,1350 0/0:26,0:26:60:0,60,900 0/0:33,0:33:81:0,81,1215 0/0:41,0:41:99:0,99,1485 0/0:48,0:48:99:0,105,1575 0/0:40,0:40:99:0,102,1519 0/0:40,0:40:99:0,102,1530 0/0:34,0:34:90:0,90,1350 0/0:43,0:43:99:0,102,1530 0/0:26,0:26:72:0,72,1080 0/0:40,0:40:99:0,99,1485 0/0:32,0:32:72:0,72,1080 0/0:42,0:42:99:0,99,1485 0/0:2,0:2:6:0,6,74 0/0:42,0:42:99:0,99,1485 0/0:48,0:48:99:0,99,1485 0/0:33,0:33:69:0,69,1035 0/0:32,0:32:71:0,71,1132 0/0:39,0:39:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:36,0:36:72:0,72,1080 0/0:28,0:28:72:0,72,1080 0/0:37,0:37:99:0,99,1354 0/0:34,0:34:78:0,78,1170 0/1:14,11:25:99:339,0,426 0/0:41,0:41:99:0,99,1485 0/0:34,0:34:81:0,81,1215 0/0:23,0:23:60:0,60,900 0/0:40,0:40:99:0,102,1530 0/0:42,0:42:93:0,93,1395 0/0:42,0:42:99:0,99,1485 0/0:44,0:44:99:0,100,1530 0/0:41,0:41:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:35,0:35:99:0,99,1381 0/0:40,0:40:99:0,102,1487 0/0:42,0:42:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:39,0:39:99:0,102,1530 0/0:42,0:42:99:0,99,1485 0/0:16,0:16:42:0,42,630 0/0:40,0:40:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:43,0:43:99:0,102,1530 0/0:34,0:34:90:0,90,1350 0/0:31,0:31:81:0,81,1173 0/0:43,0:43:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:17,0:17:39:0,39,585 ./.:0,0:0 0/0:39,0:39:99:0,99,1485 0/0:46,0:46:99:0,102,1530 0/0:33,0:33:81:0,81,1215 0/0:33,0:33:81:0,81,1193 0/0:41,0:41:99:0,99,1485 0/0:33,0:33:99:0,99,989 1 26752129 rs35015532 A G 12507.21 . AC=55;AF=0.289;AN=190;BaseQRankSum=1.24;ClippingRankSum=0.365;DB;DP=1218;FS=0.000;InbreedingCoeff=0.0853;MLEAC=62;MLEAF=0.326;MQ=57.63;MQRankSum=0.00;QD=20.60;ReadPosRankSum=-2.410e-01;SOR=1.364 GT:AD:DP:GQ:PL 0/0:6,0:6:0:0,0,135 0/1:5,10:15:99:357,0,136 0/1:3,23:26:32:744,0,32 0/0:7,0:7:21:0,21,245 ./.:6,0:6 0/1:9,10:19:99:310,0,269 0/1:5,5:10:99:163,0,148 ./.:4,0:4 0/1:5,7:12:99:210,0,145 0/0:8,0:8:15:0,15,225 0/0:3,0:3:9:0,9,104 0/1:2,5:7:55:183,0,55 ./.:0,0:0 0/0:7,0:7:0:0,0,29 0/0:12,0:12:0:0,0,202 1/1:0,7:7:21:233,21,0 0/1:2,8:10:41:283,0,41 0/0:7,0:7:0:0,0,95 1/1:0,16:16:48:628,48,0 0/0:5,0:5:15:0,15,163 0/0:20,0:20:48:0,48,720 0/1:11,7:18:99:195,0,322 0/0:7,0:7:12:0,12,180 0/1:12,13:25:99:426,0,364 1/1:0,5:5:15:189,15,0 0/1:9,4:13:88:88,0,226 0/0:8,0:8:18:0,18,270 1/1:0,8:8:24:305,24,0 0/0:7,0:7:21:0,21,248 0/0:8,0:8:15:0,15,225 ./.:4,0:4 0/0:6,0:6:15:0,15,225 0/0:10,0:10:27:0,27,405 0/0:7,0:7:12:0,12,180 1/1:0,20:20:60:782,60,0 0/1:16,8:24:99:220,0,490 0/0:10,0:10:24:0,24,360 0/0:19,0:19:33:0,33,495 1/1:0,14:14:42:535,42,0 0/0:14,0:14:33:0,33,495 0/0:8,0:8:21:0,21,315 0/0:5,0:5:15:0,15,187 0/0:9,0:9:24:0,24,360 0/0:9,0:9:0:0,0,28 0/0:3,0:3:9:0,9,114 0/1:8,12:20:99:397,0,226 0/0:17,0:17:30:0,30,450 0/0:24,0:24:60:0,60,900 0/0:9,0:9:24:0,24,360 0/1:6,6:12:99:194,0,187 0/0:14,0:14:27:0,27,405 0/0:6,0:6:18:0,18,209 0/1:5,5:10:99:154,0,164 0/0:12,0:12:0:0,0,294 0/0:6,0:6:9:0,9,135 ./.:0,0:0 0/0:18,0:18:21:0,21,575 0/0:23,0:23:53:0,53,778 1/1:0,6:6:18:228,18,0 0/1:3,10:13:75:321,0,75 0/0:27,0:27:8:0,8,857 1/1:0,13:13:39:490,39,0 0/0:13,0:13:0:0,0,262 1/1:0,14:14:42:518,42,0 0/0:6,0:6:15:0,15,225 0/1:4,6:10:99:197,0,110 0/1:4,4:8:99:131,0,127 0/1:7,4:11:99:124,0,224 0/1:6,4:10:99:101,0,192 0/0:6,0:6:15:0,15,225 0/0:9,0:9:18:0,18,270 0/0:9,0:9:12:0,12,180 0/1:7,7:14:99:231,0,210 0/1:12,7:19:99:195,0,348 0/1:14,6:20:99:158,0,433 0/1:16,9:25:99:240,0,505 0/1:3,5:8:89:165,0,89 0/1:19,20:39:99:616,0,557 0/1:7,5:12:99:131,0,227 0/0:13,0:13:36:0,36,540 0/0:27,0:27:60:0,60,900 0/1:6,7:13:99:196,0,165 0/1:5,13:18:99:442,0,106 0/0:5,0:5:0:0,0,115 0/0:1,0:1:3:0,3,33 0/0:38,0:38:93:0,93,1395 0/0:27,0:27:0:0,0,822 1/1:0,13:13:39:456,39,0 0/1:2,7:9:45:234,0,45 0/0:14,0:14:3:0,3,430 1/1:0,11:11:33:442,33,0 0/0:27,0:27:60:0,60,900 0/0:9,0:9:0:0,0,140 0/0:1,0:1:3:0,3,28 1/1:0,11:11:33:414,33,0 0/0:18,0:18:51:0,51,765 0/1:3,4:7:91:139,0,91 0/1:8,4:12:99:117,0,264 0/0:5,0:5:15:0,15,191 0/0:2,0:2:6:0,6,60 1 26752620 . G A 163.07 . AC=1;AF=5.155e-03;AN=194;BaseQRankSum=-1.905e+00;ClippingRankSum=1.06;DP=1322;FS=0.000;InbreedingCoeff=-0.0144;MLEAC=1;MLEAF=5.155e-03;MQ=57.03;MQRankSum=0.529;QD=10.19;ReadPosRankSum=-1.588e+00;SOR=0.495 GT:AD:DP:GQ:PL 0/0:12,0:12:0:0,0,364 0/0:13,0:13:33:0,33,495 0/0:19,0:19:57:0,57,667 0/0:17,0:17:42:0,42,630 0/0:11,0:11:30:0,30,450 0/0:25,0:25:72:0,72,1080 0/0:9,0:9:24:0,24,360 0/0:11,0:11:30:0,30,450 0/0:7,0:7:18:0,18,270 0/0:5,0:5:15:0,15,157 0/0:11,0:11:27:0,27,405 0/0:6,0:6:18:0,18,206 0/0:2,0:2:6:0,6,72 0/0:13,0:13:36:0,36,540 0/0:8,0:8:21:0,21,315 0/0:15,0:15:39:0,39,585 0/0:9,0:9:27:0,27,340 0/0:12,0:12:36:0,36,443 0/0:17,0:17:51:0,51,604 0/0:3,0:3:9:0,9,104 0/0:18,0:18:42:0,42,630 0/1:9,7:16:99:205,0,284 0/0:7,0:7:21:0,21,252 0/0:18,0:18:48:0,48,720 0/0:4,0:4:12:0,12,138 0/0:15,0:15:39:0,39,585 0/0:15,0:15:39:0,39,585 0/0:10,0:10:24:0,24,360 0/0:14,0:14:36:0,36,540 0/0:4,0:4:9:0,9,135 0/0:9,0:9:21:0,21,315 0/0:10,0:10:30:0,30,369 0/0:12,0:12:33:0,33,495 0/0:5,0:5:15:0,15,183 0/0:15,0:15:45:0,45,552 0/0:24,0:24:66:0,66,990 0/0:12,0:12:33:0,33,495 0/0:11,0:11:30:0,30,450 0/0:15,0:15:36:0,36,540 0/0:15,0:15:45:0,45,521 0/0:8,0:8:18:0,18,270 0/0:5,0:5:15:0,15,159 0/0:15,0:15:45:0,45,564 0/0:8,0:8:12:0,12,180 0/0:6,0:6:18:0,18,225 0/0:26,0:26:75:0,75,1125 0/0:13,0:13:33:0,33,495 0/0:23,0:23:60:0,60,900 0/0:13,0:13:39:0,39,486 0/0:6,0:6:15:0,15,225 0/0:6,0:6:15:0,15,225 0/0:14,0:14:39:0,39,585 0/0:11,0:11:33:0,33,430 0/0:14,0:14:42:0,42,530 0/0:7,0:7:21:0,21,247 ./.:0,0:0 0/0:21,0:21:51:0,51,765 0/0:30,0:30:73:0,73,1015 0/0:7,0:7:18:0,18,270 0/0:8,0:8:18:0,18,270 0/0:18,0:18:15:0,15,547 0/0:16,0:16:42:0,42,630 0/0:12,0:12:27:0,27,405 0/0:16,0:16:36:0,36,540 0/0:7,0:7:21:0,21,247 0/0:6,0:6:15:0,15,225 0/0:14,0:14:33:0,33,495 0/0:12,0:12:33:0,33,495 0/0:13,0:13:33:0,33,495 0/0:9,0:9:24:0,24,360 0/0:8,0:8:21:0,21,315 0/0:13,0:13:36:0,36,540 0/0:10,0:10:24:0,24,360 0/0:21,0:21:54:0,54,810 0/0:20,0:20:60:0,60,746 0/0:27,0:27:75:0,75,1125 0/0:10,0:10:30:0,30,374 0/0:39,0:39:99:0,102,1530 0/0:26,0:26:63:0,63,907 0/0:23,0:23:60:0,60,900 0/0:26,0:26:63:0,63,945 0/0:14,0:14:19:0,19,441 0/0:12,0:12:27:0,27,405 0/0:9,0:9:27:0,27,328 0/0:3,0:3:6:0,6,90 0/0:43,0:43:17:0,17,1371 0/0:22,0:22:60:0,60,900 0/0:15,0:15:42:0,42,630 ./.:0,0:0 0/0:5,0:5:12:0,12,180 0/0:13,0:13:33:0,33,495 0/0:36,0:36:90:0,90,1350 0/0:7,0:7:21:0,21,268 ./.:0,0:0 0/0:15,0:15:42:0,42,630 0/0:25,0:25:51:0,51,765 0/0:9,0:9:27:0,27,325 0/0:8,0:8:24:0,24,309 0/0:19,0:19:51:0,51,765 0/0:6,0:6:18:0,18,198 1 26752934 rs201055562 G A 659.77 . AC=1;AF=5.000e-03;AN=200;BaseQRankSum=2.57;ClippingRankSum=0.552;DB;DP=3740;FS=0.000;InbreedingCoeff=-0.0077;MLEAC=1;MLEAF=5.000e-03;MQ=56.93;MQRankSum=2.15;QD=14.99;ReadPosRankSum=1.28;SOR=0.693 GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:38,0:38:99:0,102,1530 0/0:43,0:43:99:0,105,1575 0/0:39,0:39:99:0,99,1359 0/0:40,0:40:90:0,90,1350 0/0:39,0:39:99:0,99,1485 0/0:36,0:36:99:0,99,1485 0/0:45,0:45:99:0,102,1530 0/0:43,0:43:99:0,102,1530 0/0:37,0:37:99:0,99,1485 0/0:4,0:4:9:0,9,135 0/0:45,0:45:99:0,105,1575 0/0:41,0:41:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:46,0:46:99:0,102,1530 0/0:47,0:47:99:0,99,1485 0/0:36,0:36:99:0,99,1485 0/0:20,0:20:57:0,57,855 0/0:43,0:43:99:0,102,1530 0/0:39,0:39:99:0,99,1485 0/0:36,0:36:84:0,84,1260 0/0:38,0:38:99:0,99,1270 0/0:38,0:38:99:0,99,1485 0/0:41,0:41:99:0,102,1530 0/0:35,0:35:72:0,72,1080 0/0:41,0:41:99:0,102,1530 0/0:24,0:24:60:0,60,900 0/0:41,0:41:99:0,102,1530 0/0:35,0:35:84:0,84,1260 0/0:38,0:38:99:0,99,1485 0/0:36,0:36:99:0,99,1485 0/0:23,0:23:60:0,60,853 0/0:42,0:42:99:0,99,1485 0/0:39,0:39:99:0,108,1620 0/0:41,0:41:99:0,99,1485 0/0:41,0:41:99:0,102,1530 0/0:44,0:44:99:0,102,1530 0/0:39,0:39:99:0,99,1485 0/0:30,0:30:72:0,72,1080 0/0:33,0:33:81:0,81,1215 0/0:30,0:30:72:0,72,1080 0/0:23,0:23:18:0,18,739 0/1:22,22:44:99:702,0,653 0/0:38,0:38:99:0,99,1485 0/0:44,0:44:99:0,108,1620 0/0:47,0:47:99:0,108,1620 0/0:43,0:43:99:0,99,1485 0/0:28,0:28:72:0,72,1080 0/0:42,0:42:99:0,99,1485 0/0:37,0:37:90:0,90,1350 0/0:40,0:40:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:3,0:3:6:0,6,90 0/0:37,0:37:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:29,0:29:57:0,57,855 0/0:41,0:41:99:0,99,1485 0/0:41,0:41:99:0,102,1530 0/0:41,0:41:99:0,102,1530 0/0:45,0:45:99:0,102,1540 0/0:37,0:37:81:0,81,1215 0/0:43,0:43:99:0,99,1458 0/0:39,0:39:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:38,0:38:90:0,90,1350 0/0:31,0:31:69:0,69,1035 0/0:43,0:43:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:37,0:37:99:0,102,1530 0/0:35,0:35:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:39,0:39:99:0,102,1530 0/0:40,0:40:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:39,0:39:99:0,102,1530 0/0:39,0:39:99:0,99,1485 0/0:42,0:42:99:0,102,1530 0/0:43,0:43:99:0,99,1485 0/0:12,0:12:30:0,30,450 0/0:45,0:45:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:28,0:28:60:0,60,900 0/0:29,0:29:78:0,78,1170 0/0:41,0:41:99:0,99,1485 0/0:40,0:40:99:0,102,1530 0/0:32,0:32:72:0,72,1080 0/0:2,0:2:6:0,6,70 0/0:44,0:44:99:0,102,1530 0/0:37,0:37:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:42,0:42:99:0,102,1530 0/0:43,0:43:99:0,108,1620 0/0:45,0:45:99:0,99,1474 1 26752992 rs4659441 T C 135621.93 . AC=156;AF=0.780;AN=200;BaseQRankSum=-1.058e+00;ClippingRankSum=-2.410e-01;DB;DP=5426;FS=0.699;InbreedingCoeff=0.0297;MLEAC=158;MLEAF=0.790;MQ=50.23;MQRankSum=0.140;QD=26.05;ReadPosRankSum=0.063;SOR=0.849 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1901,162,0 1/1:0,68:68:99:2363,204,0 1/1:4,83:87:99:2623,111,0 0/1:37,31:68:99:862,0,1124 1/1:0,56:56:99:1929,168,0 1/1:1,87:88:99:2867,225,0 1/1:0,35:35:99:1183,105,0 0/1:19,16:35:99:429,0,598 0/1:22,24:46:99:704,0,654 1/1:1,60:61:99:1927,146,0 0/0:36,0:36:90:0,90,1350 1/1:0,35:35:99:1209,105,0 0/1:7,6:13:99:174,0,202 1/1:0,34:34:99:1195,102,0 0/1:26,24:50:99:662,0,795 1/1:0,43:43:99:1397,128,0 1/1:0,49:49:99:1715,147,0 0/1:5,37:42:51:1136,0,51 1/1:2,69:71:99:2175,138,0 1/1:0,15:15:45:494,45,0 0/1:35,32:67:99:923,0,1091 1/1:3,81:84:99:2580,144,0 1/1:0,30:30:90:1068,90,0 1/1:0,137:137:99:4631,409,0 1/1:0,37:37:99:1331,111,0 0/1:66,61:127:99:1592,0,1750 1/1:0,37:37:99:1284,111,0 1/1:0,32:32:96:1101,96,0 0/1:26,20:46:99:527,0,785 1/1:0,43:43:99:1539,129,0 0/1:16,13:29:99:391,0,514 1/1:0,35:35:99:1254,105,0 1/1:0,29:29:87:962,87,0 1/1:0,22:22:65:709,65,0 1/1:0,65:65:99:2205,194,0 1/1:0,98:98:99:3263,293,0 1/1:0,32:32:96:1128,96,0 1/1:1,46:47:99:1569,104,0 1/1:0,52:52:99:1808,156,0 1/1:0,43:43:99:1530,129,0 0/1:10,23:33:99:690,0,271 0/1:12,7:19:99:155,0,355 1/1:0,58:58:99:1942,174,0 1/1:0,29:29:87:980,87,0 1/1:0,38:38:99:1345,114,0 0/1:39,50:89:99:1371,0,1177 0/1:37,25:62:99:618,0,1121 1/1:2,92:94:99:2940,215,0 0/1:28,29:57:99:890,0,778 1/1:0,31:31:93:1125,93,0 1/1:0,34:34:99:1136,101,0 1/1:0,51:51:99:1803,153,0 1/1:0,32:32:96:1105,96,0 1/1:0,51:51:99:1823,153,0 0/0:43,0:43:99:0,99,1485 1/1:0,6:6:18:210,18,0 1/1:3,84:87:99:2758,153,0 0/1:74,63:137:99:1721,0,2231 1/1:0,21:21:63:706,63,0 0/1:22,21:43:99:597,0,679 0/0:41,0:41:99:0,102,1530 1/1:0,46:46:99:1530,137,0 0/1:24,34:58:99:925,0,657 1/1:1,44:45:99:1507,108,0 1/1:0,35:35:99:1258,105,0 0/1:19,22:41:99:633,0,579 1/1:0,42:42:99:1500,126,0 1/1:0,46:46:99:1562,138,0 0/1:18,20:38:99:555,0,475 0/1:17,19:36:99:543,0,494 0/1:32,25:57:99:699,0,975 1/1:0,46:46:99:1555,138,0 0/1:31,35:66:99:1026,0,876 1/1:5,65:70:22:1869,22,0 1/1:1,72:73:99:2312,182,0 0/1:40,48:88:99:1321,0,1170 1/1:0,52:52:99:1792,156,0 1/1:0,201:201:99:6620,600,0 0/1:46,43:89:99:1132,0,1376 0/1:20,9:29:99:247,0,669 0/1:36,45:81:99:1296,0,1082 0/1:27,35:62:99:1026,0,821 1/1:0,52:52:99:1829,156,0 0/1:17,20:37:99:603,0,472 0/0:11,0:11:0:0,0,178 0/1:89,81:170:99:2095,0,2604 0/1:45,41:86:99:1029,0,1433 1/1:1,67:68:99:2191,164,0 1/1:0,32:32:96:1098,96,0 1/1:1,30:31:83:1031,83,0 1/1:0,40:40:99:1375,120,0 1/1:1,93:94:99:3064,271,0 1/1:0,36:36:99:1176,107,0 0/0:1,0:1:3:0,3,29 1/1:0,57:57:99:1885,170,0 1/1:2,63:65:99:2014,118,0 0/1:17,15:32:99:390,0,558 1/1:1,31:32:85:1030,85,0 1/1:0,59:59:99:2005,176,0 0/0:48,0:48:60:0,60,1314 1 26753186 rs187722297 A T 1714.63 . AC=3;AF=0.015;AN=200;BaseQRankSum=-1.210e-01;ClippingRankSum=0.050;DB;DP=4944;FS=2.127;InbreedingCoeff=-0.0169;MLEAC=3;MLEAF=0.015;MQ=57.10;MQRankSum=1.53;QD=11.83;ReadPosRankSum=0.250;SOR=0.507 GT:AD:DP:GQ:PL 0/0:54,0:54:99:0,105,1575 0/0:58,0:58:99:0,120,1800 0/0:71,0:71:99:0,120,1800 0/0:47,0:47:99:0,99,1485 0/0:47,0:47:99:0,102,1530 0/0:74,0:74:99:0,120,1800 0/0:41,0:41:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:39,0:39:99:0,102,1530 0/0:41,0:41:96:0,96,1440 0/0:38,0:38:81:0,81,1215 0/0:3,0:3:6:0,6,90 0/0:34,0:34:81:0,81,1215 0/0:39,0:39:99:0,102,1530 0/1:36,26:62:99:593,0,1005 0/0:41,0:41:99:0,102,1530 0/0:39,0:39:99:0,102,1530 0/0:62,0:62:99:0,120,1800 0/0:23,0:23:66:0,66,990 0/0:52,0:52:99:0,117,1755 0/0:70,0:70:99:0,120,1800 0/0:37,0:37:99:0,99,1485 0/0:123,0:123:99:0,120,1800 0/1:25,24:49:99:694,0,721 0/0:47,0:47:99:0,99,1485 0/0:35,0:35:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:38,0:38:99:0,102,1530 0/0:36,0:36:84:0,84,1260 0/0:46,0:46:99:0,102,1530 0/0:48,0:48:99:0,107,1620 0/0:38,0:38:99:0,99,1485 0/0:61,0:61:99:0,120,1800 0/0:92,0:92:99:0,120,1800 0/0:45,0:45:99:0,102,1530 0/0:47,0:47:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:35,0:35:84:0,84,1260 0/0:36,0:36:66:0,66,990 0/0:40,0:40:99:0,102,1530 0/0:38,0:38:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:61,0:61:99:0,120,1800 0/0:45,0:45:99:0,105,1575 0/0:87,0:87:99:0,120,1800 0/0:45,0:45:99:0,99,1485 0/0:38,0:38:90:0,90,1350 0/0:44,0:44:99:0,102,1530 0/0:43,0:43:99:0,102,1518 0/0:40,0:40:99:0,99,1436 0/0:43,0:43:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:7,0:7:21:0,21,224 0/0:77,0:77:99:0,120,1800 0/0:85,0:85:99:0,120,1800 0/0:33,0:33:90:0,90,1350 0/0:42,0:42:99:0,102,1530 0/0:41,0:41:99:0,102,1530 0/0:46,0:46:99:0,99,1485 0/0:45,0:45:99:0,111,1665 0/1:16,18:34:99:502,0,466 0/0:35,0:35:99:0,99,1282 0/0:44,0:44:99:0,99,1485 0/0:47,0:47:99:0,102,1530 0/0:42,0:42:99:0,105,1575 0/0:42,0:42:99:0,99,1485 0/0:37,0:37:81:0,81,1215 0/0:45,0:45:99:0,102,1530 0/0:38,0:38:99:0,99,1485 0/0:53,0:53:99:0,111,1665 0/0:66,0:66:99:0,120,1800 0/0:61,0:61:99:0,120,1800 0/0:79,0:79:99:0,120,1800 0/0:46,0:46:99:0,105,1575 0/0:186,0:186:99:0,120,1800 0/0:57,0:57:99:0,120,1800 0/0:43,0:43:99:0,102,1530 0/0:70,0:70:99:0,120,1800 0/0:54,0:54:99:0,111,1665 0/0:46,0:46:99:0,99,1485 0/0:41,0:41:99:0,102,1530 0/0:15,0:15:36:0,36,540 0/0:149,0:149:99:0,120,1800 0/0:63,0:63:99:0,120,1800 0/0:51,0:51:99:0,102,1530 0/0:41,0:41:99:0,102,1530 0/0:39,0:39:84:0,84,1260 0/0:44,0:44:99:0,99,1485 0/0:89,0:89:99:0,120,1800 0/0:38,0:38:99:0,99,1485 0/0:3,0:3:9:0,9,99 0/0:43,0:43:99:0,99,1485 0/0:57,0:57:99:0,120,1800 0/0:41,0:41:99:0,99,1485 0/0:37,0:37:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:48,0:48:99:0,105,1710 1 26753687 rs139187644 T A 5557.76 . AC=1;AF=5.000e-03;AN=200;BaseQRankSum=-1.325e+00;ClippingRankSum=-4.060e-01;DB;DP=5363;FS=0.000;InbreedingCoeff=-0.0071;MLEAC=1;MLEAF=5.000e-03;MQ=57.44;MQRankSum=-1.320e-01;QD=14.25;ReadPosRankSum=-3.410e-01;SOR=0.680 GT:AD:DP:GQ:PL 0/0:54,0:54:99:0,105,1575 0/0:58,0:58:99:0,120,1800 0/0:71,0:71:99:0,120,1800 0/0:47,0:47:99:0,99,1485 0/0:47,0:47:99:0,102,1530 0/0:74,0:74:99:0,120,1800 0/0:40,0:40:99:0,99,1485 0/0:53,0:53:99:0,108,1620 0/0:41,0:41:99:0,99,1485 0/0:39,0:39:99:0,102,1530 0/0:41,0:41:99:0,102,1530 0/0:38,0:38:99:0,99,1485 0/0:3,0:3:6:0,6,90 0/0:40,0:40:99:0,99,1485 0/0:45,0:45:99:0,100,1575 0/0:53,0:53:99:0,120,1800 0/0:46,0:46:99:0,102,1530 0/0:39,0:39:99:0,102,1530 0/0:62,0:62:99:0,120,1800 0/0:25,0:25:57:0,57,855 0/0:52,0:52:99:0,117,1755 0/0:70,0:70:99:0,120,1800 0/0:47,0:47:99:0,99,1485 0/0:123,0:123:99:0,120,1800 0/0:39,0:39:99:0,99,1485 0/0:42,0:42:99:0,105,1575 0/0:42,0:42:99:0,101,1530 0/0:45,0:45:99:0,99,1485 0/0:54,0:54:96:0,96,1440 0/0:38,0:38:99:0,102,1530 0/0:46,0:46:99:0,105,1575 0/0:46,0:46:99:0,102,1530 0/0:48,0:48:99:0,107,1620 0/0:52,0:52:87:0,87,1305 0/0:61,0:61:99:0,120,1800 0/0:92,0:92:99:0,120,1800 0/0:48,0:48:99:0,107,1620 0/0:47,0:47:99:0,99,1485 0/0:50,0:50:99:0,114,1710 0/0:46,0:46:99:0,102,1530 0/0:43,0:43:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:43,0:43:99:0,102,1530 0/0:44,0:44:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:61,0:61:99:0,120,1800 0/0:45,0:45:99:0,105,1575 0/0:87,0:87:99:0,120,1800 0/0:45,0:45:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:44,0:44:99:0,102,1530 0/0:40,0:40:99:0,99,1485 0/0:40,0:40:99:0,99,1436 0/0:43,0:43:99:0,99,1485 0/0:45,0:45:99:0,105,1575 0/0:3,0:3:6:0,6,90 0/0:77,0:77:99:0,120,1800 0/0:85,0:85:99:0,120,1800 0/0:52,0:52:90:0,90,1350 0/0:45,0:45:99:0,99,1485 0/0:41,0:41:99:0,102,1530 0/0:46,0:46:99:0,99,1485 0/0:45,0:45:99:0,111,1665 0/0:46,0:46:99:0,102,1530 0/0:50,0:50:99:0,117,1755 0/0:44,0:44:99:0,99,1485 0/0:47,0:47:99:0,102,1530 0/0:45,0:45:99:0,100,1575 0/0:48,0:48:99:0,102,1530 0/0:43,0:43:99:0,99,1485 0/0:45,0:45:99:0,102,1530 0/0:38,0:38:99:0,99,1485 0/0:53,0:53:99:0,111,1665 0/0:66,0:66:99:0,120,1800 0/0:61,0:61:99:0,120,1800 0/0:79,0:79:99:0,120,1800 0/0:46,0:46:99:0,105,1575 0/1:197,193:390:99:5600,0,6043 0/0:57,0:57:99:0,120,1800 0/0:43,0:43:99:0,102,1530 0/0:70,0:70:99:0,120,1800 0/0:54,0:54:99:0,111,1665 0/0:46,0:46:99:0,99,1485 0/0:41,0:41:99:0,102,1530 0/0:30,0:30:78:0,78,1170 0/0:149,0:149:99:0,120,1800 0/0:63,0:63:99:0,120,1800 0/0:51,0:51:99:0,102,1530 0/0:43,0:43:99:0,99,1485 0/0:37,0:37:81:0,81,1215 0/0:44,0:44:99:0,99,1485 0/0:89,0:89:99:0,120,1800 0/0:42,0:42:99:0,99,1485 0/0:11,0:11:24:0,24,360 0/0:43,0:43:99:0,99,1485 0/0:57,0:57:99:0,120,1800 0/0:49,0:49:99:0,102,1530 0/0:46,0:46:99:0,102,1530 0/0:38,0:38:99:0,99,1485 0/0:60,0:60:99:0,120,1800 1 26753903 rs141455750 T C 2847.66 . AC=3;AF=0.015;AN=200;BaseQRankSum=0.128;ClippingRankSum=0.499;DB;DP=5271;FS=4.395;InbreedingCoeff=-0.0175;MLEAC=3;MLEAF=0.015;MQ=46.52;MQRankSum=0.417;QD=15.73;ReadPosRankSum=0.196;SOR=1.024 GT:AD:DP:GQ:PL 0/0:54,0:54:99:0,105,1575 0/0:58,0:58:99:0,120,1800 0/0:71,0:71:99:0,120,1800 0/0:47,0:47:99:0,99,1485 0/0:47,0:47:99:0,102,1530 0/0:74,0:74:99:0,120,1800 0/0:40,0:40:99:0,99,1485 0/0:53,0:53:99:0,108,1620 0/0:41,0:41:99:0,99,1485 0/0:39,0:39:99:0,102,1530 0/0:41,0:41:99:0,102,1530 0/0:38,0:38:99:0,99,1485 0/0:7,0:7:15:0,15,225 0/0:40,0:40:99:0,99,1485 0/0:45,0:45:99:0,100,1575 0/1:38,26:64:99:755,0,1164 0/0:46,0:46:99:0,102,1530 0/0:39,0:39:99:0,102,1530 0/0:62,0:62:99:0,120,1800 0/0:21,0:21:51:0,51,765 0/0:52,0:52:99:0,117,1755 0/0:70,0:70:99:0,120,1800 0/0:47,0:47:99:0,99,1485 0/0:123,0:123:99:0,120,1800 0/1:24,38:62:99:1204,0,669 0/0:42,0:42:99:0,105,1575 0/0:42,0:42:99:0,101,1530 0/0:45,0:45:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:38,0:38:99:0,102,1530 0/0:46,0:46:99:0,105,1575 0/0:46,0:46:99:0,102,1530 0/0:48,0:48:99:0,107,1620 0/0:39,0:39:99:0,99,1485 0/0:61,0:61:99:0,120,1800 0/0:92,0:92:99:0,120,1800 0/0:48,0:48:99:0,107,1620 0/0:47,0:47:99:0,99,1485 0/0:50,0:50:99:0,114,1710 0/0:46,0:46:99:0,102,1530 0/0:39,0:39:84:0,84,1260 0/0:40,0:40:99:0,99,1484 0/0:43,0:43:99:0,102,1530 0/0:42,0:42:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:61,0:61:99:0,120,1800 0/0:45,0:45:99:0,105,1575 0/0:87,0:87:99:0,120,1800 0/0:45,0:45:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:44,0:44:99:0,102,1530 0/0:40,0:40:99:0,99,1485 0/0:40,0:40:99:0,99,1436 0/0:43,0:43:99:0,99,1485 0/0:45,0:45:99:0,105,1575 0/0:2,0:2:6:0,6,61 0/0:77,0:77:99:0,120,1800 0/0:85,0:85:99:0,120,1800 0/0:43,0:43:99:0,99,1472 0/0:45,0:45:99:0,99,1485 0/0:41,0:41:99:0,102,1530 0/0:46,0:46:99:0,99,1485 0/0:45,0:45:99:0,111,1665 0/1:23,32:55:99:963,0,681 0/0:50,0:50:99:0,117,1755 0/0:44,0:44:99:0,99,1485 0/0:47,0:47:99:0,102,1530 0/0:45,0:45:99:0,100,1575 0/0:48,0:48:99:0,102,1530 0/0:41,0:41:99:0,100,1509 0/0:45,0:45:99:0,102,1530 0/0:38,0:38:99:0,99,1485 0/0:53,0:53:99:0,111,1665 0/0:66,0:66:99:0,120,1800 0/0:61,0:61:99:0,120,1800 0/0:79,0:79:99:0,120,1800 0/0:46,0:46:99:0,105,1575 0/0:312,0:312:99:0,120,1800 0/0:57,0:57:99:0,120,1800 0/0:43,0:43:99:0,102,1530 0/0:70,0:70:99:0,120,1800 0/0:54,0:54:99:0,111,1665 0/0:46,0:46:99:0,99,1485 0/0:41,0:41:99:0,102,1530 0/0:25,0:25:60:0,60,900 0/0:149,0:149:99:0,120,1800 0/0:63,0:63:99:0,120,1800 0/0:51,0:51:99:0,102,1530 0/0:45,0:45:99:0,102,1530 0/0:40,0:40:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:89,0:89:99:0,120,1800 0/0:42,0:42:99:0,99,1485 0/0:2,0:2:6:0,6,65 0/0:43,0:43:99:0,99,1485 0/0:57,0:57:99:0,120,1800 0/0:40,0:40:99:0,99,1485 0/0:46,0:46:99:0,105,1685 0/0:38,0:38:99:0,99,1485 0/0:60,0:60:99:0,120,1800 1 26753942 rs3811463 T C 170410.16 . AC=114;AF=0.570;AN=200;BaseQRankSum=0.706;ClippingRankSum=-2.950e-01;DB;DP=8251;FS=0.601;InbreedingCoeff=0.1496;MLEAC=116;MLEAF=0.580;MQ=50.90;MQRankSum=0.148;QD=24.20;ReadPosRankSum=0.053;SOR=0.770 GT:AD:DP:GQ:PL 1/1:1,73:74:99:2703,189,0 0/1:64,70:134:99:2142,0,1878 1/1:11,134:145:62:4287,62,0 0/0:47,0:47:99:0,99,1485 0/1:46,49:95:99:1558,0,1370 0/1:79,70:149:99:2121,0,2367 1/1:0,69:69:99:2429,207,0 0/1:27,32:59:99:968,0,814 0/1:50,46:96:99:1423,0,1492 1/1:4,139:143:99:4655,285,0 0/0:41,0:41:99:0,102,1530 1/1:0,45:45:99:1613,134,0 0/0:6,0:6:0:0,0,149 1/1:0,75:75:99:2834,226,0 0/1:32,33:65:99:971,0,967 1/1:0,76:76:99:2708,228,0 1/1:0,87:87:99:3247,261,0 0/1:58,50:108:99:1434,0,1711 1/1:4,101:105:99:3352,174,0 0/0:27,0:27:75:0,75,1125 0/0:52,0:52:99:0,117,1755 1/1:8,115:123:71:3829,71,0 0/1:20,52:72:99:1678,0,490 1/1:1,204:205:99:7246,573,0 1/1:0,56:56:99:2095,169,0 0/1:56,56:112:99:1611,0,1450 0/1:32,17:49:99:445,0,1059 1/1:2,61:63:99:2142,119,0 0/1:29,31:60:99:945,0,884 1/1:0,64:64:99:2245,191,0 0/1:21,29:50:99:915,0,587 0/0:46,0:46:99:0,102,1530 0/1:28,31:59:99:900,0,854 0/0:42,0:42:99:0,99,1485 1/1:0,94:94:99:3460,283,0 1/1:6,178:184:99:6000,365,0 1/1:0,76:76:99:2819,228,0 0/1:46,26:72:99:750,0,1463 1/1:0,65:65:99:2382,195,0 0/1:33,40:73:99:1204,0,971 0/1:26,30:56:99:837,0,727 0/0:42,0:42:99:0,99,1485 0/1:38,31:69:99:923,0,1141 1/1:0,43:43:99:1596,129,0 1/1:0,53:53:99:1937,159,0 0/1:61,49:110:99:1371,0,1817 0/0:45,0:45:99:0,105,1575 1/1:3,143:146:99:5051,336,0 0/0:45,0:45:99:0,99,1485 1/1:0,40:40:99:1389,120,0 0/1:29,34:63:99:1029,0,829 0/0:40,0:40:99:0,99,1485 0/1:44,31:75:99:831,0,1373 1/1:0,85:85:99:3129,255,0 0/0:45,0:45:99:0,105,1575 0/0:3,0:3:0:0,0,32 1/1:6,114:120:99:3792,131,0 0/0:85,0:85:99:0,120,1800 1/1:1,44:45:99:1491,108,0 0/1:31,42:73:99:1311,0,908 0/0:41,0:41:99:0,102,1530 1/1:0,72:72:99:2637,216,0 0/1:42,44:86:99:1336,0,1271 1/1:0,59:59:99:2204,178,0 1/1:0,60:60:99:2152,180,0 0/1:43,39:82:99:1152,0,1311 0/1:47,29:76:99:767,0,1509 1/1:0,75:75:99:2631,224,0 0/1:39,34:73:99:966,0,1069 0/0:41,0:41:99:0,100,1509 0/0:45,0:45:99:0,102,1530 1/1:0,64:64:99:2272,192,0 0/1:51,64:115:99:2053,0,1414 0/1:75,65:140:99:1860,0,2239 0/1:57,75:132:99:2287,0,1641 0/1:72,72:144:99:2028,0,2183 0/1:60,55:115:99:1718,0,1771 1/1:9,301:310:99:10280,599,0 0/1:58,54:112:99:1493,0,1638 0/1:22,38:60:99:1235,0,630 0/1:59,56:115:99:1724,0,1823 0/1:46,44:90:99:1276,0,1345 1/1:0,86:86:99:3164,259,0 0/1:39,49:88:99:1539,0,1164 0/0:23,0:23:51:0,51,765 0/0:291,0:291:93:0,93,9216 0/1:83,56:139:99:1579,0,2544 1/1:1,86:87:99:3061,233,0 1/1:0,40:40:99:1459,120,0 0/0:39,0:39:93:0,93,1395 1/1:0,71:71:99:2584,213,0 0/1:88,90:178:99:2731,0,2522 1/1:0,50:50:99:1799,150,0 0/0:3,0:3:0:0,0,26 1/1:0,90:90:99:3277,271,0 0/1:61,56:117:99:1692,0,1834 0/1:30,36:66:99:1137,0,925 0/1:37,33:70:99:985,0,1138 0/0:38,0:38:99:0,99,1485 0/0:60,0:60:99:0,120,1800 1 26754848 . T A 172.82 . AC=1;AF=5.000e-03;AN=200;BaseQRankSum=1.95;ClippingRankSum=1.02;DP=3719;FS=0.000;InbreedingCoeff=-0.0087;MLEAC=1;MLEAF=5.000e-03;MQ=24.96;MQRankSum=-7.750e-01;QD=7.51;ReadPosRankSum=0.527;SOR=0.627 GT:AD:DP:GQ:PL 0/0:45,0:45:99:0,102,1530 0/0:37,0:37:99:0,103,1544 0/0:54,0:54:99:0,102,1530 0/0:40,0:40:99:0,99,1485 0/0:34,0:34:99:0,99,1485 0/0:57,0:57:99:0,105,1575 0/0:15,0:15:30:0,30,450 0/0:34,0:34:90:0,90,1350 0/0:45,0:45:99:0,108,1620 0/0:41,0:41:99:0,99,1485 0/0:24,0:24:60:0,60,900 0/0:1,0:1:3:0,3,38 0/0:40,0:40:99:0,99,1485 0/0:25,0:25:72:0,72,1080 0/0:33,0:33:78:0,78,1170 0/0:39,0:39:99:0,102,1530 0/0:43,0:43:99:0,99,1485 0/0:50,0:50:99:0,102,1530 0/0:22,0:22:57:0,57,855 0/0:43,0:43:99:0,99,1485 0/0:54,0:54:99:0,99,1485 0/0:32,0:32:78:0,78,1170 0/0:71,0:71:99:0,120,1800 0/0:29,0:29:57:0,57,855 0/0:30,0:30:69:0,69,1035 0/0:32,0:32:81:0,81,1215 0/0:28,0:28:72:0,72,1080 0/0:26,0:26:57:0,57,855 0/0:40,0:40:99:0,99,1485 0/0:16,0:16:39:0,39,585 0/0:37,0:37:84:0,84,1260 0/0:35,0:35:90:0,90,1350 0/0:32,0:32:72:0,72,1080 0/0:36,0:36:72:0,72,1080 0/0:79,0:79:99:0,120,1800 0/0:35,0:35:96:0,96,1440 0/0:40,0:40:99:0,99,1485 0/0:27,0:27:60:0,60,900 0/0:36,0:36:78:0,78,1170 0/0:20,0:20:45:0,45,675 0/0:23,0:23:57:0,57,855 0/0:30,0:30:72:0,72,1080 0/0:18,0:18:48:0,48,720 0/0:38,0:38:90:0,90,1350 0/0:46,0:46:99:0,105,1575 0/0:45,0:45:99:0,105,1575 0/0:60,0:60:99:0,102,1530 0/0:39,0:39:99:0,99,1485 0/1:13,10:23:99:215,0,288 0/0:30,0:30:72:0,72,1080 0/0:32,0:32:81:0,81,1215 0/0:22,0:22:57:0,57,855 0/0:25,0:25:60:0,60,900 0/0:42,0:42:99:0,99,1485 0/0:3,0:3:9:0,9,89 0/0:46,0:46:99:0,105,1575 0/0:85,0:85:99:0,120,1800 0/0:30,0:30:72:0,72,1080 0/0:38,0:38:99:0,99,1485 0/0:41,0:41:99:0,102,1530 0/0:25,0:25:72:0,72,1080 0/0:35,0:35:90:0,90,1350 0/0:27,0:27:63:0,63,945 0/0:36,0:36:99:0,99,1485 0/0:40,0:40:93:0,93,1395 0/0:41,0:41:75:0,75,1125 0/0:26,0:26:69:0,69,1035 0/0:24,0:24:60:0,60,900 0/0:16,0:16:42:0,42,630 0/0:36,0:36:99:0,102,1530 0/0:25,0:25:63:0,63,945 0/0:39,0:39:99:0,102,1530 0/0:54,0:54:99:0,114,1710 0/0:46,0:46:99:0,102,1530 0/0:58,0:58:99:0,99,1485 0/0:55,0:55:99:0,120,1800 0/0:109,0:109:99:0,120,1800 0/0:43,0:43:99:0,102,1530 0/0:43,0:43:99:0,102,1530 0/0:48,0:48:99:0,99,1485 0/0:36,0:36:72:0,72,1080 0/0:47,0:47:99:0,111,1665 0/0:40,0:40:99:0,99,1485 0/0:16,0:16:39:0,39,585 0/0:69,0:69:99:0,105,1575 0/0:47,0:47:99:0,102,1530 0/0:49,0:49:99:0,105,1575 0/0:19,0:19:51:0,51,765 0/0:18,0:18:48:0,48,720 0/0:32,0:32:72:0,72,1080 0/0:37,0:37:99:0,99,1485 0/0:32,0:32:81:0,81,1215 0/0:1,0:1:3:0,3,36 0/0:41,0:41:99:0,99,1485 0/0:42,0:42:99:0,102,1530 0/0:41,0:41:87:0,87,1305 0/0:31,0:31:72:0,72,1080 0/0:38,0:38:99:0,99,1485 0/0:45,0:45:99:0,102,1530 1 26754875 rs200686814 A AC 8851.78 . AC=51;AF=0.258;AN=198;BaseQRankSum=-1.470e-01;ClippingRankSum=-8.300e-02;DB;DP=3386;FS=8.971;InbreedingCoeff=0.0898;MLEAC=54;MLEAF=0.273;MQ=29.81;MQRankSum=1.45;QD=8.03;ReadPosRankSum=-9.800e-01;SOR=1.015 GT:AD:DP:GQ:PGT:PID:PL 0/1:17,7:24:99:.:.:167,0,446 0/1:26,11:37:99:.:.:361,0,678 0/1:11,18:29:99:.:.:515,0,248 0/0:40,0:40:99:.:.:0,99,1485 0/1:27,3:30:1:0|1:26754875_A_AC:1,0,757 0/1:29,11:40:99:.:.:214,0,781 0/1:9,3:12:85:0|1:26754875_A_AC:85,0,242 0/1:19,4:23:84:.:.:84,0,520 0/1:27,9:36:99:.:.:203,0,728 0/0:45,0:45:99:.:.:0,108,1620 0/0:39,0:39:81:.:.:0,81,1215 0/1:9,4:13:99:.:.:102,0,236 0/0:1,0:1:3:.:.:0,3,33 0/0:33,0:33:0:.:.:0,0,996 0/0:24,0:24:0:.:.:0,0,683 1/1:0,10:10:33:.:.:336,33,0 0/1:22,3:25:42:0|1:26754875_A_AC:42,0,602 0/1:24,7:31:99:.:.:122,0,659 1/1:1,16:17:28:.:.:522,28,0 0/0:24,0:24:57:.:.:0,57,855 0/0:43,0:43:99:.:.:0,99,1485 0/1:31,7:38:99:.:.:129,0,845 0/0:42,0:42:56:.:.:0,56,1308 0/1:38,28:66:99:.:.:712,0,991 1/1:0,3:3:15:1|1:26754875_A_AC:148,15,0 0/0:23,0:23:0:.:.:0,0,271 0/0:36,0:36:75:.:.:0,75,1125 1/1:0,7:7:36:.:.:362,36,0 0/0:32,0:32:72:.:.:0,72,1080 0/0:45,0:45:99:.:.:0,99,1485 0/0:21,0:21:0:.:.:0,0,474 0/0:37,0:37:90:.:.:0,90,1350 0/0:38,0:38:99:.:.:0,99,1485 0/0:36,0:36:66:.:.:0,66,990 0/1:1,8:9:5:.:.:212,0,5 0/1:54,7:61:99:.:.:105,0,1493 0/0:37,0:37:90:.:.:0,90,1350 0/0:40,0:40:99:.:.:0,99,1485 1/1:1,10:11:13:.:.:335,13,0 0/0:38,0:38:99:.:.:0,99,1485 0/0:26,0:26:63:.:.:0,63,902 0/0:25,0:25:57:.:.:0,57,855 0/0:38,0:38:99:.:.:0,99,1485 0/1:16,4:20:84:.:.:84,0,438 0/0:32,0:32:66:.:.:0,66,990 0/0:61,0:61:84:.:.:0,84,1750 0/0:45,0:45:99:.:.:0,105,1575 0/0:60,0:60:99:.:.:0,102,1530 0/0:42,0:42:99:.:.:0,99,1485 0/1:9,5:14:99:.:.:115,0,241 0/0:37,0:37:93:.:.:0,93,1395 0/0:31,0:31:84:.:.:0,84,1260 0/0:19,0:19:0:.:.:0,0,506 0/1:14,3:17:93:.:.:93,0,371 0/0:42,0:42:99:.:.:0,99,1485 0/0:2,0:2:6:.:.:0,6,56 0/0:46,0:46:99:.:.:0,105,1575 0/0:85,0:85:99:.:.:0,120,1800 1/1:0,9:9:30:.:.:286,30,0 0/1:16,4:20:61:.:.:61,0,446 0/0:41,0:41:99:.:.:0,102,1530 1/1:0,1:1:9:1|1:26754875_A_AC:91,9,0 0/0:25,0:25:0:.:.:0,0,580 1/1:0,11:11:39:.:.:393,39,0 0/0:41,0:41:99:.:.:0,99,1485 0/0:28,0:28:0:.:.:0,0,595 0/0:18,0:18:39:.:.:0,39,585 0/1:16,5:21:88:.:.:88,0,437 0/0:20,0:20:0:.:.:0,0,467 0/0:23,0:23:60:.:.:0,60,900 0/0:36,0:36:99:.:.:0,102,1530 0/0:37,0:37:99:.:.:0,99,1485 0/1:27,4:31:33:0|1:26754875_A_AC:33,0,742 0/1:42,14:56:99:.:.:343,0,1141 0/1:21,9:30:99:.:.:205,0,569 0/1:30,9:39:99:.:.:179,0,819 0/1:39,11:50:99:.:.:211,0,1042 0/1:80,16:96:99:.:.:317,0,2152 0/1:30,7:37:99:.:.:156,0,793 0/0:41,0:41:99:.:.:0,99,1485 0/0:48,0:48:99:.:.:0,99,1485 0/0:25,0:25:0:.:.:0,0,556 0/1:27,5:32:53:.:.:53,0,748 0/1:14,7:21:99:.:.:180,0,368 0/0:14,0:14:39:.:.:0,39,585 0/0:69,0:69:99:.:.:0,105,1575 0/0:47,0:47:99:.:.:0,102,1530 0/1:4,21:25:52:.:.:575,0,52 0/0:12,0:12:13:.:.:0,13,362 0/0:24,0:24:57:.:.:0,57,855 1/1:1,9:10:7:.:.:269,7,0 0/0:37,0:37:99:.:.:0,99,1485 0/0:24,0:24:0:.:.:0,0,692 ./.:2,0:2 1/1:1,20:21:37:.:.:581,37,0 0/0:42,0:42:99:.:.:0,102,1530 0/0:24,0:24:0:.:.:0,0,619 0/1:15,5:20:99:.:.:150,0,403 0/0:38,0:38:99:.:.:0,99,1485 0/0:45,0:45:99:.:.:0,102,1530 1 26754892 . TACAC T 765.75 . AC=1;AF=5.000e-03;AN=200;BaseQRankSum=-1.803e+00;ClippingRankSum=-6.700e-02;DP=3820;FS=1.861;InbreedingCoeff=-0.0065;MLEAC=1;MLEAF=5.000e-03;MQ=35.72;MQRankSum=2.27;QD=7.73;ReadPosRankSum=-2.576e+00;SOR=0.585 GT:AD:DP:GQ:PL 0/0:44,0:44:99:0,99,1485 0/0:47,0:47:99:0,105,1575 0/0:53,0:53:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:43,0:43:99:0,105,1575 0/0:46,0:46:99:0,99,1485 0/0:34,0:34:99:0,99,1235 0/0:43,0:43:99:0,108,1620 0/0:45,0:45:99:0,105,1575 0/0:45,0:45:99:0,108,1620 0/0:42,0:42:99:0,99,1485 0/0:21,0:21:60:0,60,870 0/0:3,0:3:9:0,9,94 0/0:37,0:37:99:0,99,1485 0/0:27,0:27:81:0,81,1051 0/0:26,0:26:78:0,78,932 0/0:40,0:40:99:0,99,1485 0/0:40,0:40:99:0,102,1530 0/0:38,0:38:99:0,102,1408 0/0:28,0:28:60:0,60,900 0/0:43,0:43:99:0,99,1485 0/0:49,0:49:99:0,99,1485 0/0:36,0:36:99:0,99,1485 0/0:46,0:46:99:0,105,1575 0/0:19,0:19:57:0,57,703 0/0:36,0:36:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:33,0:33:99:0,99,1228 0/0:35,0:35:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:37,0:37:99:0,102,1530 0/0:41,0:41:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:39,0:39:99:0,99,1397 0/0:33,0:33:99:0,99,1202 0/0:43,0:43:99:0,99,1189 0/0:39,0:39:99:0,105,1575 0/0:40,0:40:99:0,99,1485 0/0:25,0:25:72:0,72,1080 0/0:38,0:38:99:0,99,1485 0/0:37,0:37:99:0,105,1575 0/0:37,0:37:99:0,102,1530 0/0:38,0:38:99:0,99,1485 0/0:32,0:32:84:0,84,1260 0/0:36,0:36:99:0,99,1485 0/0:47,0:47:99:0,102,1530 0/0:45,0:45:99:0,105,1575 0/0:60,0:60:99:0,102,1530 0/0:43,0:43:99:0,105,1575 0/0:23,0:23:60:0,60,900 0/0:38,0:38:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:35,0:35:99:0,99,1485 0/0:35,0:35:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:4,0:4:12:0,12,127 0/0:46,0:46:99:0,105,1575 0/1:72,27:99:99:808,0,3979 0/0:21,0:21:60:0,60,660 0/0:38,0:38:90:0,90,1350 0/0:41,0:41:99:0,102,1530 0/0:34,0:34:99:0,99,1361 0/0:29,0:29:81:0,81,1215 0/0:21,0:21:60:0,60,900 0/0:41,0:41:99:0,99,1485 0/0:39,0:39:99:0,102,1530 0/0:35,0:35:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:24,0:24:72:0,72,840 0/0:35,0:35:99:0,99,1485 0/0:36,0:36:99:0,102,1530 0/0:37,0:37:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:54,0:54:99:0,102,1530 0/0:42,0:42:99:0,102,1530 0/0:47,0:47:99:0,99,1485 0/0:51,0:51:99:0,99,1485 0/0:77,0:77:99:0,120,1800 0/0:49,0:49:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:48,0:48:99:0,99,1485 0/0:35,0:35:99:0,102,1530 0/0:39,0:39:99:0,99,1485 0/0:39,0:39:99:0,102,1440 0/0:23,0:23:60:0,60,900 0/0:69,0:69:99:0,105,1575 0/0:47,0:47:99:0,102,1530 0/0:36,0:36:99:0,99,1485 0/0:19,0:19:57:0,57,705 0/0:31,0:31:84:0,84,1260 0/0:22,0:22:63:0,63,945 0/0:37,0:37:99:0,99,1485 0/0:28,0:28:72:0,72,1080 0/0:3,0:3:9:0,9,100 0/0:34,0:34:99:0,99,1207 0/0:42,0:42:99:0,102,1530 0/0:27,0:27:72:0,72,1080 0/0:42,0:42:99:0,102,1530 0/0:38,0:38:99:0,99,1485 0/0:45,0:45:99:0,102,1530 1 26755035 rs35039079 CT C 4073.89 . AC=39;AF=0.210;AN=186;BaseQRankSum=0.103;ClippingRankSum=-4.740e-01;DB;DP=2173;FS=0.000;InbreedingCoeff=0.0362;MLEAC=50;MLEAF=0.269;MQ=45.24;MQRankSum=0.676;QD=16.70;ReadPosRankSum=0.742;SOR=2.880 GT:AD:DP:GQ:PL 0/0:15,0:15:0:0,0,347 0/0:18,0:18:0:0,0,347 0/1:2,8:10:19:152,0,19 0/1:6,5:11:86:86,0,108 1/1:0,7:7:21:171,21,0 0/0:24,0:24:0:0,0,137 0/0:16,0:16:0:0,0,395 0/0:14,0:14:7:0,7,360 0/1:5,5:10:88:88,0,90 1/1:1,11:12:19:232,19,0 0/0:19,0:19:0:0,0,254 ./.:8,0:8 ./.:0,0:0 0/0:18,0:18:0:0,0,325 0/0:16,0:16:13:0,13,392 0/0:13,0:13:0:0,0,20 0/0:11,0:11:0:0,0,41 0/1:1,4:5:7:72,0,7 0/1:1,6:7:3:116,0,3 0/0:10,0:10:0:0,0,6 0/1:4,5:9:67:92,0,67 0/1:2,7:9:22:129,0,22 0/0:20,0:20:0:0,0,44 1/1:0,10:10:30:224,30,0 0/0:9,0:9:0:0,0,46 0/0:19,0:19:0:0,0,233 0/0:17,0:17:0:0,0,248 0/0:9,0:9:0:0,0,178 0/0:13,0:13:0:0,0,99 0/0:21,0:21:23:0,23,484 0/0:9,0:9:0:0,0,105 0/0:19,0:19:0:0,0,305 0/1:1,6:7:3:126,0,3 1/1:0,5:5:15:123,15,0 0/0:19,0:19:5:0,5,451 1/1:1,12:13:15:269,15,0 0/0:37,0:37:42:0,42,630 1/1:1,10:11:9:210,9,0 0/0:9,0:9:12:0,12,180 0/0:14,0:14:0:0,0,64 0/0:10,0:10:0:0,0,219 0/0:11,0:11:0:0,0,308 0/0:19,0:19:0:0,0,522 ./.:12,0:12 1/1:0,6:6:18:141,18,0 0/0:24,0:24:0:0,0,508 0/1:5,6:11:78:112,0,78 0/1:1,6:7:3:121,0,3 0/0:31,0:31:42:0,42,630 0/0:19,0:19:0:0,0,128 0/0:25,0:25:0:0,0,624 0/0:20,0:20:4:0,4,502 0/0:23,0:23:0:0,0,373 0/0:13,0:13:0:0,0,263 0/0:5,0:5:0:0,0,72 ./.:2,0:2 1/1:0,5:5:15:122,15,0 0/1:3,9:12:37:168,0,37 0/0:11,0:11:0:0,0,239 0/0:15,0:15:0:0,0,194 0/0:52,0:52:10:0,10,1231 0/0:19,0:19:0:0,0,142 0/0:16,0:16:0:0,0,204 0/0:15,0:15:0:0,0,242 0/0:21,0:21:0:0,0,327 0/0:18,0:18:0:0,0,281 0/0:18,0:18:0:0,0,335 ./.:17,0:17 0/0:16,0:16:27:0,27,405 0/0:9,0:9:0:0,0,131 0/0:22,0:22:0:0,0,426 1/1:0,5:5:14:120,14,0 0/0:21,0:21:23:0,23,520 0/1:1,4:5:9:81,0,9 0/1:2,9:11:10:183,0,10 0/0:28,0:28:0:0,0,585 1/1:1,6:10:4:146,4,0 1/1:2,24:32:45:559,45,0 0/0:27,0:27:0:0,0,580 0/0:34,0:34:0:0,0,715 0/1:6,5:11:81:81,0,104 0/0:19,0:19:0:0,0,360 0/0:34,0:34:0:0,0,499 0/0:16,0:16:0:0,0,356 0/0:9,0:9:6:0,6,90 0/0:84,0:84:15:0,15,1879 0/1:3,3:6:53:53,0,55 0/0:23,0:23:0:0,0,471 0/0:10,0:10:0:0,0,144 0/0:12,0:12:0:0,0,149 0/0:14,0:14:0:0,0,32 0/0:41,0:41:0:0,0,642 ./.:10,0:10 ./.:0,0:0 0/0:16,0:16:0:0,0,267 1/1:0,6:6:18:138,18,0 0/0:22,0:22:0:0,0,589 0/0:22,0:22:9:0,9,135 0/0:34,0:34:0:0,0,674 0/0:27,0:27:0:0,0,346 1 26755051 rs61777865 T A 36.11 . AC=1;AF=5.102e-03;AN=196;BaseQRankSum=-7.310e-01;ClippingRankSum=-7.310e-01;DB;DP=1210;FS=0.000;InbreedingCoeff=-0.0959;MLEAC=1;MLEAF=5.102e-03;MQ=50.58;MQRankSum=0.731;QD=7.22;ReadPosRankSum=-7.310e-01;SOR=1.981 GT:AD:DP:GQ:PL 0/0:7,0:7:18:0,18,270 0/0:15,0:15:0:0,0,335 0/0:19,0:19:39:0,39,585 0/0:18,0:18:30:0,30,450 0/0:14,0:14:0:0,0,308 0/0:8,0:8:21:0,21,315 0/0:8,0:8:0:0,0,229 0/0:6,0:6:9:0,9,135 0/0:10,0:10:24:0,24,360 0/0:25,0:25:42:0,42,630 0/0:13,0:13:33:0,33,495 0/0:4,0:4:3:0,3,45 ./.:0,0:0 0/0:6,0:6:6:0,6,90 0/0:10,0:10:0:0,0,308 0/0:9,0:9:15:0,15,225 0/0:7,0:7:9:0,9,135 0/0:16,0:16:27:0,27,405 0/0:10,0:10:21:0,21,315 0/0:7,0:7:0:0,0,173 0/0:17,0:17:0:0,0,483 0/0:20,0:20:26:0,26,644 0/0:14,0:14:27:0,27,405 0/0:22,0:22:36:0,36,540 0/0:4,0:4:0:0,0,73 0/0:9,0:9:18:0,18,270 0/0:7,0:7:0:0,0,187 0/0:6,0:6:0:0,0,146 0/0:9,0:9:15:0,15,225 0/0:12,0:12:27:0,27,405 0/0:9,0:9:24:0,24,360 0/0:14,0:14:0:0,0,376 0/0:11,0:11:18:0,18,270 0/0:12,0:12:24:0,24,360 0/0:6,0:6:12:0,12,180 0/0:24,0:24:45:0,45,675 0/0:6,0:6:15:0,15,225 0/0:18,0:18:36:0,36,540 0/0:4,0:4:12:0,12,144 0/0:9,0:9:18:0,18,270 0/0:5,0:5:6:0,6,90 0/0:6,0:6:12:0,12,180 0/0:5,0:5:9:0,9,135 0/0:9,0:9:21:0,21,315 0/0:12,0:12:1:0,1,378 0/0:18,0:18:36:0,36,540 0/0:15,0:15:33:0,33,495 0/0:15,0:15:36:0,36,540 0/0:8,0:8:0:0,0,221 0/0:12,0:12:24:0,24,360 0/0:10,0:10:18:0,18,270 0/0:13,0:13:0:0,0,271 0/0:9,0:9:9:0,9,135 0/0:5,0:5:15:0,15,179 0/0:4,0:4:6:0,6,90 0/0:2,0:2:6:0,6,63 0/0:15,0:15:0:0,0,259 0/0:20,0:20:30:0,30,450 0/0:4,0:4:0:0,0,81 0/0:10,0:10:18:0,18,270 0/0:24,0:24:0:0,0,667 0/0:14,0:14:27:0,27,405 0/0:10,0:10:18:0,18,270 0/0:5,0:5:12:0,12,180 0/0:9,0:9:18:0,18,270 0/0:16,0:16:33:0,33,495 0/0:10,0:10:18:0,18,270 0/0:10,0:10:18:0,18,270 0/0:8,0:8:0:0,0,219 0/0:5,0:5:12:0,12,180 0/0:15,0:15:30:0,30,450 0/0:12,0:12:18:0,18,270 0/0:15,0:15:0:0,0,402 0/0:16,0:16:0:0,0,279 0/0:17,0:17:0:0,0,353 0/0:20,0:20:0:0,0,569 0/0:19,0:19:0:0,0,565 0/0:57,0:57:90:0,90,1350 0/0:15,0:15:24:0,24,360 0/0:16,0:16:30:0,30,450 0/0:19,0:19:30:0,30,450 0/0:10,0:10:15:0,15,225 0/1:1,4:5:14:75,0,14 0/0:11,0:11:30:0,30,450 0/0:1,0:1:3:0,3,40 0/0:43,0:43:0:0,0,1053 0/0:21,0:21:39:0,39,585 0/0:12,0:12:0:0,0,240 0/0:9,0:9:27:0,27,317 0/0:8,0:8:0:0,0,225 0/0:10,0:10:15:0,15,225 0/0:19,0:19:0:0,0,554 0/0:8,0:8:12:0,12,180 ./.:0,0:0 0/0:6,0:6:9:0,9,135 0/0:16,0:16:0:0,0,230 0/0:6,0:6:9:0,9,135 0/0:8,0:8:18:0,18,270 0/0:23,0:23:0:0,0,501 0/0:17,0:17:27:0,27,446 1 26755073 rs34787247 A G 8039.43 . AC=73;AF=0.553;AN=132;BaseQRankSum=1.79;ClippingRankSum=-3.870e-01;DB;DP=572;FS=0.000;InbreedingCoeff=0.5880;MLEAC=89;MLEAF=0.674;MQ=32.47;MQRankSum=-1.741e+00;QD=28.61;ReadPosRankSum=-3.480e-01;SOR=5.769 GT:AD:DP:GQ:PL 1/1:0,4:4:12:128,12,0 1/1:0,11:11:33:344,33,0 1/1:0,8:8:24:273,24,0 0/0:10,0:10:0:0,0,49 0/0:10,0:10:0:0,0,122 ./.:5,0:5 1/1:0,5:5:15:146,15,0 0/0:3,0:3:6:0,6,90 0/0:7,0:7:0:0,0,24 1/1:0,7:7:21:221,21,0 0/0:10,0:10:18:0,18,259 ./.:4,0:4 ./.:0,0:0 1/1:0,4:4:12:120,12,0 0/0:5,0:5:0:0,0,81 ./.:2,0:2 1/1:0,4:4:12:139,12,0 0/0:8,0:8:0:0,0,122 0/1:1,9:10:6:266,0,6 ./.:0,0:0 ./.:10,0:10 1/1:0,7:7:21:197,21,0 1/1:0,6:6:18:199,18,0 1/1:0,12:12:36:386,36,0 ./.:0,0:0 ./.:5,0:5 1/1:0,6:6:18:208,18,0 ./.:3,0:3 ./.:4,0:4 1/1:0,4:4:12:131,12,0 0/0:3,0:3:9:0,9,117 1/1:0,8:8:24:269,24,0 ./.:3,0:3 1/1:0,5:5:15:167,15,0 ./.:3,0:3 1/1:0,11:11:33:362,33,0 1/1:0,4:4:12:110,12,0 1/1:0,7:7:21:233,21,0 ./.:1,0:1 1/1:0,5:5:15:130,15,0 0/0:2,0:2:0:0,0,4 0/0:8,0:8:21:0,21,315 ./.:4,0:4 1/1:0,5:5:15:158,15,0 ./.:1,0:1 0/1:7,5:12:99:119,0,205 0/1:5,6:11:99:141,0,133 1/1:0,10:10:30:330,30,0 ./.:6,0:6 1/1:0,5:5:15:159,15,0 1/1:0,10:10:29:264,29,0 0/0:8,0:8:18:0,18,270 ./.:2,0:2 ./.:4,0:4 0/0:2,0:2:6:0,6,72 0/0:2,0:2:6:0,6,58 1/1:0,6:6:18:186,18,0 ./.:7,0:7 ./.:1,0:1 0/0:3,0:3:0:0,0,22 0/0:12,0:12:30:0,30,450 1/1:0,4:4:12:125,12,0 0/0:4,0:4:0:0,0,63 ./.:4,0:4 ./.:2,0:2 0/0:7,0:7:15:0,15,225 1/1:0,4:4:12:121,12,0 1/1:0,9:9:27:311,27,0 ./.:2,0:2 0/0:4,0:4:12:0,12,149 0/0:6,0:6:0:0,0,74 ./.:5,0:5 0/0:6,0:6:0:0,0,127 ./.:2,0:2 1/1:0,4:4:12:129,12,0 ./.:7,0:7 1/1:0,11:11:33:370,33,0 1/1:0,18:18:53:516,53,0 0/0:9,0:9:0:0,0,234 0/0:8,0:8:0:0,0,109 ./.:8,0:8 0/0:3,0:3:0:0,0,34 ./.:2,0:2 0/0:6,0:6:0:0,0,119 ./.:0,0:0 0/0:13,0:13:0:0,0,180 0/0:12,0:12:0:0,0,113 1/1:0,6:6:18:171,18,0 1/1:0,4:4:12:133,12,0 ./.:2,0:2 ./.:5,0:5 1/1:1,10:11:23:316,23,0 ./.:2,0:2 ./.:0,0:0 1/1:0,5:5:15:160,15,0 ./.:7,0:7 0/0:2,0:2:6:0,6,80 1/1:0,5:5:15:155,15,0 1/1:0,13:13:39:421,39,0 0/0:3,0:3:6:0,6,90 1 26755604 rs189937738 C G 105.48 . AC=2;AF=0.012;AN=172;DB;DP=281;FS=0.000;InbreedingCoeff=0.0304;MLEAC=1;MLEAF=5.814e-03;MQ=33.63;QD=21.10;SOR=3.611 GT:AD:DP:GQ:PL 0/0:6,0:6:15:0,15,225 0/0:2,0:2:6:0,6,76 0/0:5,0:5:15:0,15,168 ./.:0,0:0 0/0:1,0:1:3:0,3,33 0/0:3,0:3:6:0,6,90 0/0:3,0:3:9:0,9,103 0/0:2,0:2:3:0,3,45 0/0:3,0:3:9:0,9,96 0/0:4,0:4:12:0,12,146 0/0:4,0:4:12:0,12,121 0/0:3,0:3:9:0,9,111 ./.:0,0:0 0/0:3,0:3:9:0,9,104 0/0:6,0:6:18:0,18,219 0/0:7,0:7:18:0,18,270 0/0:2,0:2:6:0,6,73 0/0:2,0:2:3:0,3,45 0/0:3,0:3:6:0,6,90 0/0:1,0:1:3:0,3,29 0/0:3,0:3:9:0,9,101 0/0:6,0:6:18:0,18,218 0/0:3,0:3:9:0,9,105 0/0:5,0:5:15:0,15,180 ./.:0,0:0 0/0:2,0:2:6:0,6,61 0/0:1,0:1:3:0,3,20 0/0:1,0:1:3:0,3,34 0/0:3,0:3:9:0,9,108 0/0:2,0:2:6:0,6,63 0/0:2,0:2:6:0,6,68 0/0:2,0:2:6:0,6,78 0/0:6,0:6:18:0,18,209 0/0:1,0:1:3:0,3,31 0/0:4,0:4:12:0,12,145 0/0:3,0:3:6:0,6,90 0/0:3,0:3:9:0,9,111 0/0:6,0:6:18:0,18,202 ./.:0,0:0 0/0:1,0:1:3:0,3,37 0/0:1,0:1:3:0,3,33 0/0:2,0:2:3:0,3,45 0/0:1,0:1:3:0,3,29 0/0:2,0:2:6:0,6,75 0/0:1,0:1:3:0,3,36 ./.:0,0:0 0/0:4,0:4:12:0,12,135 0/0:6,0:6:15:0,15,225 0/0:7,0:7:21:0,21,225 0/0:2,0:2:6:0,6,74 0/0:1,0:1:3:0,3,38 ./.:0,0:0 0/0:3,0:3:6:0,6,90 0/0:1,0:1:3:0,3,34 0/0:1,0:1:3:0,3,35 ./.:0,0:0 0/0:4,0:4:12:0,12,138 0/0:10,0:10:7:0,7,319 0/0:2,0:2:6:0,6,77 0/0:2,0:2:6:0,6,68 0/0:3,0:3:9:0,9,104 0/0:4,0:4:9:0,9,135 0/0:1,0:1:3:0,3,29 0/0:3,0:3:9:0,9,95 0/0:4,0:4:12:0,12,143 0/0:1,0:1:3:0,3,34 0/0:4,0:4:12:0,12,142 ./.:0,0:0 0/0:2,0:2:6:0,6,71 0/0:2,0:2:3:0,3,45 0/0:2,0:2:6:0,6,77 0/0:4,0:4:12:0,12,139 1/1:0,5:5:15:159,15,0 ./.:0,0:0 0/0:2,0:2:6:0,6,77 0/0:5,0:5:15:0,15,165 0/0:2,0:2:6:0,6,77 0/0:8,0:8:24:0,24,310 0/0:3,0:3:9:0,9,109 0/0:3,0:3:9:0,9,115 0/0:4,0:4:12:0,12,146 0/0:3,0:3:9:0,9,108 ./.:0,0:0 0/0:1,0:1:3:0,3,37 0/0:1,0:1:3:0,3,33 0/0:12,0:12:30:0,30,450 0/0:5,0:5:15:0,15,168 0/0:3,0:3:9:0,9,98 ./.:1,0:1 0/0:2,0:2:6:0,6,73 0/0:4,0:4:12:0,12,147 0/0:5,0:5:15:0,15,187 0/0:1,0:1:3:0,3,30 ./.:0,0:0 0/0:2,0:2:6:0,6,69 0/0:8,0:8:24:0,24,304 ./.:3,0:3 ./.:0,0:0 0/0:2,0:2:6:0,6,67 0/0:2,0:2:6:0,6,60 1 26755919 rs9438623 A G 92622.58 . AC=159;AF=0.803;AN=198;BaseQRankSum=1.61;ClippingRankSum=0.031;DB;DP=4295;FS=7.012;InbreedingCoeff=-0.0146;MLEAC=161;MLEAF=0.813;MQ=37.01;MQRankSum=-1.732e+00;QD=22.31;ReadPosRankSum=-6.540e-01;SOR=1.039 GT:AD:DP:GQ:PL 1/1:0,21:21:63:657,63,0 1/1:0,44:44:99:1438,132,0 1/1:3,43:46:37:1307,37,0 1/1:0,39:39:99:1295,117,0 1/1:0,35:35:99:1095,105,0 1/1:2,45:47:74:1364,74,0 1/1:0,19:19:57:632,57,0 0/1:26,20:46:99:503,0,749 0/1:32,14:46:99:311,0,993 1/1:0,92:92:99:2893,276,0 0/1:33,12:45:99:251,0,998 1/1:0,20:20:60:639,60,0 0/0:4,0:4:12:0,12,146 1/1:0,36:36:99:1146,108,0 0/1:27,21:48:99:477,0,795 1/1:0,29:29:87:949,87,0 1/1:0,30:30:90:1003,90,0 0/1:12,35:47:99:993,0,263 1/1:1,49:50:99:1550,111,0 1/1:0,12:12:36:350,36,0 0/1:37,27:64:99:713,0,1153 0/1:5,53:58:4:1570,0,4 1/1:0,31:31:93:1068,93,0 1/1:1,89:90:99:2800,261,0 1/1:0,18:18:54:624,54,0 0/1:28,18:46:99:393,0,728 1/1:0,33:33:99:1073,99,0 1/1:1,26:27:43:775,43,0 0/1:17,10:27:99:237,0,510 0/1:3,26:29:12:709,0,12 0/1:19,13:32:99:328,0,563 1/1:0,33:33:99:1056,99,0 1/1:0,27:27:81:889,81,0 1/1:0,22:22:66:719,66,0 1/1:1,43:44:96:1401,96,0 1/1:1,69:70:99:2123,171,0 1/1:0,35:35:99:1085,105,0 1/1:0,33:33:99:1093,99,0 1/1:0,28:28:84:893,84,0 1/1:0,23:23:69:750,69,0 0/1:21,12:33:99:300,0,664 0/1:12,6:18:99:135,0,390 1/1:0,31:31:93:985,93,0 1/1:0,22:22:66:727,66,0 1/1:0,15:15:45:451,45,0 0/1:42,26:68:99:639,0,1247 0/1:44,18:62:99:405,0,1295 1/1:1,67:68:99:2088,177,0 0/1:33,15:48:99:362,0,1028 1/1:0,23:23:69:747,69,0 1/1:0,33:33:99:1052,99,0 1/1:0,29:29:87:935,87,0 1/1:0,33:33:99:997,99,0 1/1:0,24:24:72:810,72,0 0/0:42,0:42:99:0,108,1620 ./.:1,0:1 1/1:0,77:77:99:2442,231,0 0/1:101,48:149:99:1145,0,3008 1/1:0,18:18:54:565,54,0 0/1:27,13:40:99:307,0,806 0/1:33,22:55:99:536,0,998 1/1:0,38:38:99:1230,114,0 0/1:41,11:52:99:239,0,1250 1/1:0,27:27:81:830,81,0 1/1:0,31:31:92:981,92,0 0/1:33,21:54:99:540,0,1003 1/1:0,26:26:78:863,78,0 1/1:0,33:33:99:1042,99,0 1/1:0,33:33:98:1054,98,0 1/1:0,22:22:66:779,66,0 1/1:0,26:26:78:819,78,0 1/1:0,34:34:99:1083,102,0 0/1:40,27:67:99:673,0,1172 1/1:1,53:54:99:1709,123,0 1/1:1,58:59:99:1846,137,0 0/1:49,24:73:99:542,0,1525 1/1:0,35:35:99:1180,105,0 1/1:1,124:125:99:3914,337,0 0/1:55,27:82:99:619,0,1687 0/1:27,24:51:99:618,0,850 0/1:55,26:81:99:566,0,1711 0/1:36,23:59:99:572,0,1081 1/1:0,50:50:99:1654,150,0 0/1:33,12:45:99:237,0,1018 0/1:4,8:12:99:240,0,106 0/1:122,50:172:99:1095,0,3791 1/1:0,55:55:99:1714,165,0 1/1:1,29:30:80:909,80,0 1/1:0,18:18:54:560,54,0 1/1:0,18:18:54:596,54,0 1/1:0,37:37:99:1208,111,0 1/1:0,74:74:99:2442,222,0 1/1:0,22:22:66:707,66,0 0/0:3,0:3:0:0,0,35 1/1:0,35:35:99:1066,105,0 1/1:1,54:55:99:1654,155,0 0/1:23,19:42:99:526,0,672 1/1:0,22:22:66:734,66,0 1/1:0,35:35:99:1131,105,0 0/0:51,0:51:99:0,106,1710 1 26756174 rs11247957 G A 60691.64 . AC=46;AF=0.230;AN=200;BaseQRankSum=-3.293e+00;ClippingRankSum=0.308;DB;DP=6259;FS=1.846;InbreedingCoeff=0.1443;MLEAC=46;MLEAF=0.230;MQ=45.97;MQRankSum=0.101;QD=17.03;ReadPosRankSum=0.117;SOR=0.840 GT:AD:DP:GQ:PL 0/1:33,34:67:99:900,0,909 0/0:42,0:42:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:40,0:40:99:0,105,1575 0/0:37,0:37:99:0,99,1485 0/0:45,0:45:99:0,105,1575 0/1:27,28:55:99:753,0,782 0/0:40,0:40:99:0,99,1485 0/0:42,0:42:99:0,99,1485 1/1:5,244:249:99:7874,582,0 0/0:37,0:37:99:0,99,1485 0/1:32,22:54:99:614,0,880 0/0:4,0:4:12:0,12,152 0/1:37,42:79:99:1141,0,1079 0/0:41,0:41:99:0,99,1485 0/0:44,0:44:99:0,102,1530 0/1:41,36:77:99:1020,0,1249 0/0:42,0:42:99:0,99,1485 0/0:51,0:51:99:0,99,1485 0/0:33,0:33:72:0,72,1080 0/0:44,0:44:99:0,102,1530 0/1:97,68:165:99:1793,0,2789 0/1:32,32:64:99:954,0,889 0/1:105,85:190:99:2257,0,2967 0/0:40,0:40:99:0,99,1485 0/0:39,0:39:81:0,81,1215 0/1:34,32:66:99:860,0,947 0/0:41,0:41:99:0,99,1485 0/1:22,26:48:99:773,0,617 1/1:0,57:57:99:1926,171,0 0/0:40,0:40:99:0,99,1454 0/0:42,0:42:99:0,102,1530 0/1:31,24:55:99:660,0,863 0/0:40,0:40:99:0,105,1575 0/0:44,0:44:99:0,99,1485 0/1:76,70:146:99:1843,0,2073 1/1:0,61:61:99:2001,183,0 0/1:31,33:64:99:946,0,904 0/0:42,0:42:99:0,99,1485 0/1:37,48:85:99:1375,0,1040 0/1:32,22:54:99:568,0,957 0/0:42,0:42:99:0,99,1485 0/1:31,35:66:99:963,0,825 0/1:33,16:49:99:380,0,976 1/1:0,46:46:99:1519,138,0 0/0:53,0:53:99:0,111,1665 0/0:46,0:46:99:0,105,1575 1/1:10,171:181:99:5093,189,0 0/0:41,0:41:99:0,102,1530 0/1:17,17:34:99:447,0,431 0/1:25,41:66:99:1175,0,673 0/0:43,0:43:99:0,114,1710 0/0:36,0:36:99:0,99,1485 0/1:35,32:67:99:862,0,1004 0/0:48,0:48:99:0,109,1665 0/0:7,0:7:0:0,0,44 1/1:6,112:118:99:3436,202,0 0/0:88,0:88:99:0,120,1800 0/0:38,0:38:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:51,0:51:99:0,120,1800 0/0:39,0:39:99:0,99,1485 0/0:42,0:42:99:0,100,1575 0/0:43,0:43:99:0,102,1530 1/1:0,70:70:99:2306,210,0 0/0:40,0:40:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/1:43,22:65:99:544,0,1266 0/0:36,0:36:99:0,108,1328 0/0:41,0:41:99:0,99,1485 0/0:41,0:41:99:0,99,1485 1/1:0,47:47:99:1570,141,0 0/0:54,0:54:99:0,120,1800 0/0:47,0:47:99:0,105,1575 0/0:43,0:43:99:0,99,1485 0/0:73,0:73:99:0,120,1800 0/0:46,0:46:99:0,99,1485 0/1:159,140:299:99:3870,0,4560 0/0:41,0:41:99:0,102,1530 0/1:34,32:66:99:894,0,952 0/1:81,44:125:99:1042,0,2426 0/0:42,0:42:99:0,102,1530 0/1:57,48:105:99:1360,0,1662 0/0:39,0:39:99:0,102,1530 0/0:22,0:22:54:0,54,810 0/0:153,0:153:99:0,120,1800 0/1:68,86:154:99:2473,0,1826 0/0:42,0:42:99:0,102,1530 0/1:23,30:53:99:854,0,639 0/0:42,0:42:93:0,93,1395 0/0:38,0:38:99:0,108,1620 0/1:76,69:145:99:1823,0,2150 0/1:24,28:52:99:798,0,650 0/0:6,0:6:18:0,18,218 0/0:39,0:39:99:0,99,1477 0/1:63,56:119:99:1411,0,1790 0/0:40,0:40:99:0,99,1485 0/0:45,0:45:99:0,114,1710 0/0:35,0:35:99:0,99,1485 0/0:45,0:45:99:0,99,1485 1 26756209 rs6697410 G T 262206.18 . AC=148;AF=0.747;AN=198;BaseQRankSum=1.29;ClippingRankSum=-5.000e-03;DB;DP=9769;FS=0.669;InbreedingCoeff=0.1234;MLEAC=149;MLEAF=0.753;MQ=53.75;MQRankSum=-8.900e-02;QD=28.36;ReadPosRankSum=0.041;SOR=0.802 GT:AD:DP:GQ:PL 1/1:0,89:89:99:3205,267,0 1/1:0,125:125:99:4626,376,0 1/1:11,133:144:59:4385,59,0 0/1:50,54:104:99:1648,0,1528 1/1:1,89:90:99:3302,231,0 1/1:0,160:160:99:5891,480,0 1/1:0,76:76:99:2802,229,0 0/1:52,36:88:99:1007,0,1559 0/1:49,51:100:99:1585,0,1501 1/1:1,237:238:99:8257,704,0 0/0:37,0:37:99:0,99,1485 1/1:0,62:62:99:2271,186,0 0/0:6,0:6:15:0,15,225 1/1:1,88:89:99:3274,228,0 0/0:41,0:41:99:0,99,1485 1/1:0,90:90:99:3285,270,0 1/1:0,76:76:99:2818,228,0 1/1:6,86:92:70:2934,70,0 0/1:66,63:129:99:2015,0,1882 1/1:0,43:43:99:1446,129,0 0/1:51,52:103:99:1566,0,1524 1/1:11,142:153:99:4709,102,0 1/1:0,69:69:99:2555,207,0 1/1:0,205:205:99:7581,616,0 1/1:0,72:72:99:2463,217,0 0/1:21,16:37:99:404,0,617 1/1:0,63:63:99:2361,190,0 0/1:43,35:78:99:1077,0,1302 0/1:30,35:65:99:1092,0,934 1/1:0,70:70:99:2561,211,0 0/1:26,36:62:99:1123,0,704 1/1:0,75:75:99:2757,225,0 1/1:0,78:78:99:2888,234,0 1/1:0,64:64:99:2249,192,0 1/1:1,118:119:99:4251,319,0 1/1:2,220:222:99:7981,591,0 1/1:0,69:69:99:2522,208,0 1/1:0,99:99:99:3664,297,0 0/1:32,49:81:99:1555,0,930 1/1:0,73:73:99:2717,220,0 0/1:19,28:47:99:914,0,511 0/1:29,37:66:99:1176,0,868 1/1:0,82:82:99:2995,246,0 1/1:0,50:50:99:1887,150,0 1/1:0,65:65:99:2450,196,0 0/1:58,57:115:99:1745,0,1697 0/1:47,51:98:99:1618,0,1373 1/1:1,191:192:99:6849,539,0 0/1:43,31:74:99:955,0,1321 1/1:0,52:52:99:1908,156,0 1/1:1,87:88:99:3141,233,0 1/1:0,64:64:99:2417,193,0 1/1:0,88:88:99:3356,265,0 1/1:0,67:67:99:2439,201,0 0/0:48,0:48:99:0,109,1665 ./.:3,0:3 1/1:5,135:140:99:4739,232,0 0/1:114,95:209:99:2726,0,3309 0/0:38,0:38:99:0,99,1485 0/1:35,35:70:99:1129,0,1073 0/0:152,0:152:65:0,65,4653 1/1:0,61:61:99:2325,183,0 0/1:64,47:111:99:1408,0,2011 1/1:0,56:56:99:2049,168,0 1/1:0,70:70:99:2564,210,0 0/1:40,37:77:99:1139,0,1256 1/1:0,75:75:99:2780,225,0 1/1:0,78:78:99:2861,235,0 0/1:41,40:81:99:1258,0,1117 0/1:33,31:64:99:951,0,981 0/1:48,41:89:99:1272,0,1415 1/1:0,65:65:99:2408,195,0 0/1:75,42:117:99:1196,0,2456 1/1:5,137:142:99:4843,262,0 1/1:5,151:156:99:5344,340,0 0/1:96,88:184:99:2673,0,2831 1/1:0,128:128:99:4761,384,0 1/1:1,344:345:99:12664,995,0 0/0:41,0:41:99:0,102,1530 0/1:50,35:85:99:1080,0,1547 0/1:81,71:152:99:2179,0,2521 0/1:55,46:101:99:1390,0,1577 1/1:0,102:102:99:3852,307,0 0/1:45,40:85:99:1226,0,1391 0/1:20,19:39:99:592,0,624 0/1:179,177:356:99:5360,0,5227 0/1:82,84:166:99:2643,0,2366 1/1:0,110:110:99:4044,331,0 1/1:0,55:55:99:2050,165,0 1/1:0,62:62:99:2295,187,0 1/1:0,94:94:99:3569,282,0 1/1:0,165:165:99:5965,495,0 1/1:0,42:42:99:1562,125,0 0/0:4,0:4:0:0,0,64 1/1:2,87:89:99:3175,248,0 1/1:4,129:133:99:4551,244,0 0/1:36,26:62:99:808,0,1124 1/1:0,64:64:99:2386,192,0 1/1:1,164:165:99:6103,457,0 0/0:45,0:45:99:0,99,1485 1 26880989 rs873151 T C 10888.84 . AC=36;AF=0.180;AN=200;BaseQRankSum=0.648;ClippingRankSum=-7.200e-02;DB;DP=1861;FS=1.747;InbreedingCoeff=0.0103;MLEAC=38;MLEAF=0.190;MQ=60.00;MQRankSum=-2.670e-01;QD=16.13;ReadPosRankSum=-3.150e-01;SOR=0.981 GT:AD:DP:GQ:PL 0/0:10,0:10:24:0,24,360 0/1:13,16:29:99:497,0,401 0/0:16,0:16:33:0,33,495 0/1:6,7:13:99:223,0,169 0/0:18,0:18:45:0,45,675 0/1:16,13:29:99:366,0,521 0/0:9,0:9:21:0,21,315 0/0:8,0:8:18:0,18,270 0/0:15,0:15:27:0,27,405 0/0:10,0:10:0:0,0,260 0/1:6,8:14:99:252,0,184 0/0:16,0:16:42:0,42,630 0/0:15,0:15:33:0,33,495 0/0:7,0:7:12:0,12,180 0/0:17,0:17:48:0,48,720 0/0:10,0:10:24:0,24,360 0/1:6,9:15:99:271,0,182 0/0:20,0:20:23:0,23,672 0/0:28,0:28:72:0,72,1080 0/1:9,19:28:99:587,0,210 0/1:12,10:22:99:324,0,382 0/0:25,0:25:60:0,60,900 0/1:14,3:17:55:55,0,470 0/0:38,0:38:93:0,93,1395 0/0:19,0:19:51:0,51,765 0/0:43,0:43:99:0,99,1437 0/1:4,12:16:99:378,0,103 0/0:7,0:7:10:0,10,205 0/0:13,0:13:27:0,27,405 0/0:12,0:12:27:0,27,405 0/0:18,0:18:42:0,42,630 1/1:0,24:24:72:874,72,0 0/0:14,0:14:33:0,33,495 1/1:0,12:12:36:438,36,0 0/0:25,0:25:60:0,60,900 0/0:35,0:35:0:0,0,916 0/0:22,0:22:57:0,57,855 0/1:5,8:13:99:249,0,153 0/0:15,0:15:39:0,39,585 0/1:15,11:26:99:335,0,486 0/0:5,0:5:15:0,15,163 0/0:8,0:8:15:0,15,225 0/1:8,8:16:99:251,0,202 0/0:11,0:11:30:0,30,450 0/0:15,0:15:36:0,36,540 0/0:28,0:28:60:0,60,900 0/1:13,10:23:99:298,0,408 0/0:26,0:26:66:0,66,990 0/1:11,9:20:99:276,0,330 0/0:12,0:12:30:0,30,450 0/1:9,6:15:99:173,0,271 0/1:9,5:14:99:147,0,288 0/1:9,7:16:99:212,0,288 0/0:16,0:16:30:0,30,450 0/0:10,0:10:27:0,27,405 0/0:1,0:1:3:0,3,33 0/0:30,0:30:48:0,48,984 0/1:12,21:33:99:700,0,335 0/0:14,0:14:33:0,33,495 0/0:17,0:17:42:0,42,630 0/0:25,0:25:60:0,60,900 0/0:15,0:15:42:0,42,630 0/0:15,0:15:39:0,39,585 0/0:13,0:13:33:0,33,495 0/0:11,0:11:30:0,30,450 0/1:11,10:21:99:323,0,320 0/1:6,7:13:99:216,0,187 0/0:20,0:20:60:0,60,709 0/0:15,0:15:0:0,0,329 0/1:12,6:18:99:162,0,377 1/1:0,18:18:54:657,54,0 0/0:13,0:13:28:0,28,432 0/0:29,0:29:84:0,84,1094 0/1:14,10:24:99:255,0,400 0/1:10,9:19:99:271,0,274 0/0:26,0:26:72:0,72,1080 0/1:8,8:16:99:255,0,246 0/0:36,0:36:99:0,99,1485 0/0:27,0:27:72:0,72,1080 0/0:9,0:9:21:0,21,315 0/0:34,0:34:81:0,81,1215 0/0:27,0:27:72:0,72,1080 0/0:23,0:23:60:0,60,900 0/0:17,0:17:39:0,39,585 0/0:5,0:5:15:0,15,184 0/1:26,31:57:99:917,0,808 0/1:17,14:31:99:410,0,487 0/0:21,0:21:25:0,25,707 0/0:16,0:16:42:0,42,630 0/0:7,0:7:0:0,0,43 0/0:19,0:19:48:0,48,720 0/1:24,10:34:99:233,0,777 0/0:8,0:8:21:0,21,315 0/0:5,0:5:15:0,15,171 0/0:23,0:23:54:0,54,810 0/1:10,8:18:99:216,0,318 0/0:12,0:12:36:0,36,454 0/0:13,0:13:0:0,0,335 1/1:0,11:11:33:394,33,0 0/0:16,0:16:39:0,39,585 1 36273501 rs114540673 G A 2521.14 . AC=7;AF=0.035;AN=200;BaseQRankSum=0.437;ClippingRankSum=0.271;DB;DP=1848;FS=0.000;InbreedingCoeff=0.4392;MLEAC=7;MLEAF=0.035;MQ=57.39;MQRankSum=1.27;QD=20.01;ReadPosRankSum=0.787;SOR=0.746 GT:AD:DP:GQ:PL 0/0:11,0:11:24:0,24,360 0/0:31,0:31:78:0,78,1170 0/1:19,9:28:99:237,0,600 0/0:22,0:22:45:0,45,675 0/0:15,0:15:24:0,24,360 0/0:30,0:30:66:0,66,990 0/0:24,0:24:54:0,54,810 0/0:13,0:13:27:0,27,405 0/0:18,0:18:48:0,48,720 0/0:20,0:20:54:0,54,810 0/0:8,0:8:24:0,24,314 0/0:11,0:11:30:0,30,450 0/0:17,0:17:48:0,48,720 0/0:10,0:10:21:0,21,315 0/0:8,0:8:21:0,21,315 0/0:13,0:13:18:0,18,270 0/0:18,0:18:30:0,30,450 0/0:16,0:16:0:0,0,437 0/0:28,0:28:60:0,60,900 0/0:41,0:41:99:0,99,1485 0/0:12,0:12:27:0,27,405 0/0:31,0:31:32:0,32,937 0/0:14,0:14:39:0,39,585 0/0:42,0:42:87:0,87,1305 0/0:8,0:8:18:0,18,270 0/0:28,0:28:69:0,69,1035 0/0:11,0:11:27:0,27,405 0/0:25,0:25:39:0,39,832 0/0:13,0:13:30:0,30,450 0/0:9,0:9:18:0,18,270 0/0:12,0:12:36:0,36,426 0/0:11,0:11:27:0,27,405 0/0:14,0:14:39:0,39,585 0/0:8,0:8:21:0,21,315 0/0:25,0:25:49:0,49,809 0/0:31,0:31:56:0,56,995 0/0:15,0:15:30:0,30,450 0/0:21,0:21:48:0,48,720 0/0:10,0:10:24:0,24,360 0/0:16,0:16:33:0,33,495 0/0:7,0:7:18:0,18,270 1/1:0,18:18:54:643,54,0 0/0:12,0:12:30:0,30,450 0/1:5,8:13:99:258,0,141 0/0:17,0:17:39:0,39,585 0/0:25,0:25:51:0,51,765 0/0:18,0:18:48:0,48,720 0/0:36,0:36:60:0,60,900 0/0:24,0:24:48:0,48,720 0/0:8,0:8:15:0,15,225 0/0:18,0:18:39:0,39,585 0/0:2,0:2:6:0,6,80 0/0:17,0:17:33:0,33,495 0/0:15,0:15:30:0,30,450 0/0:10,0:10:21:0,21,315 0/0:16,0:16:39:0,39,585 0/1:19,22:41:99:665,0,451 0/0:28,0:28:51:0,51,765 0/0:20,0:20:51:0,51,765 0/0:12,0:12:21:0,21,315 1/1:1,25:26:39:854,39,0 0/0:20,0:20:42:0,42,630 0/0:22,0:22:45:0,45,675 0/0:8,0:8:18:0,18,270 0/0:12,0:12:27:0,27,405 0/0:15,0:15:39:0,39,585 0/0:12,0:12:27:0,27,405 0/0:13,0:13:30:0,30,450 0/0:16,0:16:42:0,42,630 0/0:9,0:9:15:0,15,225 0/0:13,0:13:21:0,21,315 0/0:14,0:14:21:0,21,315 0/0:21,0:21:45:0,45,675 0/0:31,0:31:51:0,51,765 0/0:23,0:23:0:0,0,441 0/0:38,0:38:57:0,57,855 0/0:15,0:15:33:0,33,495 0/0:42,0:42:99:0,99,1485 0/0:20,0:20:36:0,36,540 0/0:18,0:18:42:0,42,617 0/0:38,0:38:72:0,72,1080 0/0:13,0:13:33:0,33,495 0/0:16,0:16:39:0,39,585 0/0:19,0:19:36:0,36,540 0/0:8,0:8:15:0,15,225 0/0:39,0:39:99:0,99,1485 0/0:31,0:31:81:0,81,1215 0/0:20,0:20:48:0,48,720 0/0:7,0:7:18:0,18,270 0/0:5,0:5:15:0,15,176 0/0:12,0:12:27:0,27,405 0/0:30,0:30:63:0,63,945 0/0:14,0:14:30:0,30,450 0/0:9,0:9:9:0,9,135 0/0:19,0:19:40:0,40,632 0/0:20,0:20:33:0,33,495 0/0:14,0:14:27:0,27,405 0/0:13,0:13:27:0,27,405 0/0:18,0:18:33:0,33,495 0/0:18,0:18:51:0,51,765 1 36273605 rs76097034 G A 235.41 . AC=1;AF=5.155e-03;AN=194;BaseQRankSum=0.354;ClippingRankSum=-5.890e-01;DB;DP=695;FS=0.000;InbreedingCoeff=-0.0623;MLEAC=1;MLEAF=5.155e-03;MQ=57.87;MQRankSum=0.589;QD=21.40;ReadPosRankSum=0.825;SOR=1.179 GT:AD:DP:GQ:PL 0/0:1,0:1:3:0,3,34 0/0:11,0:11:21:0,21,315 0/0:10,0:10:24:0,24,360 0/0:8,0:8:6:0,6,90 0/0:9,0:9:9:0,9,135 0/0:17,0:17:42:0,42,630 0/0:6,0:6:6:0,6,90 0/0:3,0:3:6:0,6,90 0/0:4,0:4:6:0,6,90 0/0:2,0:2:6:0,6,72 0/0:9,0:9:21:0,21,315 0/0:7,0:7:18:0,18,270 0/0:12,0:12:0:0,0,137 0/0:5,0:5:9:0,9,135 0/0:4,0:4:9:0,9,135 0/0:1,0:1:3:0,3,27 0/0:5,0:5:9:0,9,135 0/0:6,0:6:15:0,15,225 0/0:13,0:13:27:0,27,405 ./.:0,0:0 0/0:18,0:18:30:0,30,450 0/0:6,0:6:18:0,18,182 0/0:1,0:1:3:0,3,29 0/0:21,0:21:48:0,48,720 0/0:5,0:5:12:0,12,180 0/0:1,0:1:3:0,3,32 0/0:5,0:5:9:0,9,135 0/0:3,0:3:9:0,9,115 0/0:7,0:7:9:0,9,135 0/0:3,0:3:6:0,6,90 0/0:2,0:2:6:0,6,64 0/0:6,0:6:9:0,9,135 0/0:5,0:5:12:0,12,180 0/0:1,0:1:3:0,3,40 0/0:4,0:4:12:0,12,133 0/0:8,0:8:21:0,21,315 0/0:4,0:4:9:0,9,135 0/0:8,0:8:0:0,0,198 0/0:7,0:7:21:0,21,215 0/0:6,0:6:9:0,9,135 0/0:3,0:3:9:0,9,108 0/0:4,0:4:3:0,3,45 0/0:6,0:6:15:0,15,225 0/0:6,0:6:6:0,6,90 0/0:5,0:5:12:0,12,180 0/0:8,0:8:21:0,21,315 0/0:14,0:14:24:0,24,360 0/0:6,0:6:15:0,15,225 0/0:7,0:7:12:0,12,180 0/0:11,0:11:24:0,24,360 0/0:6,0:6:18:0,18,198 0/0:5,0:5:12:0,12,180 0/0:7,0:7:18:0,18,270 0/1:2,9:11:16:276,0,16 0/0:3,0:3:6:0,6,90 0/0:5,0:5:12:0,12,180 0/0:10,0:10:18:0,18,270 0/0:21,0:21:54:0,54,810 0/0:5,0:5:12:0,12,180 0/0:3,0:3:9:0,9,92 0/0:12,0:12:24:0,24,360 0/0:5,0:5:6:0,6,90 0/0:6,0:6:12:0,12,180 0/0:3,0:3:0:0,0,46 0/0:5,0:5:12:0,12,180 0/0:10,0:10:0:0,0,307 0/0:4,0:4:9:0,9,135 0/0:5,0:5:9:0,9,135 0/0:3,0:3:9:0,9,90 0/0:4,0:4:9:0,9,135 0/0:3,0:3:9:0,9,113 0/0:2,0:2:6:0,6,70 0/0:9,0:9:21:0,21,315 0/0:19,0:19:39:0,39,585 0/0:11,0:11:24:0,24,360 0/0:9,0:9:18:0,18,270 0/0:4,0:4:9:0,9,135 0/0:32,0:32:72:0,72,1080 0/0:6,0:6:18:0,18,204 0/0:5,0:5:9:0,9,135 0/0:13,0:13:21:0,21,315 0/0:5,0:5:15:0,15,176 0/0:10,0:10:21:0,21,315 0/0:6,0:6:9:0,9,135 0/0:2,0:2:6:0,6,55 0/0:27,0:27:60:0,60,900 0/0:9,0:9:12:0,12,180 ./.:6,0:6 0/0:3,0:3:0:0,0,31 0/0:3,0:3:9:0,9,85 0/0:6,0:6:12:0,12,180 0/0:12,0:12:27:0,27,405 0/0:5,0:5:12:0,12,180 0/0:8,0:8:21:0,21,315 0/0:4,0:4:9:0,9,135 0/0:7,0:7:15:0,15,225 0/0:7,0:7:4:0,4,212 0/0:1,0:1:3:0,3,35 0/0:4,0:4:12:0,12,135 ./.:0,0:0 1 36282399 rs72065876 CAAAAAAAAAAAAA CAAAAAAAAAAAA,C 2136.26 . AC=19,1;AF=0.097,5.102e-03;AN=196;BaseQRankSum=0.206;ClippingRankSum=0.382;DB;DP=2656;FS=0.000;InbreedingCoeff=-0.0783;MLEAC=21,1;MLEAF=0.107,5.102e-03;MQ=40.93;MQRankSum=-5.440e-01;QD=5.05;ReadPosRankSum=-9.900e-01;SOR=0.100 GT:AD:DP:GQ:PGT:PID:PL 0/1:14,3,0:17:53:0|1:36282399_CA_C:53,0,406,97,415,512 0/0:54,0,0:54:0:.:.:0,0,1686,0,1686,1686 0/0:27,0,0:27:0:.:.:0,0,774,0,774,774 0/1:15,6,0:21:99:0|1:36282399_CA_C:115,0,232,157,249,406 0/0:24,0,0:24:0:.:.:0,0,783,0,783,783 0/0:36,0,0:36:99:.:.:0,102,1530,102,1530,1530 0/0:28,0,0:28:66:.:.:0,66,990,66,990,990 0/0:28,0,0:28:0:.:.:0,0,697,0,697,697 0/0:27,0,0:27:0:.:.:0,0,633,0,633,633 0/1:46,9,0:55:74:0|1:36282399_CA_C:74,0,980,210,1006,1216 0/1:12,2,0:14:24:0|1:36282399_CA_C:24,0,330,60,336,396 0/0:21,0,0:21:0:.:.:0,0,441,0,441,441 0/0:4,0,0:4:9:.:.:0,9,135,9,135,135 0/0:19,0,0:19:23:.:.:0,23,650,23,650,650 0/0:10,0,0:10:0:.:.:0,0,231,0,231,231 0/0:27,0,0:27:0:.:.:0,0,619,0,619,619 0/1:8,3,0:11:26:0|1:36282399_CA_C:26,0,172,55,185,239 0/0:28,0,0:28:53:.:.:0,53,1016,53,1016,1016 0/0:30,0,0:30:0:.:.:0,0,823,0,823,823 0/0:15,0,0:15:0:.:.:0,0,361,0,361,361 0/0:13,2,0:15:2:0|1:36282399_CA_C:0,2,294,38,300,336 0/1:15,9,0:24:99:0|1:36282399_CA_C:201,0,356,246,386,632 0/0:19,0,0:19:10:.:.:0,10,619,10,619,619 0/1:22,9,0:31:99:0|1:36282399_CA_C:208,0,499,272,528,800 0/0:20,0,0:20:0:.:.:0,0,393,0,393,393 0/1:8,5,0:13:99:0|1:36282399_CA_C:99,0,142,124,157,281 0/0:23,0,0:23:27:.:.:0,27,820,27,820,820 0/1:9,2,0:11:46:0|1:36282399_CA_C:46,0,147,71,153,224 0/0:24,0,0:24:0:.:.:0,0,652,0,652,652 0/0:16,0,0:16:0:.:.:0,0,433,0,433,433 0/0:6,0,0:7:17:0|1:36282399_CAAA_C:0,17,162,17,162,162 0/1:5,3,0:8:48:0|1:36282399_CA_C:48,0,83,62,94,156 0/0:19,0,0:19:0:.:.:0,0,447,0,447,447 0/0:11,0,0:11:0:.:.:0,0,342,0,342,342 0/1:10,3,0:13:84:0|1:36282399_CA_C:84,0,237,114,246,360 0/0:20,3,0:23:11:.:.:0,11,433,61,441,491 0/0:28,0,0:28:12:.:.:0,12,949,12,949,949 0/0:27,0,0:27:0:.:.:0,0,809,0,809,809 0/0:18,0,0:18:13:.:.:0,13,613,13,613,613 0/0:19,0,0:19:36:.:.:0,36,540,36,540,540 0/1:8,2,0:10:27:0|1:36282399_CA_C:27,0,161,53,169,221 0/0:17,0,0:17:0:.:.:0,0,416,0,416,416 0/0:28,0,0:28:0:.:.:0,0,763,0,763,763 0/0:17,0,0:17:0:.:.:0,0,428,0,428,428 0/0:15,0,0:15:27:.:.:0,27,405,27,405,405 0/0:50,0,0:50:0:.:.:0,0,1446,0,1446,1446 0/0:31,0,0:31:0:.:.:0,0,879,0,879,879 0/0:70,0,0:70:62:.:.:0,62,2264,62,2264,2264 0/0:26,0,0:26:0:.:.:0,0,753,0,753,753 0/0:14,0,0:14:0:.:.:0,0,15,0,15,15 0/1:5,3,0:8:72:0|1:36282399_CA_C:72,0,107,87,116,203 0/0:16,0,0:16:6:.:.:0,6,548,6,548,548 0/0:14,0,0:14:0:.:.:0,0,298,0,298,298 0/2:11,0,13:24:99:0|1:36282399_CAAAAAAAAAAAAA_C:449,483,949,0,466,427 0/0:23,0,0:23:0:.:.:0,0,593,0,593,593 ./.:0,0,0:0 0/0:50,0,0:50:0:.:.:0,0,1259,0,1259,1259 0/1:14,6,0:20:85:.:.:85,0,329,127,347,474 0/1:3,5,0:8:48:0|1:36282399_CA_C:130,0,48,138,63,201 0/0:21,0,0:21:0:.:.:0,0,450,0,450,450 0/0:39,0,0:39:69:.:.:0,69,1035,69,1035,1035 0/0:26,0,0:26:4:.:.:0,4,854,4,854,854 0/0:25,0,0:27:75:0|1:36282399_CAA_C:0,75,943,75,943,943 0/0:15,0,0:15:0:.:.:0,0,351,0,351,351 0/0:23,0,0:23:0:.:.:0,0,599,0,599,599 0/0:25,0,0:25:36:.:.:0,36,888,36,888,888 0/0:25,0,0:25:0:.:.:0,0,589,0,589,589 0/0:10,1,0:11:0:0|1:36282399_CA_C:0,0,245,30,248,278 0/0:20,0,0:20:0:.:.:0,0,573,0,573,573 0/0:11,0,0:11:0:.:.:0,0,107,0,107,107 0/0:39,0,0:39:0:.:.:0,0,996,0,996,996 0/0:18,0,0:18:0:.:.:0,0,521,0,521,521 0/0:30,0,0:30:0:.:.:0,0,876,0,876,876 0/0:48,0,0:48:0:.:.:0,0,1396,0,1396,1396 0/0:2,0,0:2:7:.:.:0,7,87,7,87,87 0/0:69,0,0:69:0:.:.:0,0,2097,0,2097,2097 0/0:27,0,0:27:0:.:.:0,0,578,0,578,578 0/1:31,8,0:39:75:0|1:36282399_CA_C:75,0,668,166,692,858 0/0:46,0,0:46:0:.:.:0,0,1231,0,1231,1231 0/0:25,0,0:25:0:.:.:0,0,861,0,861,861 0/0:27,0,0:27:0:.:.:0,0,749,0,749,749 0/0:28,0,0:28:0:.:.:0,0,434,0,434,434 0/0:37,0,0:37:0:.:.:0,0,833,0,833,833 0/0:35,0,0:35:54:.:.:0,54,810,54,810,810 0/0:8,0,0:8:0:.:.:0,0,69,0,69,69 0/1:35,11,0:55:99:.:.:133,0,917,199,891,1085 0/1:17,3,0:20:18:0|1:36282399_CA_C:18,0,318,67,328,395 ./.:12,0,0:12 0/0:12,0,0:12:21:.:.:0,21,315,21,315,315 0/0:18,0,0:18:0:.:.:0,0,435,0,435,435 0/0:30,0,0:30:0:.:.:0,0,799,0,799,799 0/1:24,6,0:30:29:0|1:36282399_CA_C:29,0,480,101,503,604 0/0:14,0,0:14:6:.:.:0,6,446,6,446,446 0/0:1,0,0:1:3:.:.:0,3,32,3,32,32 0/0:39,0,0:39:0:.:.:0,0,1062,0,1062,1062 0/0:28,0,0:28:0:.:.:0,0,749,0,749,749 0/0:19,0,0:19:0:.:.:0,0,420,0,420,420 0/0:6,0,0:7:18:0|1:36282399_CAA_C:0,18,203,18,203,203 0/0:12,0,0:13:38:0|1:36282399_CAA_C:0,38,411,38,411,411 0/0:16,0,0:16:0:.:.:0,0,366,0,366,366 1 36282417 rs2791960 A G 37260.98 . AC=82;AF=0.451;AN=182;BaseQRankSum=1.32;ClippingRankSum=0.065;DB;DP=3404;FS=0.000;InbreedingCoeff=-0.8308;MLEAC=86;MLEAF=0.473;MQ=46.22;MQRankSum=2.83;QD=13.23;ReadPosRankSum=1.73;SOR=0.181 GT:AD:DP:GQ:PGT:PID:PL 0/1:18,8:26:99:0|1:36282399_CA_C:168,0,484 0/1:22,23:45:99:.:.:380,0,285 0/1:19,18:37:99:0|1:36282417_A_G:408,0,334 0/1:14,28:42:99:0|1:36282399_CA_C:717,0,173 0/1:10,25:35:67:0|1:36282417_A_G:605,0,67 0/1:33,24:57:99:0|1:36282417_A_G:479,0,889 0/1:14,16:30:99:0|1:36282417_A_G:307,0,296 0/1:7,11:18:86:.:.:233,0,86 0/1:8,14:22:76:.:.:377,0,76 0/1:47,13:60:99:0|1:36282399_CA_C:163,0,1011 0/1:12,15:27:99:0|1:36282399_CA_C:436,0,291 ./.:37,0:37 ./.:0,0:0 0/1:7,21:28:50:.:.:371,0,50 0/1:4,16:20:19:.:.:424,0,19 0/1:14,21:35:99:.:.:508,0,193 0/1:11,19:30:99:0|1:36282399_CA_C:442,0,175 1/1:9,31:40:37:.:.:782,37,0 0/1:15,40:55:19:.:.:1059,0,19 0/1:4,7:11:18:.:.:124,0,18 0/1:15,13:28:99:0|1:36282399_CA_C:298,0,290 0/1:16,40:56:99:0|1:36282399_CA_C:1019,0,306 ./.:29,0:29 0/1:23,44:67:99:0|1:36282399_CA_C:1115,0,446 0/1:8,10:18:84:.:.:244,0,84 0/1:11,21:32:99:0|1:36282399_CA_C:497,0,131 0/1:15,10:25:99:0|1:36282417_A_G:161,0,452 0/1:9,16:25:99:0|1:36282399_CA_C:357,0,109 0/1:13,6:19:99:.:.:124,0,141 0/1:12,9:21:99:0|1:36282417_A_G:202,0,238 0/1:14,7:21:99:0|1:36282399_CAAA_C:185,0,371 0/1:12,13:25:99:0|1:36282399_CA_C:268,0,116 ./.:32,0:32 0/0:13,0:13:0:.:.:0,0,27 0/1:11,25:36:99:0|1:36282399_CA_C:610,0,209 0/1:16,43:59:81:.:.:954,0,81 0/1:16,19:35:84:.:.:429,0,84 0/1:12,18:30:85:.:.:335,0,85 0/1:19,11:30:99:.:.:258,0,245 0/0:29,0:29:0:.:.:0,0,97 0/1:11,18:29:99:0|1:36282399_CA_C:421,0,133 0/0:31,0:31:45:.:.:0,45,675 0/1:11,9:20:99:0|1:36282417_A_G:208,0,149 0/0:21,0:21:0:.:.:0,0,396 0/1:11,4:15:65:0|1:36282417_A_G:65,0,305 0/1:24,24:48:99:.:.:456,0,361 0/1:7,22:29:21:.:.:574,0,21 0/1:18,37:55:99:.:.:701,0,170 0/0:43,0:43:0:.:.:0,0,991 0/1:9,9:18:99:0|1:36282417_A_G:228,0,177 0/1:8,13:21:93:0|1:36282399_CA_C:350,0,93 0/1:10,18:28:81:.:.:464,0,81 0/1:7,13:20:78:0|1:36282417_A_G:312,0,78 0/0:33,0:33:54:.:.:0,54,810 0/1:10,6:16:61:.:.:61,0,124 ./.:0,0:0 0/1:39,17:56:99:0|1:36282417_A_G:305,0,1047 0/1:13,62:75:99:.:.:1608,0,109 0/1:4,21:25:28:0|1:36282399_CA_C:497,0,28 0/1:9,15:24:99:.:.:356,0,131 0/0:66,0:66:72:.:.:0,72,1080 0/1:13,21:34:99:.:.:483,0,128 0/1:27,11:38:99:0|1:36282399_CAA_C:204,0,959 0/1:9,8:17:98:.:.:160,0,98 0/1:6,21:27:38:.:.:427,0,38 0/1:11,25:36:95:.:.:591,0,95 0/1:7,13:20:99:0|1:36282417_A_G:304,0,108 0/1:12,11:23:99:0|1:36282399_CA_C:231,0,239 0/1:11,19:30:99:.:.:490,0,109 ./.:24,0:24 0/1:26,10:36:99:0|1:36282417_A_G:214,0,756 0/1:10,15:25:81:.:.:337,0,81 0/1:18,21:39:99:.:.:604,0,148 0/1:23,34:57:99:0|1:36282417_A_G:797,0,284 0/1:28,16:44:99:.:.:283,0,648 0/1:26,19:45:99:.:.:327,0,578 0/1:18,21:39:99:.:.:554,0,111 0/1:27,71:98:99:0|1:36282399_CA_C:1822,0,176 0/1:17,27:44:99:.:.:676,0,113 0/1:9,14:23:99:.:.:267,0,103 ./.:48,0:48 0/1:10,23:33:36:.:.:578,0,36 0/1:22,9:31:99:0|1:36282417_A_G:149,0,657 0/1:24,7:31:99:0|1:36282417_A_G:106,0,797 0/0:13,0:13:0:.:.:0,0,26 0/1:31,83:114:99:.:.:2257,0,353 0/1:16,32:48:99:0|1:36282399_CA_C:813,0,276 0/1:12,8:20:99:.:.:185,0,266 0/0:12,0:12:0:.:.:0,0,198 0/1:7,14:21:35:.:.:320,0,35 0/1:14,10:24:99:0|1:36282417_A_G:218,0,399 0/1:28,35:63:99:0|1:36282399_CA_C:659,0,467 0/0:33,0:33:45:.:.:0,45,675 ./.:4,0:4 0/1:13,24:37:29:.:.:666,0,29 ./.:51,0:51 0/1:9,18:27:66:.:.:443,0,66 0/1:8,9:17:99:0|1:36282399_CAA_C:261,0,167 0/1:11,8:19:99:0|1:36282399_CAA_C:192,0,408 0/1:20,13:33:99:.:.:285,0,410 1 36282419 . A AAAAG 1554.50 . AC=7;AF=0.036;AN=196;BaseQRankSum=1.11;ClippingRankSum=0.936;DP=4453;FS=0.000;InbreedingCoeff=0.5045;MLEAC=7;MLEAF=0.036;MQ=46.17;MQRankSum=1.11;QD=13.29;ReadPosRankSum=-2.097e+00;SOR=0.613 GT:AD:DP:GQ:PGT:PID:PL 0/0:36,0:36:45:.:.:0,45,675 0/0:62,0:62:96:.:.:0,96,1440 0/1:19,8:27:99:1|0:36282417_A_G:242,0,668 0/0:58,0:58:93:.:.:0,93,1395 0/0:52,0:52:99:.:.:0,99,1485 0/0:76,0:76:99:.:.:0,120,1800 0/0:37,0:37:51:.:.:0,51,765 0/0:33,0:33:60:.:.:0,60,900 0/0:38,0:38:72:.:.:0,72,1080 0/0:73,0:73:63:.:.:0,63,945 0/0:43,0:43:72:.:.:0,72,1080 0/0:38,0:38:69:.:.:0,69,1035 ./.:0,0:0 0/0:38,0:38:78:.:.:0,78,1170 0/0:27,0:27:49:.:.:0,49,885 0/0:48,0:48:99:.:.:0,102,1530 0/0:35,0:35:72:.:.:0,72,1080 0/0:53,0:53:99:.:.:0,118,1800 0/0:68,0:68:99:.:.:0,120,1800 0/0:18,0:18:35:.:.:0,35,550 0/0:41,0:41:75:.:.:0,75,1125 0/0:76,0:76:99:.:.:0,120,1800 0/0:35,0:35:69:.:.:0,69,1035 0/0:98,0:98:99:.:.:0,120,1800 0/0:26,0:26:45:.:.:0,45,675 0/0:46,0:46:99:.:.:0,102,1530 0/0:32,0:32:45:.:.:0,45,675 0/0:30,0:30:54:.:.:0,54,810 0/0:34,0:34:63:.:.:0,63,1035 0/0:34,0:34:60:.:.:0,60,900 0/0:32,0:32:48:.:.:0,48,720 0/0:39,0:39:63:.:.:0,63,945 0/0:33,0:33:81:.:.:0,81,1215 0/0:14,0:14:24:.:.:0,24,360 0/0:56,0:56:99:.:.:0,100,1797 0/0:87,0:87:99:.:.:0,120,1800 0/0:48,0:48:87:.:.:0,87,1305 0/0:49,0:49:84:.:.:0,84,1260 0/0:38,0:38:57:.:.:0,57,855 0/0:29,0:29:48:.:.:0,48,720 0/0:41,0:41:72:.:.:0,72,1080 1/1:0,6:6:29:.:.:304,29,0 0/0:37,0:37:51:.:.:0,51,765 0/0:19,0:19:0:.:.:0,0,423 0/0:25,0:25:27:.:.:0,27,405 0/0:66,0:66:90:.:.:0,90,1350 0/0:47,0:47:99:.:.:0,99,1485 0/0:83,0:83:99:.:.:0,120,1800 0/0:41,0:41:42:.:.:0,42,630 0/0:31,0:31:48:.:.:0,48,720 0/0:31,0:31:63:.:.:0,63,945 0/0:32,0:32:72:.:.:0,72,1080 0/0:31,0:31:63:.:.:0,63,945 0/0:29,0:29:57:.:.:0,57,855 0/0:21,0:21:30:.:.:0,30,450 ./.:0,0:0 0/1:18,20:38:99:1|0:36282417_A_G:547,0,605 0/0:118,0:118:99:.:.:0,120,1800 0/0:39,0:39:87:.:.:0,87,1305 0/0:41,0:41:84:.:.:0,84,1260 1/1:0,14:14:40:.:.:451,40,0 0/0:48,0:48:90:.:.:0,90,1350 0/0:53,0:53:66:.:.:0,66,990 0/0:23,0:23:30:.:.:0,30,450 0/0:41,0:41:81:.:.:0,81,1215 0/0:42,0:42:84:.:.:0,84,1260 0/0:35,0:35:54:.:.:0,54,810 0/0:38,0:38:54:.:.:0,54,810 0/0:36,0:36:81:.:.:0,81,1215 0/0:23,0:23:51:.:.:0,51,765 0/0:56,0:56:75:.:.:0,75,1125 0/0:32,0:32:54:.:.:0,54,810 0/0:51,0:51:93:.:.:0,93,1395 0/0:65,0:65:99:.:.:0,120,1800 0/1:24,8:32:99:.:.:146,0,683 0/0:81,0:81:99:.:.:0,99,1485 0/0:46,0:46:93:.:.:0,93,1395 0/0:139,0:139:99:.:.:0,120,1800 0/0:67,0:67:99:.:.:0,120,1800 0/0:40,0:40:54:.:.:0,54,810 0/0:47,0:47:99:.:.:0,99,1485 0/0:45,0:45:72:.:.:0,72,1080 0/0:58,0:58:84:.:.:0,84,1260 0/0:49,0:49:57:.:.:0,57,855 0/0:14,0:14:21:.:.:0,21,315 0/0:139,0:139:99:.:.:0,120,1800 0/0:64,0:64:99:.:.:0,120,1800 0/0:41,0:41:99:.:.:0,117,1755 0/0:12,0:12:24:.:.:0,24,360 0/0:28,0:28:63:.:.:0,63,852 0/0:39,0:39:54:.:.:0,54,810 0/0:87,0:87:99:.:.:0,120,1800 0/0:34,0:34:51:.:.:0,51,765 0/0:4,0:4:9:.:.:0,9,135 0/0:49,0:49:90:.:.:0,90,1350 0/0:54,0:54:99:.:.:0,99,1485 0/0:45,0:45:90:.:.:0,90,1350 0/0:21,0:21:42:.:.:0,42,630 0/0:36,0:36:54:.:.:0,54,810 0/0:41,0:41:90:.:.:0,90,1284 1 36282422 . AGAAAGAAAGAAAG A,AAAAGAAAGAAAG 1299.90 . AC=3,2;AF=0.015,0.010;AN=198;BaseQRankSum=-2.580e+00;ClippingRankSum=0.493;DP=4312;FS=0.000;InbreedingCoeff=-0.0210;MLEAC=3,2;MLEAF=0.015,0.010;MQ=50.54;MQRankSum=-3.217e+00;QD=5.94;ReadPosRankSum=-6.610e-01;SOR=0.195 GT:AD:DP:GQ:PGT:PID:PL 0/0:38,0,0:42:99:1|0:36282399_CA_C:0,114,1779,114,1779,1779 0/0:45,0,0:45:87:.:.:0,87,1305,87,1305,1305 0/0:61,0,0:61:99:.:.:0,120,1800,120,1800,1800 0/0:48,0,0:48:93:.:.:0,93,1395,93,1395,1395 0/0:52,0,0:52:99:.:.:0,99,1485,99,1485,1485 0/1:52,11,0:63:99:1|0:36282417_A_G:141,0,2436,308,2469,2777 0/0:30,0,0:35:89:1|0:36282417_A_G:0,89,1187,89,1187,1187 0/0:33,0,0:33:60:.:.:0,60,900,60,900,900 0/0:37,0,0:37:42:.:.:0,42,1078,42,1078,1078 0/0:57,0,0:57:20:.:.:0,20,1415,20,1415,1415 0/0:43,0,0:43:72:.:.:0,72,1080,72,1080,1080 0/0:33,0,0:33:72:.:.:0,72,1080,72,1080,1080 ./.:0,0,0:0 0/0:36,0,0:36:83:.:.:0,83,1246,83,1246,1246 0/0:23,0,0:23:60:.:.:0,60,900,60,900,900 0/0:48,0,0:48:99:.:.:0,99,1485,99,1485,1485 0/0:32,0,0:32:38:.:.:0,38,954,38,954,954 0/0:53,0,0:53:99:.:.:0,118,1800,118,1800,1800 0/0:68,0,0:68:99:.:.:0,120,1800,120,1800,1800 0/0:18,0,0:18:42:.:.:0,42,630,42,630,630 0/0:41,0,0:41:75:.:.:0,75,1125,75,1125,1125 0/0:76,0,0:76:99:.:.:0,120,1800,120,1800,1800 0/0:36,0,0:36:78:.:.:0,78,1170,78,1170,1170 0/0:98,0,0:98:99:.:.:0,120,1800,120,1800,1800 0/0:21,0,0:21:17:.:.:0,17,592,17,592,592 0/0:46,0,0:46:99:.:.:0,102,1530,102,1530,1530 0/0:23,0,0:28:71:1|0:36282417_A_G:0,71,1061,71,1061,1061 0/0:29,0,0:29:60:.:.:0,60,900,60,900,900 0/0:30,0,0:30:52:.:.:0,52,915,52,915,915 0/0:39,0,0:39:72:.:.:0,72,1080,72,1080,1080 0/0:24,0,0:24:42:.:.:0,42,630,42,630,630 0/0:35,0,0:35:72:.:.:0,72,1080,72,1080,1080 0/0:33,0,0:33:81:.:.:0,81,1215,81,1215,1215 0/0:11,0,0:11:18:.:.:0,18,270,18,270,270 0/0:56,0,0:56:99:.:.:0,100,1797,100,1797,1797 0/0:80,0,0:80:28:.:.:0,28,2220,28,2220,2220 0/0:41,0,0:41:88:.:.:0,88,1298,88,1298,1298 0/0:49,0,0:49:84:.:.:0,84,1260,84,1260,1260 0/0:31,0,0:31:0:.:.:0,0,439,0,439,439 0/0:29,0,0:29:48:.:.:0,48,720,48,720,720 0/0:37,0,0:37:75:.:.:0,75,1125,75,1125,1125 0/0:24,0,0:24:45:.:.:0,45,675,45,675,675 0/0:30,0,0:30:51:.:.:0,51,765,51,765,765 0/0:21,0,0:21:33:.:.:0,33,495,33,495,495 0/0:22,0,0:27:66:1|0:36282417_A_G:0,66,1026,66,1026,1026 0/0:55,0,0:55:15:.:.:0,15,1560,15,1560,1560 0/0:41,0,0:41:90:.:.:0,90,1350,90,1350,1350 0/0:83,0,0:83:99:.:.:0,120,1800,120,1800,1800 0/0:34,0,0:34:39:.:.:0,39,585,39,585,585 0/0:30,0,0:30:51:.:.:0,51,765,51,765,765 0/0:34,0,0:34:78:.:.:0,78,1170,78,1170,1170 0/0:32,0,0:32:72:.:.:0,72,1080,72,1080,1080 0/0:35,0,0:35:78:.:.:0,78,1170,78,1170,1170 0/0:33,0,0:34:99:1|0:36282399_CAAAAAAAAAAAAA_C:0,99,1528,99,1528,1528 0/0:17,0,0:17:16:.:.:0,16,500,16,500,500 0/0:1,0,0:1:3:.:.:0,3,32,3,32,32 0/0:65,0,0:65:99:.:.:0,120,1800,120,1800,1800 0/0:118,0,0:118:99:.:.:0,120,1800,120,1800,1800 0/0:40,0,0:40:93:.:.:0,93,1395,93,1395,1395 0/0:39,0,0:39:90:.:.:0,90,1350,90,1350,1350 0/0:52,0,0:52:84:.:.:0,84,1260,84,1260,1260 0/0:49,0,0:49:99:.:.:0,99,1485,99,1485,1485 0/2:20,0,15:35:99:1|0:36282399_CAA_C:429,498,1602,0,1104,1059 0/0:20,0,0:20:36:.:.:0,36,540,36,540,540 0/0:37,0,0:37:76:.:.:0,76,1146,76,1146,1146 0/0:39,0,0:39:82:.:.:0,82,1274,82,1274,1274 0/0:33,0,0:33:51:.:.:0,51,765,51,765,765 0/0:37,0,0:37:63:.:.:0,63,945,63,945,945 0/0:33,0,0:33:72:.:.:0,72,1080,72,1080,1080 0/0:22,0,0:22:57:.:.:0,57,855,57,855,855 0/0:52,0,0:52:87:.:.:0,87,1538,87,1538,1538 0/0:31,0,0:31:60:.:.:0,60,900,60,900,900 0/0:50,0,0:50:77:.:.:0,77,1618,77,1618,1618 0/0:65,0,0:65:99:.:.:0,120,1800,120,1800,1800 0/0:59,0,0:59:0:.:.:0,0,1116,0,1116,1116 0/0:67,9,0:76:9:0|1:36282422_AGAAAGAAAGAAAG_A:0,9,2859,210,2884,3084 0/0:46,0,0:46:99:.:.:0,102,1509,102,1509,1509 0/0:139,0,0:139:99:.:.:0,120,1800,120,1800,1800 0/0:67,0,0:67:99:.:.:0,120,1800,120,1800,1800 0/0:35,0,0:35:55:.:.:0,55,1107,55,1107,1107 0/0:47,0,0:47:99:.:.:0,99,1485,99,1485,1485 0/0:45,0,0:45:81:.:.:0,81,1215,81,1215,1215 0/1:35,13,0:48:99:1|0:36282417_A_G:199,0,1644,318,1683,2002 0/2:14,0,14:28:99:1|0:36282417_A_G:414,465,1255,0,790,748 0/0:12,0,0:12:15:.:.:0,15,225,15,225,225 0/0:139,0,0:139:99:.:.:0,120,1800,120,1800,1800 0/0:64,0,0:64:99:.:.:0,120,1800,120,1800,1800 0/0:41,0,0:41:99:.:.:0,117,1755,117,1755,1755 0/0:17,0,0:17:33:.:.:0,33,495,33,495,495 0/0:28,0,0:28:63:.:.:0,63,852,63,852,852 0/1:38,7,0:45:99:1|0:36282417_A_G:108,0,1533,221,1553,1774 0/0:87,0,0:87:99:.:.:0,120,1800,120,1800,1800 0/0:27,0,0:27:45:.:.:0,45,675,45,675,675 0/0:4,0,0:4:9:.:.:0,9,135,9,135,135 0/0:45,0,0:45:66:.:.:0,66,1413,66,1413,1413 0/0:46,0,0:46:99:.:.:0,99,1485,99,1485,1485 0/0:45,0,0:45:99:.:.:0,102,1530,102,1530,1530 0/0:21,0,0:21:45:.:.:0,45,675,45,675,675 0/0:24,0,0:26:72:1|0:36282399_CAA_C:0,72,1079,72,1079,1079 0/0:41,0,0:41:96:.:.:0,96,1252,96,1252,1252 1 36282423 . G A,* 1865.44 . AC=4,8;AF=0.020,0.041;AN=196;BaseQRankSum=-1.525e+00;ClippingRankSum=0.150;DP=3862;FS=0.000;InbreedingCoeff=0.0015;MLEAC=4,11;MLEAF=0.020,0.056;MQ=49.98;MQRankSum=-3.050e+00;QD=4.54;ReadPosRankSum=-1.350e+00;SOR=0.207 GT:AD:DP:GQ:PGT:PID:PL 0/0:38,0,4:42:47:1|0:36282399_CA_C:0,114,1779,47,1711,1698 0/0:39,0,0:39:0:.:.:0,0,693,0,693,693 0/0:56,0,0:56:0:.:.:0,0,1261,0,1261,1261 0/0:47,0,0:47:0:.:.:0,0,708,0,708,708 0/0:31,6,0:37:61:1|0:36282417_A_G:0,61,1162,95,1173,1207 0/2:52,0,11:63:99:1|0:36282417_A_G:141,308,2777,0,2469,2436 0/2:30,0,5:35:39:1|0:36282417_A_G:39,128,1226,0,1098,1081 0/0:32,0,0:32:0:.:.:0,0,586,0,586,586 0/0:32,0,0:32:0:.:.:0,0,406,0,406,406 ./.:46,0,0:46 0/1:22,3,0:25:5:1|0:36282399_CA_C:5,0,831,76,840,916 0/0:27,0,0:27:0:.:.:0,0,648,0,648,648 ./.:0,0,0:0 0/0:34,0,0:34:0:.:.:0,0,740,0,740,740 0/0:20,0,0:20:41:.:.:0,41,694,41,694,694 0/0:43,0,0:43:0:.:.:0,0,687,0,687,687 0/0:25,0,0:25:0:.:.:0,0,498,0,498,498 0/0:54,0,0:54:0:.:.:0,0,1390,0,1390,1390 0/0:67,0,0:67:0:.:.:0,0,1699,0,1699,1699 0/0:16,0,0:16:27:.:.:0,27,425,27,425,425 0/0:33,0,0:33:0:.:.:0,0,389,0,389,389 0/0:50,5,0:55:84:1|0:36282399_CA_C:0,84,1899,154,1915,1985 0/0:33,0,0:33:0:.:.:0,0,511,0,511,511 0/0:58,7,0:65:99:1|0:36282399_CA_C:0,108,2635,203,2652,2747 0/0:20,0,0:20:0:.:.:0,0,293,0,293,293 0/0:45,0,0:45:0:.:.:0,0,714,0,714,714 0/2:23,0,5:28:82:1|0:36282417_A_G:82,153,1143,0,990,974 0/0:28,0,0:28:0:.:.:0,0,589,0,589,589 0/0:22,0,0:22:0:.:.:0,0,369,0,369,369 0/0:23,0,0:23:66:1|0:36282417_A_G:0,66,834,69,837,841 0/0:24,0,0:24:0:.:.:0,0,272,0,272,272 0/0:29,0,0:29:0:.:.:0,0,487,0,487,487 0/0:28,0,0:28:0:.:.:0,0,609,0,609,609 0/0:10,0,0:10:0:.:.:0,0,194,0,194,194 0/0:56,0,0:56:0:.:.:0,0,1120,0,1120,1120 0/0:82,0,0:82:0:.:.:0,0,1315,0,1315,1315 0/0:36,0,0:36:0:.:.:0,0,612,0,612,612 0/0:42,0,0:42:0:.:.:0,0,472,0,472,472 0/0:31,0,0:31:0:.:.:0,0,439,0,439,439 0/1:5,7,0:12:29:.:.:29,0,113,43,131,174 0/0:34,0,0:34:0:.:.:0,0,781,0,781,781 0/0:25,0,0:25:0:.:.:0,0,414,0,414,414 0/0:15,4,0:19:10:1|0:36282417_A_G:0,10,525,45,534,569 0/0:22,0,0:22:0:.:.:0,0,269,0,269,269 0/2:22,0,5:27:17:1|0:36282417_A_G:17,83,1043,0,959,945 0/0:32,14,0:46:6:0|1:36282423_G_A:0,6,1335,108,1362,1465 0/0:43,0,0:43:0:.:.:0,0,800,0,800,800 0/0:65,0,0:65:0:.:.:0,0,1177,0,1177,1177 0/1:6,25,0:31:99:0|1:36282423_G_A:175,0,302,192,352,544 0/0:15,4,0:19:36:1|0:36282417_A_G:0,36,560,45,566,574 0/0:32,0,0:32:0:.:.:0,0,634,0,634,634 0/0:26,0,0:26:0:.:.:0,0,544,0,544,544 0/0:23,4,0:27:49:1|0:36282417_A_G:0,49,824,68,832,851 0/0:33,0,1:34:95:1|0:36282399_CAAAAAAAAAAAAA_C:0,99,1528,95,1525,1522 0/0:12,0,0:12:0:.:.:0,0,68,0,68,68 0/0:1,0,0:1:3:.:.:0,3,32,3,32,32 0/0:65,0,0:65:0:.:.:0,0,1579,0,1579,1579 0/0:111,0,0:111:0:.:.:0,0,2392,0,2392,2392 0/0:38,0,0:38:0:.:.:0,0,741,0,741,741 0/0:34,0,0:34:0:.:.:0,0,722,0,722,722 0/0:48,0,0:48:0:.:.:0,0,532,0,532,532 0/0:44,0,0:44:0:.:.:0,0,958,0,958,958 0/2:20,0,15:35:99:1|0:36282399_CAA_C:429,498,1602,0,1104,1059 0/0:19,0,0:19:0:.:.:0,0,380,0,380,380 0/0:32,0,0:32:0:.:.:0,0,608,0,608,608 0/0:36,0,0:36:11:.:.:0,11,930,11,930,930 0/0:16,3,0:19:2:1|0:36282417_A_G:0,2,749,63,756,816 0/0:22,4,0:26:25:1|0:36282399_CA_C:0,25,771,66,782,822 0/0:34,0,0:34:0:.:.:0,0,811,0,811,811 0/0:22,0,0:22:16:.:.:0,16,587,16,587,587 0/1:22,12,0:34:99:1|0:36282417_A_G:262,0,1105,336,1142,1478 0/0:31,0,0:31:0:.:.:0,0,698,0,698,698 0/0:43,0,0:43:0:.:.:0,0,779,0,779,779 0/0:45,5,0:50:82:1|0:36282417_A_G:0,82,2008,155,2018,2090 0/0:33,0,0:33:99:.:.:0,99,1287,99,1287,1288 0/0:67,0,9:76:9:0|1:36282422_AGAAAGAAAGAAAG_A:0,210,3084,9,2884,2859 0/0:34,0,0:34:0:.:.:0,0,881,0,881,881 0/0:126,0,0:126:0:.:.:0,0,2384,0,2384,2384 0/0:62,0,0:62:0:.:.:0,0,1243,0,1243,1243 0/0:37,0,0:37:0:.:.:0,0,450,0,450,450 0/0:44,0,0:44:0:.:.:0,0,896,0,896,896 0/0:41,0,0:41:0:.:.:0,0,681,0,681,681 0/2:35,0,13:48:99:1|0:36282417_A_G:199,318,2002,0,1683,1644 0/2:14,0,14:28:99:1|0:36282417_A_G:414,465,1255,0,790,748 0/0:11,0,0:11:0:.:.:0,0,92,0,92,92 0/0:127,0,0:127:0:.:.:0,0,2593,0,2593,2593 0/0:56,0,0:56:0:.:.:0,0,1193,0,1193,1193 0/0:47,0,0:47:79:.:.:0,79,1481,79,1481,1481 0/0:15,0,0:15:0:.:.:0,0,322,0,322,322 0/0:27,0,0:27:0:.:.:0,0,588,0,588,588 0/2:38,0,7:45:99:1|0:36282417_A_G:108,221,1774,0,1553,1533 0/0:73,0,0:73:0:.:.:0,0,1555,0,1555,1555 0/0:28,0,0:28:0:.:.:0,0,376,0,376,376 0/0:3,0,0:3:9:.:.:0,9,66,9,66,66 0/0:42,0,0:42:0:.:.:0,0,838,0,838,838 0/0:44,0,0:44:0:.:.:0,0,881,0,881,881 0/0:43,0,0:43:0:.:.:0,0,825,0,825,825 0/0:17,0,0:17:7:.:.:0,7,486,7,486,486 0/0:24,0,2:26:43:1|0:36282399_CAA_C:0,72,1079,43,1050,1043 0/0:43,0,0:43:0:.:.:0,0,942,0,942,942 1 36282426 . AG A,* 1287.64 . AC=2,6;AF=0.010,0.030;AN=198;BaseQRankSum=-3.951e+00;ClippingRankSum=-5.600e-01;DP=4401;FS=0.000;InbreedingCoeff=-0.0391;MLEAC=2,6;MLEAF=0.010,0.030;MQ=47.80;MQRankSum=-3.283e+00;QD=4.13;ReadPosRankSum=1.11;SOR=0.175 GT:AD:DP:GQ:PGT:PID:PL 0/0:38,0,4:42:47:1|0:36282399_CA_C:0,114,1779,47,1711,1698 0/0:47,0,0:47:99:.:.:0,105,1575,105,1575,1575 0/0:61,0,0:61:99:.:.:0,120,1800,120,1800,1800 0/0:49,0,0:49:99:.:.:0,111,1485,111,1485,1485 0/0:52,0,0:52:99:.:.:0,114,1710,114,1710,1710 0/2:52,0,11:63:99:1|0:36282417_A_G:141,308,2777,0,2469,2436 0/2:30,0,5:35:39:1|0:36282417_A_G:39,128,1226,0,1098,1081 0/0:32,0,0:32:75:.:.:0,75,1125,75,1125,1125 0/0:37,0,0:37:90:.:.:0,90,1350,90,1350,1350 0/0:48,0,0:48:99:.:.:0,108,1620,108,1620,1620 0/0:41,0,0:41:75:.:.:0,75,1125,75,1125,1125 0/0:34,0,0:34:63:.:.:0,63,1080,63,1080,1080 ./.:0,0,0:0 0/0:37,0,0:37:90:.:.:0,90,1350,90,1350,1350 0/0:28,0,0:28:81:.:.:0,81,1215,81,1215,1215 0/0:46,0,0:46:75:.:.:0,75,1407,75,1407,1407 0/0:31,0,0:31:84:.:.:0,84,1260,84,1260,1260 0/0:56,0,0:56:99:.:.:0,120,1800,120,1800,1800 0/0:69,0,0:69:99:.:.:0,120,1800,120,1800,1800 0/0:23,0,0:23:57:.:.:0,57,855,57,855,855 0/0:41,0,0:41:87:.:.:0,87,1305,87,1305,1305 0/0:69,0,0:69:99:.:.:0,120,1800,120,1800,1800 0/0:38,0,0:38:80:.:.:0,80,1267,80,1267,1267 0/0:103,0,0:103:99:.:.:0,120,1800,120,1800,1800 0/0:23,0,0:23:51:.:.:0,51,765,51,765,765 0/0:51,0,0:51:99:.:.:0,120,1558,120,1558,1558 0/2:23,0,5:28:82:1|0:36282417_A_G:82,153,1143,0,990,974 0/0:30,0,0:30:75:.:.:0,75,1125,75,1125,1125 0/0:30,0,0:30:78:.:.:0,78,1170,78,1170,1170 0/0:42,0,0:42:81:.:.:0,81,1215,81,1215,1215 0/0:28,0,0:28:57:.:.:0,57,855,57,855,855 0/0:35,0,0:35:90:.:.:0,90,1350,90,1350,1350 0/0:37,0,0:37:99:.:.:0,99,1485,99,1485,1485 0/0:13,0,0:13:27:.:.:0,27,405,27,405,405 0/0:63,0,0:63:99:.:.:0,120,1800,120,1800,1800 0/0:92,0,0:92:99:.:.:0,120,1800,120,1800,1800 0/0:40,0,0:40:99:.:.:0,99,1485,99,1485,1485 0/0:48,0,0:48:99:.:.:0,99,1485,99,1485,1485 0/0:39,0,0:39:90:.:.:0,90,1350,90,1350,1350 0/0:28,0,0:28:57:.:.:0,57,855,57,855,855 0/0:35,0,0:35:78:.:.:0,78,1170,78,1170,1170 0/0:26,0,0:26:54:.:.:0,54,810,54,810,810 0/0:34,0,0:34:63:.:.:0,63,945,63,945,945 0/0:23,0,0:23:45:.:.:0,45,675,45,675,675 0/2:22,0,5:27:17:1|0:36282417_A_G:17,83,1043,0,959,945 0/0:56,0,0:56:99:.:.:0,120,1800,120,1800,1800 0/0:45,0,0:45:99:.:.:0,105,1575,105,1575,1575 0/0:79,0,0:79:99:.:.:0,120,1800,120,1800,1800 0/0:37,0,0:37:45:.:.:0,45,675,45,675,675 0/0:29,0,0:29:54:.:.:0,54,810,54,810,810 0/0:34,0,0:34:83:.:.:0,83,1148,83,1148,1148 0/0:33,0,0:33:84:.:.:0,84,1260,84,1260,1260 0/0:35,0,0:35:90:.:.:0,90,1350,90,1350,1350 0/0:33,0,1:34:95:1|0:36282399_CAAAAAAAAAAAAA_C:0,99,1528,95,1525,1522 0/0:15,0,0:15:33:.:.:0,33,495,33,495,495 0/0:1,0,0:1:3:.:.:0,3,32,3,32,32 0/0:72,0,0:72:99:.:.:0,120,1800,120,1800,1800 0/0:117,0,0:117:99:.:.:0,120,1800,120,1800,1800 0/0:37,0,0:37:96:.:.:0,96,1440,96,1440,1440 0/0:42,0,0:42:99:.:.:0,105,1575,105,1575,1575 0/0:50,0,0:50:99:.:.:0,99,1485,99,1485,1485 0/0:47,0,0:47:99:.:.:0,120,1800,120,1800,1800 0/1:24,14,0:38:99:1|0:36282399_CAA_C:428,0,1204,506,1251,1757 0/0:24,0,0:24:48:.:.:0,48,720,48,720,720 0/0:34,0,0:34:67:.:.:0,67,1051,67,1051,1051 0/0:45,0,0:45:99:.:.:0,108,1620,108,1620,1620 0/0:37,0,0:37:69:.:.:0,69,1035,69,1035,1035 0/0:37,0,0:37:81:.:.:0,81,1215,81,1215,1215 0/0:38,0,0:38:99:.:.:0,102,1530,102,1530,1530 0/0:19,0,0:19:57:.:.:0,57,662,57,662,662 0/0:53,0,0:53:99:.:.:0,105,1575,105,1575,1575 0/0:37,0,0:37:84:.:.:0,84,1260,84,1260,1260 0/0:47,0,0:47:99:.:.:0,111,1617,111,1617,1617 0/0:65,0,0:65:99:.:.:0,120,1800,120,1800,1800 0/0:64,0,0:64:99:.:.:0,120,1800,120,1800,1800 0/0:67,0,9:76:9:0|1:36282422_AGAAAGAAAGAAAG_A:0,210,3084,9,2884,2859 0/0:44,0,0:44:99:.:.:0,108,1620,108,1620,1620 0/0:137,0,0:137:99:.:.:0,120,1800,120,1800,1800 0/0:72,0,0:72:99:.:.:0,120,1800,120,1800,1800 0/0:41,0,0:41:81:.:.:0,81,1215,81,1215,1215 0/0:51,0,0:51:99:.:.:0,110,1505,110,1505,1505 0/0:42,0,0:42:90:.:.:0,90,1350,90,1350,1350 0/2:35,0,13:48:99:1|0:36282417_A_G:199,318,2002,0,1683,1644 0/1:17,11,0:28:99:1|0:36282417_A_G:407,0,832,464,874,1339 0/0:13,0,0:13:21:.:.:0,21,315,21,315,315 0/0:120,0,0:120:99:.:.:0,100,1800,100,1800,1800 0/0:68,0,0:68:99:.:.:0,120,1800,120,1800,1800 0/0:46,0,0:46:99:.:.:0,102,1530,102,1530,1530 0/0:17,0,0:17:39:.:.:0,39,585,39,585,585 0/0:30,0,0:30:78:.:.:0,78,1170,78,1170,1170 0/2:38,0,7:45:99:1|0:36282417_A_G:108,221,1774,0,1553,1533 0/0:85,0,0:85:99:.:.:0,120,1800,120,1800,1800 0/0:29,0,0:29:57:.:.:0,57,855,57,855,855 0/0:3,0,0:3:9:.:.:0,9,95,9,95,95 0/0:47,0,0:47:99:.:.:0,108,1620,108,1620,1620 0/0:51,0,0:51:99:.:.:0,117,1755,117,1755,1755 0/0:43,0,0:43:99:.:.:0,105,1575,105,1575,1575 0/0:19,0,0:19:48:.:.:0,48,720,48,720,720 0/0:24,0,2:26:43:1|0:36282399_CAA_C:0,72,1079,43,1050,1043 0/0:44,0,0:44:99:.:.:0,104,1248,104,1248,1248 1 36282427 . G A,* 1732.77 . AC=2,8;AF=0.010,0.040;AN=198;BaseQRankSum=-2.049e+00;ClippingRankSum=0.334;DP=4243;FS=0.000;InbreedingCoeff=0.0139;MLEAC=2,10;MLEAF=0.010,0.051;MQ=51.26;MQRankSum=-2.718e+00;QD=4.54;ReadPosRankSum=-1.317e+00;SOR=0.220 GT:AD:DP:GQ:PGT:PID:PL 0/0:38,0,4:42:47:1|0:36282399_CA_C:0,114,1779,47,1711,1698 0/0:43,0,0:43:38:.:.:0,38,1105,38,1105,1105 0/0:63,0,0:63:15:.:.:0,15,1722,15,1722,1722 0/0:48,0,0:48:0:.:.:0,0,1058,0,1058,1058 0/0:49,0,0:49:0:.:.:0,0,1123,0,1123,1123 0/2:52,0,11:63:99:1|0:36282417_A_G:141,308,2777,0,2469,2436 0/2:30,0,5:35:39:1|0:36282417_A_G:39,128,1226,0,1098,1081 0/0:34,0,0:34:0:.:.:0,0,742,0,742,742 0/0:39,0,0:39:0:.:.:0,0,869,0,869,869 0/0:42,0,0:42:0:.:.:0,0,500,0,500,500 0/0:24,1,0:25:19:1|0:36282399_CA_C:0,19,884,74,891,946 0/0:33,0,0:33:0:.:.:0,0,751,0,751,751 ./.:0,0,0:0 0/0:38,0,0:38:0:.:.:0,0,804,0,804,804 0/0:31,0,0:31:56:.:.:0,56,1023,56,1023,1023 0/0:45,0,0:45:0:.:.:0,0,741,0,741,741 0/0:24,0,0:24:38:.:.:0,38,733,38,733,733 0/0:62,0,0:62:0:.:.:0,0,1561,0,1561,1561 0/0:71,0,0:71:12:.:.:0,12,1803,12,1803,1803 0/0:21,0,0:21:31:.:.:0,31,540,31,540,540 0/0:37,0,0:37:0:.:.:0,0,599,0,599,599 0/0:68,0,0:68:3:.:.:0,3,1688,3,1688,1688 0/0:33,0,0:33:1:.:.:0,1,777,1,777,777 0/0:102,0,0:102:0:.:.:0,0,2233,0,2233,2233 0/0:19,0,0:19:19:.:.:0,19,474,19,474,474 0/0:45,0,0:45:0:.:.:0,0,906,0,906,906 0/2:23,0,5:28:82:1|0:36282417_A_G:82,153,1143,0,990,974 0/0:29,0,0:29:0:.:.:0,0,661,0,661,661 0/0:23,0,0:23:0:.:.:0,0,506,0,506,506 0/0:40,0,0:40:0:.:.:0,0,727,0,727,727 0/0:29,0,0:29:0:.:.:0,0,533,0,533,533 0/0:34,0,0:34:0:.:.:0,0,745,0,745,745 0/0:36,0,0:36:35:.:.:0,35,840,35,840,840 0/0:12,0,0:12:1:.:.:0,1,307,1,307,307 0/0:57,0,0:57:88:.:.:0,88,1627,88,1627,1627 0/0:83,0,0:83:0:.:.:0,0,2070,0,2070,2070 0/0:38,0,0:38:0:.:.:0,0,795,0,795,795 0/0:42,0,0:42:0:.:.:0,0,524,0,524,524 0/0:35,0,0:35:0:.:.:0,0,849,0,849,849 0/0:26,0,0:26:0:.:.:0,0,344,0,344,344 0/0:34,0,0:34:0:.:.:0,0,867,0,867,867 0/0:26,0,0:26:0:.:.:0,0,485,0,485,485 0/0:34,0,0:34:0:.:.:0,0,491,0,491,491 0/0:22,0,0:22:0:.:.:0,0,358,0,358,358 0/2:22,0,5:27:17:1|0:36282417_A_G:17,83,1043,0,959,945 0/0:40,12,0:52:34:0|1:36282423_G_A:0,34,1501,120,1525,1612 0/0:46,0,0:46:0:.:.:0,0,989,0,989,989 0/0:73,0,0:73:0:.:.:0,0,1506,0,1506,1506 0/1:9,25,0:34:99:0|1:36282423_G_A:166,0,395,192,446,638 0/0:29,0,0:29:0:.:.:0,0,469,0,469,469 0/0:35,0,0:35:0:.:.:0,0,850,0,850,850 0/0:33,0,0:33:9:.:.:0,9,850,9,850,850 0/0:29,0,0:29:6:.:.:0,6,801,6,801,801 0/0:33,0,1:34:95:1|0:36282399_CAAAAAAAAAAAAA_C:0,99,1528,95,1525,1522 0/0:11,0,0:11:20:.:.:0,20,243,20,243,243 0/0:1,0,0:1:3:.:.:0,3,32,3,32,32 0/0:74,0,0:74:0:.:.:0,0,1853,0,1853,1853 0/0:121,0,0:121:16:.:.:0,16,2963,16,2963,2963 0/0:37,0,0:37:36:.:.:0,36,942,36,942,942 0/0:41,0,0:41:22:.:.:0,22,1069,22,1069,1069 0/0:51,0,0:51:0:.:.:0,0,853,0,853,853 0/0:49,0,0:49:36:.:.:0,36,1341,36,1341,1341 0/2:24,0,14:38:99:1|0:36282399_CAA_C:428,506,1757,0,1251,1204 0/0:22,0,0:22:0:.:.:0,0,448,0,448,448 0/0:34,0,0:34:0:.:.:0,0,703,0,703,703 0/0:44,0,0:44:67:.:.:0,67,1187,67,1187,1187 0/0:22,3,0:25:6:1|0:36282417_A_G:0,6,809,66,817,877 0/0:37,0,0:37:0:.:.:0,0,743,0,743,743 0/0:37,0,0:37:44:.:.:0,44,1088,44,1088,1088 0/0:19,0,0:19:57:.:.:0,57,662,57,662,662 0/1:26,10,0:36:99:1|0:36282417_A_G:217,0,1267,304,1298,1602 0/0:36,0,0:36:0:.:.:0,0,779,0,779,779 0/0:45,0,0:45:0:.:.:0,0,1172,0,1172,1172 0/0:52,4,0:56:86:1|0:36282417_A_G:0,86,2070,158,2080,2152 0/0:59,0,0:59:19:.:.:0,19,1467,19,1467,1467 0/0:67,0,9:76:9:0|1:36282422_AGAAAGAAAGAAAG_A:0,210,3084,9,2884,2859 0/0:47,0,0:47:15:.:.:0,15,1247,15,1247,1247 0/0:127,0,0:127:0:.:.:0,0,2925,0,2925,2925 0/0:72,0,0:72:0:.:.:0,0,1597,0,1597,1597 0/0:40,0,0:40:0:.:.:0,0,623,0,623,623 0/0:53,0,0:53:0:.:.:0,0,1246,0,1246,1246 0/0:41,0,0:41:0:.:.:0,0,883,0,883,883 0/2:35,0,13:48:99:1|0:36282417_A_G:199,318,2002,0,1683,1644 0/2:17,0,11:28:99:1|0:36282417_A_G:407,464,1339,0,874,832 0/0:11,0,0:11:0:.:.:0,0,150,0,150,150 0/0:120,0,0:120:99:.:.:0,100,1800,100,1800,1800 0/0:64,0,0:64:26:.:.:0,26,1654,26,1654,1654 0/0:46,0,0:46:99:.:.:0,102,1530,102,1530,1530 0/0:18,0,0:18:0:.:.:0,0,371,0,371,371 0/0:30,0,0:30:27:.:.:0,27,760,27,760,760 0/2:38,0,7:45:99:1|0:36282417_A_G:108,221,1774,0,1553,1533 0/0:81,0,0:81:70:.:.:0,70,2101,70,2101,2101 0/0:23,0,0:23:0:.:.:0,0,460,0,460,460 0/0:3,0,0:3:0:.:.:0,0,24,0,24,24 0/0:44,0,0:44:0:.:.:0,0,1139,0,1139,1139 0/0:60,0,0:60:8:.:.:0,8,1491,8,1491,1491 0/0:40,0,0:40:0:.:.:0,0,989,0,989,989 0/0:18,0,0:18:6:.:.:0,6,490,6,490,490 0/0:24,0,2:26:43:1|0:36282399_CAA_C:0,72,1079,43,1050,1043 0/0:47,0,0:47:26:.:.:0,26,1163,26,1163,1163 1 36282430 . AG A,* 1174.58 . AC=2,6;AF=0.010,0.030;AN=198;BaseQRankSum=-3.937e+00;ClippingRankSum=0.769;DP=4626;FS=0.000;InbreedingCoeff=-0.0394;MLEAC=2,6;MLEAF=0.010,0.030;MQ=50.39;MQRankSum=-3.381e+00;QD=3.73;ReadPosRankSum=-2.670e-01;SOR=0.159 GT:AD:DP:GQ:PGT:PID:PL 0/0:38,0,4:42:47:1|0:36282399_CA_C:0,114,1779,47,1711,1698 0/0:53,0,0:53:99:.:.:0,120,1800,120,1800,1800 0/0:63,0,0:63:99:.:.:0,120,1800,120,1800,1800 0/0:55,0,0:55:99:.:.:0,120,1800,120,1800,1800 0/0:56,0,0:56:99:.:.:0,120,1800,120,1800,1800 0/2:52,0,11:63:99:1|0:36282417_A_G:141,308,2777,0,2469,2436 0/2:30,0,5:35:39:1|0:36282417_A_G:39,128,1226,0,1098,1081 0/0:42,0,0:42:90:.:.:0,90,1350,90,1350,1350 0/0:44,0,0:44:99:.:.:0,111,1665,111,1665,1665 0/0:47,0,0:47:99:.:.:0,102,1530,102,1530,1530 0/0:41,0,0:41:66:.:.:0,66,990,66,990,990 0/0:34,0,0:34:75:.:.:0,75,1125,75,1125,1125 ./.:0,0,0:0 0/0:39,0,0:39:90:.:.:0,90,1350,90,1350,1350 0/0:37,0,0:37:99:.:.:0,99,1485,99,1485,1485 0/0:50,0,0:50:99:.:.:0,108,1620,108,1620,1620 0/0:36,0,0:36:90:.:.:0,90,1350,90,1350,1350 0/0:61,0,0:61:99:.:.:0,120,1800,120,1800,1800 0/0:74,0,0:74:99:.:.:0,120,1800,120,1800,1800 0/0:22,0,0:22:45:.:.:0,45,675,45,675,675 0/0:44,0,0:44:81:.:.:0,81,1215,81,1215,1215 0/0:75,0,0:75:99:.:.:0,120,1800,120,1800,1800 0/0:37,0,0:37:96:.:.:0,96,1440,96,1440,1440 0/0:114,0,0:114:99:.:.:0,120,1800,120,1800,1800 0/0:24,0,0:24:48:.:.:0,48,720,48,720,720 0/0:53,0,0:53:99:.:.:0,120,1800,120,1800,1800 0/2:23,0,5:28:82:1|0:36282417_A_G:82,153,1143,0,990,974 0/0:31,0,0:31:69:.:.:0,69,1035,69,1035,1035 0/0:35,0,0:35:75:.:.:0,75,1125,75,1125,1125 0/0:41,0,0:41:87:.:.:0,87,1305,87,1305,1305 0/0:30,0,0:30:63:.:.:0,63,945,63,945,945 0/0:37,0,0:37:90:.:.:0,90,1350,90,1350,1350 0/0:38,0,0:38:99:.:.:0,99,1485,99,1485,1485 0/0:16,0,0:16:36:.:.:0,36,540,36,540,540 0/0:47,0,0:47:99:.:.:0,105,1575,105,1575,1575 0/0:97,0,0:97:99:.:.:0,120,1800,120,1800,1800 0/0:43,0,0:43:99:.:.:0,99,1485,99,1485,1485 0/0:50,0,0:50:96:.:.:0,96,1440,96,1440,1440 0/0:40,0,0:40:99:.:.:0,99,1485,99,1485,1485 0/0:32,0,0:32:57:.:.:0,57,855,57,855,855 0/0:35,0,0:35:81:.:.:0,81,1215,81,1215,1215 0/0:28,0,0:28:60:.:.:0,60,900,60,900,900 0/0:34,0,0:34:69:.:.:0,69,1035,69,1035,1035 0/0:23,0,0:23:48:.:.:0,48,720,48,720,720 0/2:22,0,5:27:17:1|0:36280,959,945 0/0:62,0,0:62:99:.:.:0,120,1800,120,1800,1800 0/0:49,0,0:49:99:.:.:0,105,1575,105,1575,1575 0/0:86,0,0:86:99:.:.:0,120,1800,120,1800,1800 0/0:39,0,0:39:54:.:.:0,54,810,54,810,810 0/0:32,0,0:32:60:.:.:0,60,900,60,900,900 0/0:37,0,0:37:90:.:.:0,90,1350,90,1350,1350 0/0:37,0,0:37:90:.:.:0,90,1350,90,1350,1350 0/0:34,0,0:34:81:.:.:0,81,1215,81,1215,1215 0/0:33,0,1:34:95:1|0:36282399_CAAAAAAAAAAAAA_C:0,99,1528,95,1525,1522 0/0:12,0,0:12:30:.:.:0,30,450,30,450,450 0/0:1,0,0:1:3:.:.:0,3,32,3,32,32 0/0:72,0,0:72:99:.:.:0,120,1800,120,1800,1800 0/0:129,0,0:129:99:.:.:0,120,1800,120,1800,1800 0/0:41,0,0:41:99:.:.:0,105,1575,105,1575,1575 0/0:49,0,0:49:99:.:.:0,120,1800,120,1800,1800 0/0:54,0,0:54:99:.:.:0,108,1620,108,1620,1620 0/0:52,0,0:52:99:.:.:0,120,1800,120,1800,1800 0/1:26,13,0:39:99:1|0:36282399_CAA_C:387,0,1335,474,1377,1851 0/0:21,0,0:21:48:.:.:0,48,720,48,720,720 0/0:34,0,0:34:84:.:.:0,84,1260,84,1260,1260 0/0:47,0,0:47:99:.:.:0,111,1665,111,1665,1665 0/0:39,0,0:39:66:.:.:0,66,990,66,990,990 0/0:37,0,0:37:84:.:.:0,84,1260,84,1260,1260 0/0:39,0,0:39:99:.:.:0,102,1530,102,1530,1530 0/0:21,0,0:21:60:.:.:0,60,900,60,900,900 0/0:54,0,0:54:99:.:.:0,105,1575,105,1575,1575 0/0:37,0,0:37:90:.:.:0,90,1350,90,1350,1350 0/0:45,0,0:45:99:.:.:0,117,1755,117,1755,1755 0/0:74,0,0:74:99:.:.:0,120,1800,120,1800,1800 0/0:69,0,0:69:99:.:.:0,120,1800,120,1800,1800 0/0:67,0,9:76:9:0|1:36282422_AGAAAGAAAGAAAG_A:0,210,3084,9,2884,2859 0/0:47,0,0:47:99:.:.:0,100,1541,100,1541,1541 0/0:141,0,0:141:99:.:.:0,120,1800,120,1800,1800 0/0:75,0,0:75:99:.:.:0,120,1800,120,1800,1800 0/0:41,0,0:41:81:.:.:0,81,1215,81,1215,1215 0/0:58,0,0:58:99:.:.:0,120,1800,120,1800,1800 0/0:44,0,0:44:99:.:.:0,105,1575,105,1575,1575 0/2:35,0,13:48:99:1|0:36282417_A_G:199,318,2002,0,1683,1644 0/1:21,9,0:30:99:1|0:36282417_A_G:335,0,1051,408,1084,1492 0/0:14,0,0:14:27:.:.:0,27,405,27,405,405 0/0:120,0,0:120:99:.:.:0,100,1800,100,1800,1800 0/0:65,0,0:65:99:.:.:0,120,1800,120,1800,1800 0/0:46,0,0:46:99:.:.:0,102,1530,102,1530,1530 0/0:19,0,0:19:45:.:.:0,45,675,45,675,675 0/0:32,0,0:32:78:.:.:0,78,1170,78,1170,1170 0/2:38,0,7:45:99:1|0:36282417_A_G:108,221,1774,0,1553,1533 0/0:92,0,0:92:99:.:.:0,120,1800,120,1800,1800 0/0:30,0,0:30:63:.:.:0,63,945,63,945,945 0/0:4,0,0:4:12:.:.:0,12,126,12,126,126 0/0:50,0,0:50:99:.:.:0,114,1710,114,1710,1710 0/0:60,0,0:60:99:.:.:0,120,1800,120,1800,1800 0/0:43,0,0:43:99:.:.:0,99,1485,99,1485,1485 0/0:20,0,0:20:45:.:.:0,45,675,45,675,675 0/0:24,0,2:26:43:1|0:36282399_CAA_C:0,72,1079,43,1050,1043 0/0:50,0,0:50:99:.:.:0,119,1548,119,1548,1548 1 36282431 . G A,* 1419.13 . AC=1,8;AF=5.051e-03,0.040;AN=198;BaseQRankSum=-3.717e+00;ClippingRankSum=0.517;DP=4523;FS=0.000;InbreedingCoeff=0.0111;MLEAC=1,10;MLEAF=5.051e-03,0.051;MQ=51.85;MQRankSum=-4.317e+00;QD=4.01;ReadPosRankSum=-1.350e+00;SOR=0.168 GT:AD:DP:GQ:PGT:PID:PL 0/0:38,0,4:42:47:1|0:36282399_CA_C:0,114,1779,47,1711,1698 0/0:47,0,0:47:55:.:.:0,55,1329,55,1329,1329 0/0:70,0,0:70:49:.:.:0,49,1951,49,1951,1951 0/0:58,0,0:58:15:.:.:0,15,1555,15,1555,1555 0/0:49,0,0:49:21:.:.:0,21,1370,21,1370,1370 0/2:52,0,11:63:99:1|0:36282417_A_G:141,308,2777,0,2469,2436 0/2:30,0,5:35:39:1|0:36282417_A_G:39,128,1226,0,1098,1081 0/0:45,0,0:45:0:.:.:0,0,1075,0,1075,1075 0/0:45,0,0:45:4:.:.:0,4,1195,4,1195,1195 0/0:40,0,0:40:0:.:.:0,0,603,0,603,603 0/0:37,0,0:37:0:.:.:0,0,808,0,808,808 0/0:30,0,0:30:0:.:.:0,0,790,0,790,790 ./.:0,0,0:0 0/0:37,0,0:37:38:.:.:0,38,982,38,982,982 0/0:35,0,0:35:84:.:.:0,84,1208,84,1208,1208 0/0:48,0,0:48:0:.:.:0,0,909,0,909,909 0/0:34,0,0:34:41:.:.:0,41,948,41,948,948 0/0:62,0,0:62:31:.:.:0,31,1659,31,1659,1659 0/0:76,0,0:76:56:.:.:0,56,2103,56,2103,2103 0/0:21,0,0:21:0:.:.:0,0,497,0,497,497 0/0:37,0,0:37:0:.:.:0,0,859,0,859,859 0/0:81,0,0:81:79:.:.:0,79,2197,79,2197,2197 0/0:34,0,0:34:65:.:.:0,65,952,65,952,952 0/0:114,0,0:114:98:.:.:0,98,2934,98,2934,2934 0/0:23,0,0:23:19:.:.:0,19,612,19,612,612 0/0:53,0,0:53:27:.:.:0,27,1311,27,1311,1311 0/2:23,0,5:28:82:1|0:36282417_A_G:82,153,1143,0,990,974 0/0:28,0,0:28:0:.:.:0,0,676,0,676,676 0/0:26,0,0:26:0:.:.:0,0,664,0,664,664 0/0:40,0,0:40:0:.:.:0,0,831,0,831,831 0/0:32,0,0:32:0:.:.:0,0,730,0,730,730 0/0:36,0,0:36:0:.:.:0,0,868,0,868,868 0/0:37,0,0:37:70:.:.:0,70,985,70,985,985 0/0:16,0,0:16:4:.:.:0,4,432,4,432,432 0/0:47,0,0:47:99:.:.:0,105,1575,105,1575,1575 0/0:88,0,0:88:6:.:.:0,6,2288,6,2288,2288 0/0:40,0,0:40:34:.:.:0,34,1088,34,1088,1088 0/0:45,0,0:45:0:.:.:0,0,687,0,687,687 0/0:41,0,0:41:4:.:.:0,4,1139,4,1139,1139 0/0:28,0,0:28:0:.:.:0,0,477,0,477,477 0/0:36,0,0:36:0:.:.:0,0,910,0,910,910 0/0:29,0,0:29:0:.:.:0,0,663,0,663,663 0/0:34,0,0:34:0:.:.:0,0,629,0,629,629 0/0:24,0,0:24:0:.:.:0,0,500,0,500,500 0/2:22,0,5:27:17:1|0:36282417_A_G:17,83,1043,0,959,945 0/0:61,0,0:61:0:.:.:0,0,1494,0,1494,1494 0/0:48,0,0:48:0:.:.:0,0,1177,0,1177,1177 0/0:82,0,0:82:0:.:.:0,0,1748,0,1748,1748 0/0:36,0,0:36:0:.:.:0,0,279,0,279,279 0/0:32,0,0:32:0:.:.:0,0,558,0,558,558 0/0:35,0,0:35:8:.:.:0,8,900,8,900,900 0/0:37,0,0:37:0:.:.:0,0,907,0,907,907 0/0:35,0,0:35:0:.:.:0,0,797,0,797,797 0/0:33,0,1:34:95:1|0:36282399_CAAAAAAAAAAAAA_C:0,99,1528,95,1525,1522 0/0:12,0,0:12:30:.:.:0,30,450,30,450,450 0/0:1,0,0:1:3:.:.:0,3,32,3,32,32 0/0:77,0,0:77:0:.:.:0,0,1981,0,1981,1981 0/0:129,0,0:129:99:.:.:0,120,1800,120,1800,1800 0/0:41,0,0:41:37:.:.:0,37,1055,37,1055,1055 0/0:45,0,0:45:15:.:.:0,15,1199,15,1199,1199 0/0:50,0,0:50:0:.:.:0,0,930,0,930,930 0/0:53,0,0:53:21:.:.:0,21,1470,21,1470,1470 0/2:26,0,13:39:99:1|0:36282399_CAA_C:387,474,1851,0,1377,1335 0/0:23,0,0:23:2:.:.:0,2,579,2,579,579 0/0:34,0,0:34:0:.:.:0,0,702,0,702,702 0/0:42,0,0:42:98:.:.:0,98,1294,98,1294,1294 0/0:36,0,0:36:0:.:.:0,0,715,0,715,715 0/0:36,0,0:36:0:.:.:0,0,901,0,901,901 0/0:38,0,0:38:93:.:.:0,93,1236,93,1236,1236 0/0:21,0,0:21:49:.:.:0,49,658,49,658,658 0/1:30,9,0:39:99:1|0:36282417_A_G:200,0,1407,296,1435,1732 0/0:33,0,0:33:0:.:.:0,0,789,0,789,789 0/0:43,0,0:43:86:.:.:0,86,1402,86,1402,1402 0/0:71,0,0:71:61:.:.:0,61,1946,61,1946,1946 0/0:66,0,0:66:36:.:.:0,36,1746,36,1746,1746 0/0:67,0,9:76:9:0|1:36282422_AGAAAGAAAGAAAG_A:0,210,3084,9,2884,2859 0/0:47,0,0:47:99:.:.:0,100,1541,100,1541,1541 0/0:143,0,0:143:24:.:.:0,24,3754,24,3754,3754 0/0:70,0,0:70:0:.:.:0,0,1814,0,1814,1814 0/0:34,0,0:34:0:.:.:0,0,628,0,628,628 0/0:58,0,0:58:0:.:.:0,0,1512,0,1512,1512 0/0:46,0,0:46:0:.:.:0,0,1065,0,1065,1065 0/2:35,0,13:48:99:1|0:36282417_A_G:199,318,2002,0,1683,1644 0/2:21,0,9:30:99:1|0:36282417_A_G:335,408,1492,0,1084,1051 0/0:15,0,0:15:0:.:.:0,0,307,0,307,307 0/0:131,0,0:131:29:.:.:0,29,3557,29,3557,3557 0/0:72,0,0:72:53:.:.:0,53,1998,53,1998,1998 0/0:46,0,0:46:99:.:.:0,102,1530,102,1530,1530 0/0:16,0,0:16:0:.:.:0,0,445,0,445,445 0/0:33,0,0:33:11:.:.:0,11,822,11,822,822 0/2:38,0,7:45:99:1|0:36282417_A_G:108,221,1774,0,1553,1533 0/0:92,0,0:92:26:.:.:0,26,2207,26,2207,2207 0/0:28,0,0:28:0:.:.:0,0,532,0,532,532 0/0:3,0,0:3:9:.:.:0,9,89,9,89,89 0/0:45,0,0:45:10:.:.:0,10,1275,10,1275,1275 0/0:63,0,0:63:47:.:.:0,47,1736,47,1736,1736 0/0:42,0,0:42:11:.:.:0,11,1121,11,1121,1121 0/0:18,0,0:18:33:.:.:0,33,581,33,581,581 0/0:24,0,2:26:43:1|0:36282399_CAA_C:0,72,1079,43,1050,1043 0/0:47,0,0:47:0:.:.:0,0,1126,0,1126,1126 1 36282434 . AG A,* 1056.38 . AC=2,5;AF=0.010,0.025;AN=198;BaseQRankSum=-4.531e+00;ClippingRankSum=0.338;DP=4792;FS=0.000;InbreedingCoeff=-0.0339;MLEAC=2,5;MLEAF=0.010,0.025;MQ=50.70;MQRankSum=-3.299e+00;QD=3.58;ReadPosRankSum=-2.158e+00;SOR=0.157 GT:AD:DP:GQ:PGT:PID:PL 0/0:38,0,4:42:47:1|0:36282399_CA_C:0,114,1779,47,1711,1698 0/0:56,0,0:56:99:.:.:0,120,1800,120,1800,1800 0/0:76,0,0:76:99:.:.:0,120,1800,120,1800,1800 0/0:61,0,0:61:99:.:.:0,120,1800,120,1800,1800 0/0:58,0,0:58:99:.:.:0,120,1800,120,1800,1800 0/2:52,0,11:63:99:1|0:36282417_A_G:141,308,2777,0,2469,2436 0/2:30,0,5:35:39:1|0:36282417_A_G:39,128,1226,0,1098,1081 0/0:46,0,0:46:99:.:.:0,99,1485,99,1485,1485 0/0:47,0,0:47:99:.:.:0,111,1665,111,1665,1665 0/0:47,0,0:47:99:.:.:0,99,1485,99,1485,1485 0/0:42,0,0:42:72:.:.:0,72,1080,72,1080,1080 0/0:37,0,0:37:90:.:.:0,90,1350,90,1350,1350 ./.:0,0,0:0 0/0:42,0,0:42:99:.:.:0,102,1530,102,1530,1530 0/0:38,0,0:38:99:.:.:0,99,1373,99,1373,1373 0/0:53,0,0:53:99:.:.:0,108,1620,108,1620,1620 0/0:36,0,0:36:90:.:.:0,90,1350,90,1350,1350 0/0:67,0,0:67:99:.:.:0,120,1800,120,1800,1800 0/0:82,0,0:82:99:.:.:0,120,1800,120,1800,1800 0/0:20,0,0:20:45:.:.:0,45,675,45,675,675 0/0:42,0,0:42:81:.:.:0,81,1215,81,1215,1215 0/0:86,0,0:86:99:.:.:0,120,1800,120,1800,1800 0/0:35,0,0:35:96:.:.:0,96,1440,96,1440,1440 0/0:125,0,0:125:99:.:.:0,120,1800,120,1800,1800 0/0:26,0,0:26:51:.:.:0,51,765,51,765,765 0/0:60,0,0:60:99:.:.:0,120,1800,120,1800,1800 0/0:33,0,0:33:72:.:.:0,72,1080,72,1080,1080 0/0:32,0,0:32:75:.:.:0,75,1125,75,1125,1125 0/0:32,0,0:32:72:.:.:0,72,1080,72,1080,1080 0/0:44,0,0:44:90:.:.:0,90,1350,90,1350,1350 0/0:32,0,0:32:69:.:.:0,69,1035,69,1035,1035 0/0:40,0,0:40:90:.:.:0,90,1350,90,1350,1350 0/0:41,0,0:41:99:.:.:0,99,1485,99,1485,1485 0/0:19,0,0:19:45:.:.:0,45,675,45,675,675 0/0:47,0,0:47:99:.:.:0,105,1575,105,1575,1575 0/0:101,0,0:101:99:.:.:0,120,1800,120,1800,1800 0/0:46,0,0:46:99:.:.:0,102,1530,102,1530,1530 0/0:50,0,0:50:99:.:.:0,99,1485,99,1485,1485 0/0:42,0,0:42:99:.:.:0,102,1530,102,1530,1530 0/0:29,0,0:29:60:.:.:0,60,900,60,900,900 0/0:38,0,0:38:90:.:.:0,90,1350,90,1350,1350 0/0:35,0,0:35:81:.:.:0,81,1215,81,1215,1215 0/0:32,0,0:32:66:.:.:0,66,990,66,990,990 0/0:27,0,0:27:48:.:.:0,48,720,48,720,720 0/2:22,0,5:27:17:1|0:36282417_A_G:17,83,1043,0,959,945 0/0:65,0,0:65:99:.:.:0,120,1800,120,1800,1800 0/0:50,0,0:50:99:.:.:0,114,1710,114,1710,1710 0/0:90,0,0:90:99:.:.:0,120,1800,120,1800,1800 0/0:38,0,0:38:66:.:.:0,66,990,66,990,990 0/0:33,0,0:33:66:.:.:0,66,990,66,990,990 0/0:42,0,0:42:99:.:.:0,99,1485,99,1485,1485 0/0:40,0,0:40:99:.:.:0,99,1485,99,1485,1485 0/0:38,0,0:38:90:.:.:0,90,1350,90,1350,1350 0/0:33,0,1:34:95:1|0:36282399_CAAAAAAAAAAAAA_C:0,99,1528,95,1525,1522 0/0:17,0,0:17:36:.:.:0,36,540,36,540,540 0/0:1,0,0:1:3:.:.:0,3,32,3,32,32 0/0:76,0,0:76:99:.:.:0,120,1800,120,1800,1800 0/0:129,0,0:129:99:.:.:0,120,1800,120,1800,1800 0/0:41,0,0:41:99:.:.:0,105,1575,105,1575,1575 0/0:49,0,0:49:99:.:.:0,120,1800,120,1800,1800 0/0:54,0,0:54:99:.:.:0,111,1665,111,1665,1665 0/0:57,0,0:57:99:.:.:0,120,1800,120,1800,1800 0/1:30,12,0:42:99:1|0:36282399_CAA_C:377,0,1410,471,1451,1921 0/0:20,0,0:20:54:.:.:0,54,810,54,810,810 0/0:40,0,0:40:99:.:.:0,99,1485,99,1485,1485 0/0:46,0,0:46:99:.:.:0,111,1665,111,1665,1665 0/0:40,0,0:40:72:.:.:0,72,1080,72,1080,1080 0/0:41,0,0:41:99:.:.:0,99,1485,99,1485,1485 0/0:40,0,0:40:99:.:.:0,108,1620,108,1620,1620 0/0:21,0,0:21:63:.:.:0,63,730,63,730,730 0/0:54,0,0:54:99:.:.:0,111,1665,111,1665,1665 0/0:33,0,0:33:90:.:.:0,90,1350,90,1350,1350 0/0:51,0,0:51:99:.:.:0,120,1800,120,1800,1800 0/0:76,0,0:76:99:.:.:0,120,1800,120,1800,1800 0/0:79,0,0:79:99:.:.:0,120,1800,120,1800,1800 0/0:67,0,9:76:9:0|1:36282422_AGAAAGAAAGAAAG_A:0,210,3084,9,2884,2859 0/0:47,0,0:47:99:.:.:0,100,1541,100,1541,1541 0/0:157,0,0:157:99:.:.:0,120,1800,120,1800,1800 0/0:79,0,0:79:99:.:.:0,120,1800,120,1800,1800 0/0:40,0,0:40:90:.:.:0,90,1350,90,1350,1350 0/0:61,0,0:61:99:.:.:0,120,1800,120,1800,1800 0/0:45,0,0:45:99:.:.:0,111,1665,111,1665,1665 0/2:35,0,13:48:99:1|0:36282417_A_G:199,318,2002,0,1683,1644 0/1:24,11,0:35:99:1|0:36282417_A_G:298,0,1074,373,1106,1479 0/0:13,0,0:13:27:.:.:0,27,405,27,405,405 0/0:49,0,0:49:99:.:.:0,99,1485,99,1485,1485 0/0:76,0,0:76:99:.:.:0,120,1800,120,1800,1800 0/0:46,0,0:46:99:.:.:0,102,1530,102,1530,1530 0/0:21,0,0:21:51:.:.:0,51,765,51,765,765 0/0:34,0,0:34:81:.:.:0,81,1215,81,1215,1215 0/2:38,0,7:45:99:1|0:36282417_A_G:108,221,1774,0,1553,1533 0/0:96,0,0:96:99:.:.:0,120,1800,120,1800,1800 0/0:30,0,0:30:60:.:.:0,60,900,60,900,900 0/0:4,0,0:4:12:.:.:0,12,122,12,122,122 0/0:53,0,0:53:99:.:.:0,120,1800,120,1800,1800 0/0:65,0,0:65:99:.:.:0,120,1800,120,1800,1800 0/0:44,0,0:44:99:.:.:0,108,1620,108,1620,1620 0/0:24,0,0:24:57:.:.:0,57,855,57,855,855 0/0:24,0,2:26:43:1|0:36282399_CAA_C:0,72,1079,43,1050,1043 0/0:53,0,0:53:99:.:.:0,105,1708,105,1708,1708 1 36282435 . G A,* 1272.29 . AC=2,7;AF=0.010,0.035;AN=198;BaseQRankSum=-2.134e+00;ClippingRankSum=0.164;DP=4744;FS=0.000;InbreedingCoeff=0.0112;MLEAC=2,8;MLEAF=0.010,0.040;MQ=53.16;MQRankSum=-2.987e+00;QD=3.51;ReadPosRankSum=-1.395e+00;SOR=0.155 GT:AD:DP:GQ:PGT:PID:PL 0/0:38,0,4:42:47:1|0:36282399_CA_C:0,114,1779,47,1711,1698 0/0:59,0,0:59:0:.:.:0,0,1473,0,1473,1473 0/0:79,0,0:79:8:.:.:0,8,2213,8,2213,2213 0/0:63,0,0:63:20:.:.:0,20,1730,20,1730,1730 0/0:55,0,0:55:0:.:.:0,0,1444,0,1444,1444 0/2:52,0,11:63:99:1|0:36282417_A_G:141,308,2777,0,2469,2436 0/2:30,0,5:35:39:1|0:36282417_A_G:39,128,1226,0,1098,1081 0/0:44,0,0:44:10:.:.:0,10,1225,10,1225,1225 0/0:41,0,0:41:31:.:.:0,31,1222,31,1222,1222 0/0:47,0,0:47:0:.:.:0,0,881,0,881,881 0/0:39,0,0:39:0:.:.:0,0,876,0,876,876 0/0:36,0,0:36:0:.:.:0,0,951,0,951,951 ./.:0,0,0:0 0/0:41,0,0:41:6:.:.:0,6,1019,6,1019,1019 0/0:39,0,0:39:77:.:.:0,77,1316,77,1316,1316 0/0:53,0,0:53:0:.:.:0,0,1065,0,1065,1065 0/0:33,0,0:33:60:.:.:0,60,1004,60,1004,1004 0/0:68,0,0:68:2:.:.:0,2,1730,2,1730,1730 0/0:84,0,0:84:55:.:.:0,55,2273,55,2273,2273 0/0:21,0,0:21:9:.:.:0,9,522,9,522,522 0/0:44,0,0:44:0:.:.:0,0,1015,0,1015,1015 0/0:83,0,0:83:65:.:.:0,65,2354,65,2354,2354 0/0:36,0,0:36:35:.:.:0,35,930,35,930,930 0/0:119,0,0:119:51:.:.:0,51,3061,51,3061,3061 0/0:27,0,0:27:12:.:.:0,12,697,12,697,697 0/0:57,0,0:57:23:.:.:0,23,1464,23,1464,1464 0/1:24,4,0:28:80:1|0:36282417_A_G:80,0,1087,156,1104,1260 0/0:31,0,0:31:0:.:.:0,0,745,0,745,745 0/0:27,0,0:27:0:.:.:0,0,642,0,642,642 0/0:43,0,0:43:0:.:.:0,0,853,0,853,853 0/0:31,0,0:31:0:.:.:0,0,621,0,621,621 0/0:42,0,0:42:0:.:.:0,0,1008,0,1008,1008 0/0:41,0,0:41:62:.:.:0,62,1126,62,1126,1126 0/0:17,0,0:17:27:.:.:0,27,563,27,563,563 0/0:47,0,0:47:99:.:.:0,105,1575,105,1575,1575 0/0:95,0,0:95:77:.:.:0,77,2666,77,2666,2666 0/0:48,0,0:48:28:.:.:0,28,1224,28,1224,1224 0/0:49,0,0:49:0:.:.:0,0,603,0,603,603 0/0:42,0,0:42:11:.:.:0,11,1208,11,1208,1208 0/0:32,0,0:32:0:.:.:0,0,549,0,549,549 0/0:37,0,0:37:0:.:.:0,0,985,0,985,985 0/0:31,0,0:31:0:.:.:0,0,766,0,766,766 0/0:33,0,0:33:0:.:.:0,0,582,0,582,582 0/0:28,0,0:28:0:.:.:0,0,631,0,631,631 0/2:22,0,5:27:17:1|0:36282417_A_G:17,83,1043,0,959,945 0/0:66,0,0:66:70:.:.:0,70,1890,70,1890,1890 0/0:48,0,0:48:0:.:.:0,0,1255,0,1255,1255 0/0:78,0,0:78:0:.:.:0,0,1817,0,1817,1817 0/0:41,0,0:41:0:.:.:0,0,331,0,331,331 0/0:34,0,0:34:0:.:.:0,0,678,0,678,678 0/0:41,0,0:41:16:.:.:0,16,1117,16,1117,1117 0/0:41,0,0:41:0:.:.:0,0,1066,0,1066,1066 0/0:38,0,0:38:0:.:.:0,0,939,0,939,939 0/0:33,0,1:34:95:1|0:36282399_CAAAAAAAAAAAAA_C:0,99,1528,95,1525,1522 0/0:13,0,0:13:28:.:.:0,28,344,28,344,344 0/0:1,0,0:1:3:.:.:0,3,32,3,32,32 0/0:78,0,0:78:0:.:.:0,0,1874,0,1874,1874 0/0:137,0,0:137:33:.:.:0,33,3628,33,3628,3628 0/0:40,0,0:40:17:.:.:0,17,1014,17,1014,1014 0/0:44,0,0:44:82:.:.:0,82,1368,82,1368,1368 0/0:55,0,0:55:0:.:.:0,0,1019,0,1019,1019 0/0:57,0,0:57:99:.:.:0,120,1800,120,1800,1800 0/2:30,0,12:42:99:1|0:36282399_CAA_C:377,471,1921,0,1451,1410 0/0:20,0,0:20:1:.:.:0,1,528,1,528,528 0/0:40,0,0:40:0:.:.:0,0,901,0,901,901 0/0:45,0,0:45:67:.:.:0,67,1306,67,1306,1306 0/0:36,0,0:36:0:.:.:0,0,933,0,933,933 0/0:42,0,0:42:0:.:.:0,0,1013,0,1013,1013 0/0:43,0,0:43:75:.:.:0,75,1280,75,1280,1280 0/0:21,0,0:21:30:.:.:0,30,628,30,628,628 0/1:32,7,0:39:99:1|0:36282417_A_G:101,0,1416,197,1435,1632 0/0:35,0,0:35:0:.:.:0,0,896,0,896,896 0/0:51,0,0:51:52:.:.:0,52,1581,52,1581,1581 0/0:76,0,0:76:69:.:.:0,69,2058,69,2058,2058 0/0:77,0,0:77:0:.:.:0,0,1971,0,1971,1971 0/0:67,0,9:76:9:0|1:36282422_AGAAAGAAAGAAAG_A:0,210,3084,9,2884,2859 0/0:53,0,0:53:87:.:.:0,87,1626,87,1626,1626 0/0:153,0,0:153:0:.:.:0,0,3864,0,3864,3864 0/0:80,0,0:80:0:.:.:0,0,1763,0,1763,1763 0/0:38,0,0:38:0:.:.:0,0,812,0,812,812 0/0:59,0,0:59:0:.:.:0,0,1451,0,1451,1451 0/0:50,0,0:50:0:.:.:0,0,1324,0,1324,1324 0/2:35,0,13:48:99:1|0:36282417_A_G:199,318,2002,0,1683,1644 0/2:24,0,11:35:99:1|0:36282417_A_G:298,373,1479,0,1106,1074 0/0:13,0,0:13:0:.:.:0,0,310,0,310,310 0/0:49,0,0:49:99:.:.:0,99,1485,99,1485,1485 0/0:83,0,0:83:81:.:.:0,81,2358,81,2358,2358 0/0:46,0,0:46:99:.:.:0,102,1530,102,1530,1530 0/0:23,0,0:23:22:.:.:0,22,668,22,668,668 0/0:34,0,0:34:65:.:.:0,65,966,65,966,966 0/2:38,0,7:45:99:1|0:36282417_A_G:108,221,1774,0,1553,1533 0/0:92,0,0:92:44:.:.:0,44,2509,44,2509,2509 0/0:32,0,0:32:0:.:.:0,0,722,0,722,722 0/0:3,0,0:3:9:.:.:0,9,92,9,92,92 0/0:50,0,0:50:44:.:.:0,44,1349,44,1349,1349 0/0:63,0,0:63:20:.:.:0,20,1711,20,1711,1711 0/0:43,0,0:43:0:.:.:0,0,1064,0,1064,1064 0/0:22,0,0:22:29:.:.:0,29,671,29,671,671 0/0:24,0,2:26:43:1|0:36282399_CAA_C:0,72,1079,43,1050,1043 0/0:58,0,0:58:0:.:.:0,0,1427,0,1427,1427 1 36282440 . AG A 560.22 . AC=2;AF=0.010;AN=198;BaseQRankSum=-3.736e+00;ClippingRankSum=0.297;DP=5150;FS=0.000;InbreedingCoeff=-0.0133;MLEAC=2;MLEAF=0.010;MQ=51.65;MQRankSum=-3.770e+00;QD=6.29;ReadPosRankSum=-2.651e+00;SOR=0.138 GT:AD:DP:GQ:PGT:PID:PL 0/0:38,0:42:99:1|0:36282399_CA_C:0,114,1779 0/0:63,0:63:99:.:.:0,120,1800 0/0:81,0:81:99:.:.:0,120,1800 0/0:63,0:63:99:.:.:0,120,1800 0/0:61,0:61:99:.:.:0,120,1800 0/0:86,0:86:99:.:.:0,120,1800 0/0:30,0:35:89:1|0:36282417_A_G:0,89,1187 0/0:53,0:53:90:.:.:0,90,1350 0/0:51,0:51:99:.:.:0,102,1530 0/0:56,0:56:99:.:.:0,99,1485 0/0:40,0:40:72:.:.:0,72,1080 0/0:38,0:38:81:.:.:0,81,1215 ./.:0,0:0 0/0:47,0:47:99:.:.:0,99,1485 0/0:40,0:40:99:.:.:0,102,1530 0/0:57,0:57:99:.:.:0,102,1530 0/0:39,0:39:99:.:.:0,99,1485 0/0:67,0:67:99:.:.:0,120,1800 0/0:87,0:87:99:.:.:0,120,1800 0/0:26,0:26:51:.:.:0,51,765 0/0:45,0:45:93:.:.:0,93,1395 0/0:88,0:88:99:.:.:0,120,1800 0/0:32,0:32:84:.:.:0,84,1021 0/0:131,0:131:99:.:.:0,120,1800 0/0:30,0:30:57:.:.:0,57,855 0/0:65,0:65:99:.:.:0,120,1800 0/0:35,0:35:66:.:.:0,66,990 0/0:37,0:37:93:.:.:0,93,1395 0/0:34,0:34:63:.:.:0,63,945 0/0:46,0:46:96:.:.:0,96,1440 0/0:30,0:30:60:.:.:0,60,900 0/0:49,0:49:99:.:.:0,99,1485 0/0:48,0:48:99:.:.:0,99,1485 0/0:21,0:21:51:.:.:0,51,765 0/0:47,0:47:99:.:.:0,105,1575 0/0:105,0:105:99:.:.:0,120,1800 0/0:49,0:49:99:.:.:0,99,1485 0/0:51,0:51:84:.:.:0,84,1260 0/0:45,0:45:99:.:.:0,102,1530 0/0:33,0:33:60:.:.:0,60,900 0/0:36,0:36:90:.:.:0,90,1350 0/0:32,0:32:81:.:.:0,81,1215 0/0:33,0:33:60:.:.:0,60,900 0/0:31,0:31:60:.:.:0,60,900 0/0:22,0:27:66:1|0:36282417_A_G:0,66,1026 0/0:71,0:71:99:.:.:0,120,1800 0/0:51,0:51:99:.:.:0,99,1485 0/0:93,0:93:99:.:.:0,120,1800 0/0:41,0:41:72:.:.:0,72,1080 0/0:31,0:31:66:.:.:0,66,990 0/0:43,0:43:90:.:.:0,90,1350 0/0:44,0:44:99:.:.:0,102,1530 0/0:39,0:39:90:.:.:0,90,1350 0/0:33,0:34:99:1|0:36282399_CAAAAAAAAAAAAA_C:0,99,1528 0/0:13,0:13:39:.:.:0,39,452 0/0:1,0:1:3:.:.:0,3,32 0/0:82,0:82:99:.:.:0,120,1800 0/0:145,0:145:99:.:.:0,120,1800 0/0:44,0:44:90:.:.:0,90,1350 0/0:51,0:51:99:.:.:0,99,1485 0/0:58,0:58:99:.:.:0,108,1620 0/0:57,0:57:99:.:.:0,120,1800 0/1:34,13:47:99:1|0:36282399_CAA_C:352,0,1502 0/0:20,0:20:48:.:.:0,48,720 0/0:46,0:46:81:.:.:0,81,1215 0/0:49,0:49:99:.:.:0,102,1530 0/0:41,0:41:81:.:.:0,81,1215 0/0:43,0:43:99:.:.:0,99,1485 0/0:43,0:43:99:.:.:0,99,1435 0/0:25,0:25:72:.:.:0,72,1080 0/0:57,0:57:99:.:.:0,99,1485 0/0:42,0:42:89:.:.:0,89,1417 0/0:52,0:52:99:.:.:0,120,1800 0/0:79,0:79:99:.:.:0,120,1800 0/0:84,0:84:99:.:.:0,120,1800 0/0:102,0:102:99:.:.:0,120,1800 0/0:57,0:57:99:.:.:0,120,1800 0/0:165,0:165:99:.:.:0,120,1800 0/0:86,0:86:99:.:.:0,120,1800 0/0:40,0:40:81:.:.:0,81,1278 0/0:60,0:60:99:.:.:0,120,1800 0/0:52,0:52:99:.:.:0,117,1755 0/0:66,0:66:99:.:.:0,102,1530 0/1:32,10:42:99:1|0:36282417_A_G:238,0,1241 0/0:13,0:13:27:.:.:0,27,405 0/0:49,0:49:99:.:.:0,99,1485 0/0:87,0:87:99:.:.:0,120,1800 0/0:46,0:46:99:.:.:0,102,1530 0/0:25,0:25:57:.:.:0,57,855 0/0:37,0:37:81:.:.:0,81,1215 0/0:48,0:48:99:.:.:0,102,1530 0/0:98,0:98:99:.:.:0,120,1800 0/0:37,0:37:75:.:.:0,75,1125 0/0:3,0:3:3:.:.:0,3,45 0/0:55,0:55:99:.:.:0,114,1710 0/0:67,0:67:99:.:.:0,120,1800 0/0:46,0:46:99:.:.:0,99,1485 0/0:33,0:33:81:.:.:0,81,1215 0/0:24,0:26:72:1|0:36282399_CAA_C:0,72,1079 0/0:63,0:63:99:.:.:0,120,1800 1 36282441 . G A,* 1081.60 . AC=4,4;AF=0.020,0.020;AN=198;BaseQRankSum=-2.936e+00;ClippingRankSum=0.313;DP=4913;FS=0.000;InbreedingCoeff=0.0092;MLEAC=3,4;MLEAF=0.015,0.020;MQ=53.74;MQRankSum=-3.933e+00;QD=3.11;ReadPosRankSum=-1.942e+00;SOR=0.162 GT:AD:DP:GQ:PGT:PID:PL 0/0:38,0,4:42:47:1|0:36282399_CA_C:0,114,1779,47,1711,1698 0/0:60,0,0:60:24:.:.:0,24,1817,24,1817,1817 0/0:85,0,0:85:22:.:.:0,22,2475,22,2475,2475 0/0:61,0,0:61:56:.:.:0,56,1859,56,1859,1859 0/0:55,0,0:55:0:.:.:0,0,1451,0,1451,1451 0/1:61,15,0:76:99:1|0:36282417_A_G:130,0,2662,316,2700,3016 0/2:30,0,5:35:39:1|0:36282417_A_G:39,128,1226,0,1098,1081 0/0:24,0,0:31:73:.:.:0,73,649,73,649,649 0/0:48,0,0:48:18:.:.:0,18,1460,18,1460,1460 0/0:51,0,0:51:17:.:.:0,17,1408,17,1408,1408 0/0:37,0,0:37:0:.:.:0,0,941,0,941,941 0/0:34,0,0:34:0:.:.:0,0,1020,0,1020,1020 ./.:0,0,0:0 0/0:44,0,0:44:52:.:.:0,52,1286,52,1286,1286 0/0:40,0,0:40:99:.:.:0,102,1530,102,1530,1530 0/0:55,0,0:55:0:.:.:0,0,1145,0,1145,1145 0/0:31,0,0:31:93:.:.:0,93,1142,93,1142,1142 0/0:62,0,0:62:34:.:.:0,34,1764,34,1764,1764 0/0:85,0,0:85:85:.:.:0,85,2503,85,2503,2503 0/0:25,0,0:25:3:.:.:0,3,629,3,629,629 0/0:41,0,0:41:0:.:.:0,0,1119,0,1119,1119 0/0:86,0,0:86:22:.:.:0,22,2486,22,2486,2486 0/0:32,0,0:32:84:.:.:0,84,1021,84,1021,1021 0/0:127,0,0:127:29:.:.:0,29,3440,29,3440,3440 0/0:24,0,0:24:0:.:.:0,0,635,0,635,635 0/0:57,0,0:57:21:.:.:0,21,1620,21,1620,1620 0/1:26,3,0:29:3:1|0:36282417_A_G:3,0,1112,81,1120,1201 0/0:33,0,0:33:40:.:.:0,40,978,40,978,978 0/0:27,0,0:27:0:.:.:0,0,713,0,713,713 0/0:43,0,0:43:0:.:.:0,0,927,0,927,927 0/0:29,0,0:29:0:.:.:0,0,703,0,703,703 0/0:45,0,0:45:0:.:.:0,0,1192,0,1192,1192 0/0:43,0,0:43:71:.:.:0,71,1328,71,1328,1328 0/0:20,0,0:20:0:.:.:0,0,600,0,600,600 0/0:47,0,0:47:99:.:.:0,105,1575,105,1575,1575 0/0:103,0,0:103:93:.:.:0,93,3143,93,3143,3143 0/0:42,0,0:42:93:.:.:0,93,1395,93,1395,1395 0/0:48,0,0:48:0:.:.:0,0,769,0,769,769 0/0:43,0,0:43:0:.:.:0,0,1272,0,1272,1272 0/0:31,0,0:31:0:.:.:0,0,845,0,845,845 0/0:33,0,0:33:65:.:.:0,65,1117,65,1117,1117 0/0:31,0,0:31:0:.:.:0,0,896,0,896,896 0/0:33,0,0:33:0:.:.:0,0,792,0,792,792 0/0:31,0,0:31:0:.:.:0,0,514,0,514,514 0/2:22,0,5:27:17:1|0:36282417_A_G:17,83,1043,0,959,945 0/0:74,0,0:74:39:.:.:0,39,2170,39,2170,2170 0/0:51,0,0:51:29:.:.:0,29,1480,29,1480,1480 0/0:85,0,0:85:0:.:.:0,0,2042,0,2042,2042 0/0:40,0,0:40:0:.:.:0,0,594,0,594,594 0/0:30,0,0:30:0:.:.:0,0,867,0,867,867 0/0:42,0,0:42:18:.:.:0,18,1234,18,1234,1234 0/0:42,0,0:42:47:.:.:0,47,1301,47,1301,1301 0/0:35,0,0:35:12:.:.:0,12,1025,12,1025,1025 0/0:33,0,1:34:95:1|0:36282399_CAAAAAAAAAAAAA_C:0,99,1528,95,1525,1522 0/0:13,0,0:13:39:.:.:0,39,452,39,452,452 0/0:1,0,0:1:3:.:.:0,3,32,3,32,32 0/0:84,0,0:84:5:.:.:0,5,2291,5,2291,2291 0/0:132,0,0:132:41:.:.:0,41,3767,41,3767,3767 0/0:40,0,0:40:1:.:.:0,1,1004,1,1004,1004 0/0:50,0,0:50:56:.:.:0,56,1486,56,1486,1486 0/0:58,0,0:58:0:.:.:0,0,1188,0,1188,1188 0/0:68,0,0:68:45:.:.:0,45,2118,45,2118,2118 0/2:34,0,13:47:99:1|0:36282399_CAA_C:352,454,1994,0,1540,1502 0/0:21,0,0:21:11:.:.:0,11,630,11,630,630 0/0:40,0,0:40:28:.:.:0,28,1110,28,1110,1110 0/0:45,0,0:45:15:.:.:0,15,1348,15,1348,1348 0/0:38,0,0:38:0:.:.:0,0,984,0,984,984 0/0:44,0,0:44:0:.:.:0,0,1186,0,1186,1186 0/0:43,0,0:43:99:.:.:0,99,1435,99,1435,1435 0/0:25,0,0:25:72:.:.:0,72,1080,72,1080,1080 0/0:54,0,0:54:0:.:.:0,0,1355,0,1355,1355 0/0:39,0,0:39:0:.:.:0,0,975,0,975,975 0/0:50,0,0:50:84:.:.:0,84,1709,84,1709,1709 0/0:75,0,0:75:41:.:.:0,41,2241,41,2241,2241 0/0:93,0,0:93:0:.:.:0,0,2529,0,2529,2529 0/0:72,12,0:84:13:0|1:36282422_AGAAAGAAAGAAAG_A:0,13,2912,216,2940,3143 0/0:52,0,0:52:75:.:.:0,75,1757,75,1757,1757 0/0:151,0,0:151:90:.:.:0,90,4479,90,4479,4479 0/0:81,0,0:81:57:.:.:0,57,2397,57,2397,2397 0/0:36,0,0:36:0:.:.:0,0,920,0,920,920 0/0:59,0,0:59:0:.:.:0,0,1604,0,1604,1604 0/0:54,0,0:54:44:.:.:0,44,1654,44,1654,1654 0/1:38,13,0:51:99:1|0:36282417_A_G:163,0,1657,280,1691,1971 0/2:32,0,10:42:99:1|0:36282417_A_G:238,334,1604,0,1271,1241 0/0:12,0,0:12:0:.:.:0,0,317,0,317,317 0/0:49,0,0:49:99:.:.:0,99,1485,99,1485,1485 0/0:90,0,0:90:44:.:.:0,44,2623,44,2623,2623 0/0:46,0,0:46:99:.:.:0,102,1530,102,1530,1530 0/0:24,0,0:24:26:.:.:0,26,731,26,731,731 0/0:36,0,0:36:12:.:.:0,12,918,12,918,918 0/1:34,7,0:41:99:1|0:36282417_A_G:114,0,1441,216,1460,1676 0/0:94,0,0:94:79:.:.:0,79,2791,79,2791,2791 0/0:36,0,0:36:0:.:.:0,0,844,0,844,844 0/0:3,0,0:3:3:.:.:0,3,45,3,45,45 0/0:56,0,0:56:48:.:.:0,48,1722,48,1722,1722 0/0:71,0,0:71:51:.:.:0,51,2141,51,2141,2141 0/0:43,0,0:43:0:.:.:0,0,1190,0,1190,1190 0/0:32,0,0:32:43:.:.:0,43,1062,43,1062,1062 0/0:24,0,2:26:43:1|0:36282399_CAA_C:0,72,1079,43,1050,1043 0/0:68,0,0:68:7:.:.:0,7,1786,7,1786,1786 1 36288361 . A G 761.81 . AC=1;AF=5.000e-03;AN=200;BaseQRankSum=-2.218e+00;ClippingRankSum=0.694;DP=3719;FS=6.633;InbreedingCoeff=-0.0086;MLEAC=1;MLEAF=5.000e-03;MQ=57.70;MQRankSum=-3.420e-01;QD=15.24;ReadPosRankSum=-4.400e-01;SOR=2.303 GT:AD:DP:GQ:PL 0/0:40,0:40:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:36,0:36:99:0,99,1446 0/0:37,0:37:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:41,0:41:99:0,102,1530 0/0:43,0:43:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:39,0:39:99:0,104,1342 0/0:41,0:41:99:0,99,1485 0/0:36,0:36:99:0,99,1485 0/0:2,0:2:6:0,6,69 0/0:38,0:38:99:0,99,1485 0/0:36,0:36:99:0,99,1485 0/1:22,28:50:99:804,0,679 0/0:38,0:38:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:43,0:43:99:0,107,1546 0/0:31,0:31:90:0,90,1350 0/0:38,0:38:99:0,99,1485 0/0:36,0:36:99:0,99,1432 0/0:44,0:44:96:0,96,1440 0/0:34,0:34:99:0,102,1242 0/0:28,0:28:66:0,66,990 0/0:15,0:15:42:0,42,630 0/0:37,0:37:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:33,0:33:72:0,72,1080 0/0:36,0:36:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:42,0:42:99:0,105,1575 0/0:26,0:26:72:0,72,1080 0/0:44,0:44:99:0,99,1485 0/0:43,0:43:99:0,102,1472 0/0:38,0:38:99:0,99,1485 0/0:38,0:38:99:0,102,1530 0/0:37,0:37:90:0,90,1350 0/0:41,0:41:99:0,99,1485 0/0:28,0:28:45:0,45,983 0/0:25,0:25:60:0,60,900 0/0:39,0:39:99:0,102,1530 0/0:37,0:37:99:0,102,1530 0/0:32,0:32:72:0,72,1080 0/0:38,0:38:99:0,102,1530 0/0:37,0:37:99:0,99,1485 0/0:48,0:48:99:0,99,1485 0/0:37,0:37:99:0,99,1485 0/0:33,0:33:81:0,81,1215 0/0:42,0:42:99:0,99,1485 0/0:39,0:39:93:0,93,1395 0/0:41,0:41:99:0,102,1530 0/0:31,0:31:81:0,81,1215 0/0:37,0:37:99:0,99,1485 0/0:2,0:2:6:0,6,58 0/0:37,0:37:99:0,99,1485 0/0:38,0:38:99:0,99,1467 0/0:37,0:37:90:0,90,1350 0/0:38,0:38:90:0,90,1350 0/0:35,0:35:99:0,99,1485 0/0:42,0:42:99:0,101,1499 0/0:43,0:43:99:0,99,1485 0/0:37,0:37:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:37,0:37:93:0,93,1395 0/0:37,0:37:81:0,81,1215 0/0:42,0:42:99:0,99,1484 0/0:36,0:36:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:41,0:41:99:0,102,1521 0/0:39,0:39:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:41,0:41:99:0,102,1530 0/0:43,0:43:99:0,105,1575 0/0:38,0:38:93:0,93,1395 0/0:40,0:40:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:21,0:21:54:0,54,810 0/0:39,0:39:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:39,0:39:99:0,102,1530 0/0:28,0:28:72:0,72,1080 0/0:33,0:33:81:0,81,1215 0/0:38,0:38:99:0,99,1485 0/0:40,0:40:99:0,102,1530 0/0:44,0:44:90:0,90,1350 0/0:1,0:1:3:0,3,37 0/0:43,0:43:99:0,105,1575 0/0:42,0:42:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:40,0:40:99:0,102,1530 0/0:36,0:36:99:0,99,1436 0/0:46,0:46:99:0,114,1710 1 36288635 rs41312028 G A 6996.55 . AC=11;AF=0.056;AN=198;BaseQRankSum=-2.499e+00;ClippingRankSum=0.368;DB;DP=3052;FS=0.000;InbreedingCoeff=0.1290;MLEAC=11;MLEAF=0.056;MQ=60.00;MQRankSum=-4.810e-01;QD=16.35;ReadPosRankSum=0.171;SOR=0.832 GT:AD:DP:GQ:PL 0/0:22,0:22:57:0,57,855 0/0:40,0:40:99:0,99,1485 0/0:36,0:36:99:0,99,1446 0/0:39,0:39:75:0,75,1125 0/0:41,0:41:84:0,84,1260 0/0:41,0:41:99:0,102,1530 0/0:19,0:19:48:0,48,720 0/1:12,17:29:99:543,0,391 0/0:38,0:38:90:0,90,1350 0/0:39,0:39:99:0,104,1342 0/0:21,0:21:51:0,51,765 0/1:14,7:21:99:196,0,489 0/0:4,0:4:12:0,12,149 0/0:29,0:29:72:0,72,1080 0/0:31,0:31:72:0,72,1080 0/0:32,0:32:75:0,75,1125 0/0:35,0:35:81:0,81,1215 0/0:37,0:37:99:0,99,1485 0/0:46,0:46:99:0,99,1664 0/0:13,0:13:30:0,30,450 0/0:34,0:34:90:0,90,1350 0/0:36,0:36:99:0,99,1432 0/0:21,0:21:60:0,60,900 0/0:34,0:34:99:0,102,1242 0/0:25,0:25:60:0,60,900 0/0:6,0:6:15:0,15,225 0/0:27,0:27:72:0,72,1080 0/0:14,0:14:33:0,33,495 0/0:17,0:17:39:0,39,585 0/0:21,0:21:33:0,33,495 0/0:21,0:21:48:0,48,720 0/0:29,0:29:81:0,81,1215 0/0:31,0:31:75:0,75,1125 0/0:14,0:14:39:0,39,585 0/0:43,0:43:99:0,102,1530 0/0:43,0:43:99:0,102,1472 0/1:17,16:33:99:494,0,568 0/0:31,0:31:72:0,72,1080 0/0:22,0:22:60:0,60,900 0/0:28,0:28:72:0,72,1080 0/0:16,0:16:48:0,48,542 0/0:17,0:17:36:0,36,540 0/0:22,0:22:60:0,60,900 0/0:23,0:23:60:0,60,900 0/0:21,0:21:48:0,48,720 0/1:27,24:51:99:711,0,847 0/0:37,0:37:99:0,99,1485 0/0:48,0:48:99:0,99,1485 0/1:14,18:32:99:554,0,430 0/0:24,0:24:57:0,57,855 0/0:31,0:31:60:0,60,900 1/1:0,40:40:99:1497,120,0 0/0:29,0:29:72:0,72,1080 0/0:20,0:20:51:0,51,765 0/0:14,0:14:42:0,42,512 0/0:3,0:3:9:0,9,103 0/0:37,0:37:99:0,99,1485 0/0:38,0:38:99:0,99,1467 0/0:24,0:24:54:0,54,810 0/0:31,0:31:84:0,84,1260 0/0:35,0:35:99:0,99,1485 0/0:36,0:36:72:0,72,1080 0/0:34,0:34:81:0,81,1160 0/0:20,0:20:42:0,42,630 0/0:36,0:36:90:0,90,1350 0/0:23,0:23:60:0,60,900 0/0:29,0:29:66:0,66,990 0/0:33,0:33:90:0,90,1350 0/0:25,0:25:60:0,60,900 0/0:25,0:25:51:0,51,765 0/0:35,0:35:90:0,90,1350 0/1:10,12:22:99:375,0,302 0/0:31,0:31:78:0,78,1170 0/0:39,0:39:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:41,0:41:99:0,102,1521 0/1:26,19:45:99:572,0,868 0/1:71,62:133:99:1812,0,2208 0/0:41,0:41:99:0,102,1530 0/0:39,0:39:99:0,99,1485 0/1:9,13:22:99:413,0,282 0/0:40,0:40:99:0,99,1485 0/0:38,0:38:90:0,90,1350 0/0:40,0:40:90:0,90,1350 0/0:8,0:8:21:0,21,315 0/0:39,0:39:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:39,0:39:99:0,102,1530 0/0:23,0:23:54:0,54,810 0/0:14,0:14:25:0,25,470 0/0:28,0:28:72:0,72,1080 0/0:40,0:40:99:0,102,1530 0/0:20,0:20:45:0,45,675 ./.:0,0:0 0/0:24,0:24:60:0,60,900 0/0:42,0:42:99:0,99,1485 0/0:22,0:22:57:0,57,855 0/0:25,0:25:54:0,54,810 0/0:31,0:31:81:0,81,1215 0/0:46,0:46:99:0,114,1710 1 36291750 rs72659690 G A 2170.98 . AC=13;AF=0.070;AN=186;BaseQRankSum=1.34;ClippingRankSum=0.198;DB;DP=1024;FS=0.000;InbreedingCoeff=0.0208;MLEAC=13;MLEAF=0.070;MQ=58.33;MQRankSum=0.322;QD=15.85;ReadPosRankSum=-2.950e-01;SOR=0.260 GT:AD:DP:GQ:PL 0/0:9,0:9:0:0,0,179 0/0:9,0:9:21:0,21,315 0/0:12,0:12:27:0,27,405 0/0:9,0:9:18:0,18,270 0/0:5,0:5:15:0,15,180 0/1:6,8:14:99:255,0,179 0/0:10,0:10:24:0,24,360 0/0:7,0:7:15:0,15,225 0/0:13,0:13:33:0,33,495 0/0:8,0:8:18:0,18,270 0/0:6,0:6:15:0,15,225 0/0:8,0:8:18:0,18,270 ./.:0,0:0 0/0:4,0:4:12:0,12,141 0/0:10,0:10:24:0,24,360 0/1:9,5:14:99:140,0,276 0/0:4,0:4:6:0,6,90 0/0:8,0:8:24:0,24,294 0/0:13,0:13:33:0,33,495 0/0:3,0:3:9:0,9,97 0/0:7,0:7:15:0,15,225 0/0:10,0:10:27:0,27,405 0/0:5,0:5:15:0,15,182 0/0:23,0:23:42:0,42,630 0/0:8,0:8:15:0,15,225 0/0:4,0:4:9:0,9,135 0/0:5,0:5:0:0,0,101 0/0:10,0:10:27:0,27,405 0/0:4,0:4:9:0,9,135 ./.:8,0:8 0/0:6,0:6:0:0,0,69 0/0:9,0:9:24:0,24,360 0/0:6,0:6:15:0,15,225 0/0:6,0:6:18:0,18,237 0/0:6,0:6:18:0,18,240 0/0:21,0:21:42:0,42,630 0/0:8,0:8:24:0,24,287 0/0:9,0:9:27:0,27,344 0/1:5,3:8:96:96,0,170 0/0:11,0:11:30:0,30,450 0/0:4,0:4:6:0,6,90 0/0:9,0:9:21:0,21,315 0/0:11,0:11:21:0,21,315 0/0:7,0:7:18:0,18,270 0/1:6,8:14:99:262,0,180 0/0:16,0:16:39:0,39,585 0/0:7,0:7:18:0,18,270 0/0:28,0:28:48:0,48,942 0/1:2,5:7:50:178,0,50 1/1:0,5:5:15:184,15,0 0/0:8,0:8:21:0,21,315 0/0:8,0:8:21:0,21,315 0/0:15,0:15:39:0,39,585 0/1:6,5:11:99:161,0,192 0/0:3,0:3:9:0,9,106 ./.:0,0:0 0/0:25,0:25:63:0,63,945 0/0:16,0:16:36:0,36,540 0/0:2,0:2:6:0,6,67 0/0:18,0:18:42:0,42,630 0/0:15,0:15:39:0,39,585 0/0:8,0:8:21:0,21,315 0/0:8,0:8:0:0,0,67 0/0:7,0:7:21:0,21,244 0/0:9,0:9:21:0,21,315 0/0:4,0:4:12:0,12,136 0/0:9,0:9:27:0,27,333 0/0:11,0:11:27:0,27,405 0/0:7,0:7:21:0,21,224 0/0:4,0:4:12:0,12,132 0/1:6,9:15:99:304,0,176 0/0:10,0:10:21:0,21,315 0/0:5,0:5:12:0,12,180 0/0:20,0:20:48:0,48,720 0/0:15,0:15:33:0,33,495 0/1:7,5:12:99:141,0,216 0/0:14,0:14:24:0,24,360 0/0:37,0:37:63:0,63,945 0/0:16,0:16:36:0,36,540 0/0:11,0:11:30:0,30,450 0/0:4,0:4:12:0,12,146 0/0:14,0:14:39:0,39,585 0/1:10,4:14:99:114,0,340 0/0:8,0:8:0:0,0,209 ./.:0,0:0 0/0:39,0:39:99:0,99,1485 0/0:20,0:20:57:0,57,855 0/0:20,0:20:45:0,45,675 0/0:5,0:5:15:0,15,181 0/0:11,0:11:24:0,24,360 0/1:4,11:15:96:393,0,96 0/0:22,0:22:45:0,45,675 ./.:5,0:5 ./.:0,0:0 0/0:7,0:7:21:0,21,254 0/0:23,0:23:60:0,60,900 0/0:10,0:10:27:0,27,405 0/0:6,0:6:18:0,18,207 0/1:4,4:8:99:120,0,129 ./.:0,0:0 1 36292160 rs139074927 C T 2336.93 . AC=2;AF=0.010;AN=196;BaseQRankSum=-1.155e+00;ClippingRankSum=0.169;DB;DP=2930;FS=0.000;InbreedingCoeff=0.9166;MLEAC=2;MLEAF=0.010;MQ=56.64;MQRankSum=0.366;QD=32.46;ReadPosRankSum=-9.860e-01;SOR=5.728 GT:AD:DP:GQ:PL 0/0:25,0:25:57:0,57,855 0/0:41,0:41:99:0,99,1485 0/0:33,0:33:99:0,99,1195 0/0:32,0:32:81:0,81,1215 0/0:42,0:42:99:0,99,1485 0/0:39,0:39:99:0,105,1575 0/0:23,0:23:51:0,51,765 0/0:35,0:35:81:0,81,1215 0/0:34,0:34:75:0,75,1125 0/0:52,0:52:99:0,120,1800 0/0:28,0:28:60:0,60,900 0/0:12,0:12:33:0,33,495 ./.:0,0:0 0/0:25,0:25:63:0,63,945 0/0:41,0:41:99:0,99,1485 0/0:29,0:29:66:0,66,990 0/0:34,0:34:90:0,90,1350 0/0:39,0:39:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:6,0:6:18:0,18,184 0/0:39,0:39:90:0,90,1350 0/0:39,0:39:99:0,99,1485 0/0:22,0:22:57:0,57,855 0/0:56,0:56:99:0,120,1800 0/0:22,0:22:51:0,51,765 0/0:5,0:5:15:0,15,155 0/0:24,0:24:60:0,60,900 0/0:28,0:28:81:0,81,1215 0/0:16,0:16:39:0,39,585 0/0:24,0:24:60:0,60,900 0/0:28,0:28:81:0,81,1215 0/0:33,0:33:81:0,81,1215 0/0:35,0:35:81:0,81,1215 0/0:14,0:14:33:0,33,495 0/0:32,0:32:81:0,81,1215 0/0:35,0:35:99:0,102,1530 0/0:26,0:26:66:0,66,990 0/0:29,0:29:81:0,81,1215 0/0:25,0:25:72:0,72,1080 0/0:17,0:17:39:0,39,585 0/0:20,0:20:42:0,42,630 0/0:16,0:16:36:0,36,540 0/0:31,0:31:81:0,81,1215 0/0:22,0:22:57:0,57,855 0/0:26,0:26:51:0,51,765 0/0:36,0:36:99:0,102,1530 0/0:33,0:33:90:0,90,1350 0/0:37,0:37:99:0,99,1485 0/0:33,0:33:84:0,84,1260 0/0:21,0:21:48:0,48,720 0/0:35,0:35:81:0,81,1215 0/0:22,0:22:36:0,36,540 0/0:33,0:33:81:0,81,1215 0/0:31,0:31:81:0,81,1215 0/0:31,0:31:93:0,93,1210 ./.:1,0:1 0/0:39,0:39:99:0,99,1485 0/0:38,0:38:99:0,99,1391 0/0:25,0:25:57:0,57,855 0/0:29,0:29:71:0,71,1080 0/0:43,0:43:99:0,102,1520 0/0:38,0:38:99:0,99,1485 0/0:25,0:25:63:0,63,945 0/0:19,0:19:45:0,45,675 0/0:24,0:24:63:0,63,902 0/0:26,0:26:72:0,72,1080 0/0:34,0:34:87:0,87,1305 0/0:18,0:18:39:0,39,585 0/0:21,0:21:60:0,60,733 0/0:22,0:22:57:0,57,855 0/0:31,0:31:72:0,72,1080 0/0:39,0:39:84:0,84,1260 0/0:26,0:26:60:0,60,900 0/0:35,0:35:99:0,99,1485 0/0:39,0:39:99:0,102,1473 0/0:35,0:35:99:0,99,1485 0/0:36,0:36:90:0,90,1350 0/0:35,0:35:99:0,99,1485 0/0:38,0:38:99:0,102,1530 0/0:36,0:36:81:0,81,1215 0/0:21,0:21:51:0,51,765 0/0:23,0:23:51:0,51,765 0/0:39,0:39:99:0,99,1485 0/0:20,0:20:48:0,48,720 0/0:6,0:6:18:0,18,228 0/0:37,0:37:99:0,99,1485 1/1:3,69:72:99:2402,100,0 0/0:39,0:39:99:0,102,1479 0/0:35,0:35:99:0,102,1530 0/0:11,0:11:24:0,24,360 0/0:29,0:29:81:0,81,1215 0/0:44,0:44:99:0,105,1575 0/0:25,0:25:60:0,60,900 0/0:3,0:3:9:0,9,96 0/0:28,0:28:60:0,60,900 0/0:42,0:42:99:0,99,1485 0/0:31,0:31:63:0,63,945 0/0:22,0:22:60:0,60,900 0/0:26,0:26:54:0,54,810 0/0:36,0:36:99:0,99,1298 1 36292253 . G A 726.81 . AC=1;AF=5.000e-03;AN=200;BaseQRankSum=-3.158e+00;ClippingRankSum=-1.176e+00;DP=3790;FS=1.098;InbreedingCoeff=-0.0083;MLEAC=1;MLEAF=5.000e-03;MQ=59.52;MQRankSum=-9.080e-01;QD=15.14;ReadPosRankSum=2.72;SOR=0.527 GT:AD:DP:GQ:PL 0/0:38,0:38:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:33,0:33:99:0,99,1195 0/0:38,0:38:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:39,0:39:99:0,105,1575 0/0:45,0:45:99:0,102,1530 0/0:39,0:39:99:0,102,1530 0/0:43,0:43:99:0,99,1485 0/0:52,0:52:99:0,120,1800 0/0:40,0:40:99:0,102,1530 0/0:38,0:38:99:0,99,1485 0/0:4,0:4:12:0,12,143 0/0:36,0:36:99:0,99,1485 0/0:37,0:37:99:0,102,1365 0/0:36,0:36:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:42,0:42:99:0,105,1575 0/0:39,0:39:99:0,99,1485 0/0:13,0:13:30:0,30,450 0/0:38,0:38:99:0,99,1432 0/0:39,0:39:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:56,0:56:99:0,120,1800 0/0:40,0:40:99:0,99,1485 0/0:34,0:34:99:0,99,983 0/0:39,0:39:99:0,102,1530 0/0:41,0:41:99:0,99,1485 0/0:40,0:40:99:0,102,1530 0/0:49,0:49:99:0,102,1530 0/0:41,0:41:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:36,0:36:90:0,90,1350 0/0:41,0:41:99:0,99,1485 0/0:35,0:35:99:0,102,1530 0/0:44,0:44:99:0,99,1485 0/1:23,25:48:99:769,0,746 0/0:41,0:41:99:0,102,1530 0/0:41,0:41:99:0,102,1530 0/0:38,0:38:96:0,96,1440 0/0:24,0:24:60:0,60,900 0/0:39,0:39:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:38,0:38:99:0,102,1530 0/0:52,0:52:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:37,0:37:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:30,0:30:75:0,75,1125 0/0:37,0:37:99:0,99,1485 0/0:36,0:36:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:1,0:1:3:0,3,33 0/0:39,0:39:99:0,99,1485 0/0:38,0:38:99:0,99,1391 0/0:30,0:30:75:0,75,1125 0/0:32,0:32:81:0,81,1215 0/0:44,0:44:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:41,0:41:99:0,105,1575 0/0:35,0:35:69:0,69,1035 0/0:46,0:46:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:40,0:40:99:0,105,1575 0/0:40,0:40:99:0,105,1575 0/0:38,0:38:99:0,99,1485 0/0:35,0:35:99:0,99,1485 0/0:39,0:39:99:0,102,1473 0/0:35,0:35:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:35,0:35:99:0,99,1485 0/0:38,0:38:99:0,102,1530 0/0:41,0:41:99:0,99,1485 0/0:36,0:36:99:0,99,1485 0/0:43,0:43:99:0,108,1620 0/0:39,0:39:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:20,0:20:48:0,48,720 0/0:37,0:37:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:50,0:50:99:0,108,1620 0/0:39,0:39:99:0,99,1485 0/0:30,0:30:81:0,81,1215 0/0:37,0:37:99:0,99,1485 0/0:44,0:44:99:0,105,1575 0/0:37,0:37:99:0,99,1485 0/0:2,0:2:3:0,3,45 0/0:44,0:44:99:0,102,1530 0/0:42,0:42:99:0,99,1485 0/0:37,0:37:99:0,102,1530 0/0:40,0:40:99:0,99,1485 0/0:36,0:36:99:0,102,1530 0/0:36,0:36:99:0,99,1298 1 36292258 rs72659692 A G 20418.83 . AC=20;AF=0.100;AN=200;BaseQRankSum=3.31;ClippingRankSum=-1.330e-01;DB;DP=4438;FS=1.954;InbreedingCoeff=-0.1157;MLEAC=20;MLEAF=0.100;MQ=59.13;MQRankSum=-8.600e-02;QD=15.13;ReadPosRankSum=-1.290e-01;SOR=0.883 GT:AD:DP:GQ:PL 0/1:34,36:70:99:1192,0,1024 0/0:41,0:41:99:0,99,1485 0/0:33,0:33:99:0,99,1195 0/0:38,0:38:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/1:66,61:127:99:1886,0,2029 0/0:45,0:45:99:0,102,1530 0/0:39,0:39:99:0,102,1530 0/0:43,0:43:99:0,99,1485 0/0:52,0:52:99:0,120,1800 0/0:40,0:40:99:0,102,1530 0/0:38,0:38:99:0,99,1485 0/0:4,0:4:3:0,3,45 0/0:36,0:36:99:0,99,1485 0/0:37,0:37:99:0,102,1365 0/1:45,33:78:99:984,0,1444 0/0:39,0:39:99:0,99,1485 0/0:42,0:42:99:0,105,1575 0/0:39,0:39:99:0,99,1485 0/0:13,0:13:24:0,24,360 0/0:38,0:38:99:0,99,1432 0/0:39,0:39:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:56,0:56:99:0,120,1800 0/0:40,0:40:99:0,99,1485 0/0:34,0:34:99:0,99,983 0/1:29,33:62:99:1131,0,921 0/0:41,0:41:99:0,99,1485 0/0:40,0:40:99:0,102,1530 0/1:22,30:52:99:1024,0,619 0/1:22,23:45:99:735,0,672 0/0:40,0:40:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:35,0:35:99:0,102,1530 0/0:44,0:44:99:0,99,1485 0/0:48,0:48:99:0,105,1575 0/1:32,18:50:99:557,0,1052 0/0:41,0:41:99:0,102,1530 0/0:39,0:39:99:0,99,1485 0/0:24,0:24:60:0,60,900 0/0:39,0:39:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/1:20,29:49:99:990,0,607 0/0:52,0:52:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:37,0:37:99:0,99,1485 0/1:21,24:45:99:784,0,647 0/1:15,14:29:99:445,0,493 0/0:37,0:37:99:0,99,1485 0/0:42,0:42:93:0,93,1395 0/0:40,0:40:99:0,99,1485 0/1:22,27:49:99:902,0,691 0/0:41,0:41:99:0,99,1485 0/0:2,0:2:6:0,6,61 0/0:39,0:39:99:0,99,1485 0/0:38,0:38:99:0,99,1391 0/0:36,0:36:81:0,81,1215 0/0:39,0:39:90:0,90,1350 0/0:44,0:44:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/1:33,29:62:99:947,0,1000 0/0:42,0:42:93:0,93,1395 0/0:39,0:39:99:0,99,1485 0/0:41,0:41:99:0,105,1575 0/0:40,0:40:99:0,99,1485 0/0:46,0:46:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/1:40,29:69:99:873,0,1270 0/0:40,0:40:99:0,105,1575 0/0:38,0:38:99:0,99,1485 0/0:35,0:35:99:0,99,1485 0/0:39,0:39:99:0,102,1473 0/1:68,52:120:99:1645,0,2119 0/0:40,0:40:99:0,99,1485 0/0:35,0:35:99:0,99,1485 0/0:38,0:38:99:0,102,1530 0/0:41,0:41:99:0,99,1485 0/0:45,0:45:96:0,96,1440 0/0:43,0:43:99:0,108,1620 0/1:44,47:91:99:1533,0,1396 0/1:30,27:57:99:862,0,902 0/0:21,0:21:48:0,48,720 0/0:37,0:37:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:50,0:50:99:0,108,1620 0/0:39,0:39:99:0,99,1485 0/0:37,0:37:78:0,78,1170 0/1:31,28:59:99:825,0,1009 0/0:44,0:44:99:0,105,1575 0/1:21,21:42:99:702,0,654 0/0:3,0:3:6:0,6,90 0/0:44,0:44:99:0,102,1530 0/0:42,0:42:99:0,99,1485 0/0:37,0:37:99:0,102,1530 0/0:45,0:45:99:0,99,1485 0/1:58,53:111:99:1712,0,1853 0/1:47,36:83:99:923,0,1205 1 36292524 rs35096932 C G 8084.31 . AC=11;AF=0.056;AN=198;BaseQRankSum=2.68;ClippingRankSum=0.657;DB;DP=3220;FS=0.000;InbreedingCoeff=0.0915;MLEAC=10;MLEAF=0.051;MQ=55.57;MQRankSum=-5.000e-02;QD=15.20;ReadPosRankSum=0.566;SOR=0.755 GT:AD:DP:GQ:PL 0/0:36,0:36:81:0,81,1215 0/0:41,0:41:99:0,99,1485 0/0:33,0:33:99:0,99,1195 0/0:42,0:42:96:0,96,1440 0/0:30,0:30:84:0,84,1260 0/0:48,0:48:99:0,99,1485 0/1:12,23:35:99:731,0,314 0/0:24,0:24:50:0,50,768 0/0:40,0:40:90:0,90,1350 0/1:48,44:92:99:1324,0,1255 0/0:26,0:26:48:0,48,720 0/0:33,0:33:81:0,81,1215 ./.:0,0:0 0/0:13,0:13:30:0,30,450 0/0:35,0:35:90:0,90,1169 0/0:29,0:29:66:0,66,990 0/0:31,0:31:72:0,72,1080 0/0:35,0:35:72:0,72,1080 0/0:39,0:39:99:0,99,1485 0/0:15,0:15:12:0,12,462 0/0:24,0:24:60:0,60,900 0/1:28,21:49:99:604,0,768 0/0:23,0:23:48:0,48,720 0/0:56,0:56:99:0,120,1800 0/0:23,0:23:57:0,57,855 0/0:32,0:32:81:0,81,1215 0/0:27,0:27:57:0,57,855 0/0:25,0:25:57:0,57,855 0/0:36,0:36:75:0,75,1125 0/0:32,0:32:81:0,81,1215 0/0:26,0:26:48:0,48,720 0/0:24,0:24:60:0,60,900 0/0:28,0:28:57:0,57,855 0/0:10,0:10:24:0,24,360 0/0:36,0:36:90:0,90,1350 0/1:50,33:83:99:860,0,1347 0/0:26,0:26:57:0,57,855 0/0:31,0:31:60:0,60,900 0/0:30,0:30:69:0,69,1035 0/0:30,0:30:54:0,54,810 0/0:17,0:17:36:0,36,540 0/0:19,0:19:36:0,36,540 0/1:15,17:32:99:515,0,407 0/0:20,0:20:48:0,48,720 0/0:23,0:23:51:0,51,765 0/0:52,0:52:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/1:48,27:75:99:759,0,1353 0/0:39,0:39:81:0,81,1215 0/0:18,0:18:42:0,42,630 0/0:28,0:28:72:0,72,1080 0/0:19,0:19:39:0,39,585 0/0:23,0:23:45:0,45,675 0/0:31,0:31:72:0,72,1080 0/0:35,0:35:75:0,75,1125 0/0:5,0:5:12:0,12,180 0/0:39,0:39:99:0,99,1485 0/0:38,0:38:99:0,99,1391 0/0:27,0:27:60:0,60,876 0/0:21,0:21:48:0,48,720 0/0:47,0:47:92:0,92,1419 0/0:31,0:31:72:0,72,1080 0/0:39,0:39:78:0,78,1170 0/0:21,0:21:60:0,60,900 0/0:26,0:26:60:0,60,900 0/0:28,0:28:72:0,72,1080 0/0:25,0:25:69:0,69,1035 0/0:27,0:27:51:0,51,765 0/0:33,0:33:99:0,99,1192 0/1:11,14:25:99:409,0,260 0/0:30,0:30:72:0,72,1080 0/0:22,0:22:48:0,48,720 0/0:30,0:30:72:0,72,1080 0/0:35,0:35:99:0,99,1485 0/0:39,0:39:99:0,102,1473 0/0:41,0:41:99:0,99,1485 0/0:38,0:38:87:0,87,1305 0/0:35,0:35:99:0,99,1485 1/1:4,46:50:8:1533,8,0 0/0:25,0:25:66:0,66,990 0/0:21,0:21:54:0,54,810 0/0:29,0:29:63:0,63,945 0/0:39,0:39:99:0,99,1485 0/0:27,0:27:51:0,51,765 0/0:10,0:10:18:0,18,270 0/0:37,0:37:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:43,0:43:99:0,102,1530 0/0:13,0:13:24:0,24,360 0/0:21,0:21:48:0,48,720 0/0:35,0:35:63:0,63,945 0/1:37,38:75:99:1152,0,965 0/0:20,0:20:48:0,48,720 0/0:1,0:1:3:0,3,36 0/0:42,0:42:90:0,90,1350 0/0:55,0:55:87:0,87,1668 0/0:22,0:22:51:0,51,765 0/1:5,11:16:99:359,0,127 0/0:54,0:54:99:0,102,1530 0/0:28,0:28:0:0,0,677 1 36292595 . G A 100.42 . AC=1;AF=5.102e-03;AN=196;BaseQRankSum=0.00;ClippingRankSum=-3.610e-01;DP=811;FS=0.000;InbreedingCoeff=-0.0334;MLEAC=1;MLEAF=5.102e-03;MQ=29.86;MQRankSum=0.00;QD=11.16;ReadPosRankSum=1.65;SOR=0.892 GT:AD:DP:GQ:PL 0/0:3,0:3:9:0,9,111 0/0:10,0:10:27:0,27,405 0/0:21,0:21:57:0,57,855 0/0:9,0:9:21:0,21,315 0/0:5,0:5:12:0,12,180 0/0:16,0:16:33:0,33,495 0/0:8,0:8:15:0,15,225 0/0:8,0:8:15:0,15,225 0/0:9,0:9:21:0,21,315 0/0:11,0:11:30:0,30,450 0/0:6,0:6:9:0,9,135 0/0:5,0:5:12:0,12,180 0/0:3,0:3:9:0,9,103 0/0:7,0:7:18:0,18,270 0/0:8,0:8:21:0,21,315 0/0:7,0:7:21:0,21,242 0/0:8,0:8:15:0,15,225 0/0:7,0:7:18:0,18,270 0/0:11,0:11:27:0,27,405 0/0:3,0:3:9:0,9,99 0/1:4,5:9:99:142,0,109 0/0:4,0:4:12:0,12,151 0/0:7,0:7:21:0,21,262 0/0:21,0:21:36:0,36,540 0/0:5,0:5:15:0,15,178 0/0:2,0:2:3:0,3,45 0/0:3,0:3:9:0,9,105 0/0:1,0:1:3:0,3,41 0/0:7,0:7:12:0,12,180 0/0:12,0:12:24:0,24,360 0/0:3,0:3:9:0,9,108 0/0:5,0:5:9:0,9,135 0/0:7,0:7:21:0,21,254 0/0:2,0:2:6:0,6,79 0/0:7,0:7:15:0,15,225 0/0:24,0:24:60:0,60,900 0/0:10,0:10:15:0,15,225 0/0:4,0:4:6:0,6,90 0/0:5,0:5:15:0,15,187 0/0:6,0:6:18:0,18,232 0/0:3,0:3:9:0,9,107 0/0:1,0:1:3:0,3,28 0/0:7,0:7:21:0,21,256 0/0:6,0:6:15:0,15,225 0/0:6,0:6:15:0,15,225 0/0:10,0:10:27:0,27,405 0/0:6,0:6:15:0,15,225 0/0:17,0:17:30:0,30,450 0/0:12,0:12:27:0,27,405 0/0:2,0:2:6:0,6,80 0/0:4,0:4:12:0,12,151 0/0:5,0:5:12:0,12,180 0/0:4,0:4:12:0,12,137 0/0:7,0:7:12:0,12,180 0/0:4,0:4:12:0,12,143 ./.:0,0:0 0/0:19,0:19:48:0,48,720 0/0:16,0:16:39:0,39,585 0/0:3,0:3:9:0,9,103 0/0:6,0:6:15:0,15,225 0/0:13,0:13:27:0,27,405 0/0:8,0:8:21:0,21,315 0/0:10,0:10:27:0,27,405 0/0:10,0:10:24:0,24,360 0/0:7,0:7:15:0,15,225 0/0:7,0:7:21:0,21,264 0/0:11,0:11:27:0,27,405 0/0:8,0:8:18:0,18,270 0/0:8,0:8:18:0,18,270 0/0:2,0:2:6:0,6,65 0/0:9,0:9:24:0,24,360 0/0:7,0:7:21:0,21,260 0/0:3,0:3:6:0,6,90 0/0:9,0:9:21:0,21,315 0/0:7,0:7:15:0,15,225 0/0:19,0:19:54:0,54,810 0/0:11,0:11:24:0,24,360 0/0:37,0:37:76:0,76,1287 0/0:19,0:19:51:0,51,765 0/0:6,0:6:15:0,15,225 0/0:6,0:6:18:0,18,223 0/0:10,0:10:21:0,21,315 0/0:5,0:5:15:0,15,192 0/0:7,0:7:18:0,18,270 0/0:2,0:2:6:0,6,68 0/0:24,0:24:48:0,48,720 0/0:20,0:20:45:0,45,675 0/0:3,0:3:9:0,9,109 0/0:8,0:8:12:0,12,180 0/0:2,0:2:6:0,6,60 0/0:13,0:13:36:0,36,540 0/0:12,0:12:33:0,33,495 0/0:5,0:5:12:0,12,180 ./.:0,0:0 0/0:7,0:7:15:0,15,225 0/0:8,0:8:15:0,15,225 0/0:7,0:7:18:0,18,270 0/0:3,0:3:9:0,9,101 0/0:10,0:10:24:0,24,360 0/0:1,0:1:3:0,3,37 1 36298348 rs963879 G C 1248.27 . AC=4;AF=0.021;AN=194;BaseQRankSum=1.11;ClippingRankSum=0.674;DB;DP=2360;FS=0.000;InbreedingCoeff=-0.0227;MLEAC=4;MLEAF=0.021;MQ=60.00;MQRankSum=-1.500e-02;QD=14.51;ReadPosRankSum=1.53;SOR=0.649 GT:AD:DP:GQ:PL 0/0:20,0:20:24:0,24,656 0/0:35,0:35:75:0,75,1125 0/0:40,0:40:81:0,81,1215 0/0:28,0:28:72:0,72,1080 0/0:35,0:35:87:0,87,1305 0/0:51,0:51:93:0,93,1395 0/0:27,0:27:63:0,63,945 0/0:21,0:21:42:0,42,630 0/0:25,0:25:39:0,39,585 0/0:41,0:41:99:0,99,1485 0/0:13,0:13:30:0,30,450 0/0:12,0:12:36:0,36,431 ./.:0,0:0 0/0:35,0:35:66:0,66,990 0/0:19,0:19:33:0,33,495 0/0:30,0:30:60:0,60,900 0/0:14,0:14:27:0,27,405 0/0:32,0:32:81:0,81,1215 0/0:35,0:35:72:0,72,1080 0/0:8,0:8:24:0,24,268 0/0:39,0:39:99:0,102,1530 0/0:34,0:34:66:0,66,990 0/0:18,0:18:48:0,48,720 0/0:57,0:57:99:0,102,1530 0/0:13,0:13:27:0,27,405 0/0:2,0:2:6:0,6,61 0/0:17,0:17:48:0,48,720 0/0:21,0:21:54:0,54,810 0/0:28,0:28:51:0,51,765 0/0:11,0:11:21:0,21,315 0/0:19,0:19:42:0,42,630 0/0:22,0:22:42:0,42,630 0/0:26,0:26:60:0,60,900 0/0:17,0:17:30:0,30,450 0/0:27,0:27:54:0,54,810 0/0:38,0:38:99:0,99,1485 0/0:19,0:19:36:0,36,540 0/0:14,0:14:36:0,36,540 0/0:15,0:15:30:0,30,450 0/0:19,0:19:48:0,48,720 0/0:11,0:11:21:0,21,315 0/0:8,0:8:21:0,21,315 0/0:25,0:25:60:0,60,900 0/0:18,0:18:45:0,45,675 0/0:21,0:21:51:0,51,765 0/0:40,0:40:84:0,84,1260 0/0:35,0:35:63:0,63,945 0/0:46,0:46:99:0,102,1530 0/0:19,0:19:48:0,48,720 0/0:16,0:16:36:0,36,540 0/0:27,0:27:60:0,60,900 0/0:10,0:10:27:0,27,405 0/0:15,0:15:39:0,39,585 0/1:9,8:17:99:269,0,296 0/0:35,0:35:99:0,102,1303 ./.:0,0:0 0/0:46,0:46:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:13,0:13:30:0,30,450 0/0:20,0:20:42:0,42,630 0/0:31,0:31:51:0,51,1053 0/0:23,0:23:57:0,57,855 0/0:15,0:15:30:0,30,450 0/0:11,0:11:30:0,30,450 0/0:12,0:12:33:0,33,495 0/0:17,0:17:42:0,42,630 0/0:19,0:19:51:0,51,765 0/0:12,0:12:36:0,36,431 0/0:22,0:22:57:0,57,855 0/0:20,0:20:54:0,54,810 0/0:22,0:22:39:0,39,585 0/0:20,0:20:54:0,54,810 0/0:18,0:18:48:0,48,720 0/0:29,0:29:66:0,66,990 0/0:39,0:39:87:0,87,1305 0/0:40,0:40:99:0,99,1485 0/0:27,0:27:69:0,69,1035 0/0:45,0:45:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:21,0:21:45:0,45,675 0/0:7,0:7:15:0,15,225 0/0:31,0:31:66:0,66,990 0/0:21,0:21:39:0,39,585 0/0:19,0:19:57:0,57,737 0/0:9,0:9:24:0,24,360 0/0:46,0:46:99:0,102,1530 0/0:37,0:37:90:0,90,1350 0/1:21,16:37:99:469,0,701 0/1:9,8:17:99:252,0,299 0/0:9,0:9:15:0,15,225 0/0:23,0:23:57:0,57,855 0/0:47,0:47:99:0,99,1485 0/1:5,10:15:99:346,0,145 ./.:0,0:0 0/0:21,0:21:60:0,60,830 0/0:33,0:33:84:0,84,1260 0/0:18,0:18:42:0,42,630 0/0:12,0:12:30:0,30,450 0/0:17,0:17:42:0,42,630 0/0:16,0:16:39:0,39,585 1 36301803 rs72659694 G A 244.42 . AC=2;AF=0.013;AN=152;BaseQRankSum=1.30;ClippingRankSum=1.22;DB;DP=351;FS=0.000;InbreedingCoeff=-0.0963;MLEAC=2;MLEAF=0.013;MQ=60.00;MQRankSum=0.937;QD=16.29;ReadPosRankSum=0.550;SOR=1.112 GT:AD:DP:GQ:PL ./.:3,0:3 0/0:3,0:3:9:0,9,94 0/0:7,0:7:18:0,18,270 ./.:0,0:0 0/0:1,0:1:3:0,3,38 0/0:7,0:7:18:0,18,270 ./.:0,0:0 ./.:0,0:0 0/0:5,0:5:6:0,6,90 0/0:1,0:1:3:0,3,29 0/0:4,0:4:9:0,9,135 0/0:3,0:3:9:0,9,116 ./.:0,0:0 0/0:4,0:4:9:0,9,135 0/0:3,0:3:6:0,6,90 0/1:3,5:8:86:164,0,86 0/0:4,0:4:12:0,12,157 0/0:3,0:3:6:0,6,90 ./.:0,0:0 ./.:0,0:0 0/0:2,0:2:6:0,6,70 0/0:4,0:4:9:0,9,135 0/0:3,0:3:6:0,6,90 0/0:2,0:2:6:0,6,66 ./.:2,0:2 ./.:0,0:0 ./.:2,0:2 ./.:0,0:0 0/0:1,0:1:3:0,3,37 ./.:1,0:1 ./.:0,0:0 0/0:6,0:6:18:0,18,219 0/0:5,0:5:12:0,12,180 0/0:3,0:3:9:0,9,91 0/0:5,0:5:15:0,15,185 0/0:4,0:4:9:0,9,135 0/0:3,0:3:9:0,9,103 0/0:3,0:3:9:0,9,109 ./.:3,0:3 0/0:6,0:6:15:0,15,225 0/0:2,0:2:6:0,6,66 0/0:2,0:2:6:0,6,79 0/0:3,0:3:9:0,9,103 0/0:3,0:3:9:0,9,94 0/0:3,0:3:0:0,0,41 0/0:9,0:9:27:0,27,307 0/0:9,0:9:21:0,21,315 0/0:3,0:3:9:0,9,96 0/0:4,0:4:0:0,0,16 ./.:2,0:2 0/0:5,0:5:12:0,12,180 0/0:7,0:7:15:0,15,225 0/0:4,0:4:12:0,12,142 ./.:5,0:5 0/0:2,0:2:6:0,6,69 ./.:0,0:0 0/0:10,0:10:27:0,27,405 0/0:10,0:10:21:0,21,315 0/0:1,0:1:3:0,3,35 0/0:5,0:5:15:0,15,178 0/0:3,0:3:6:0,6,90 0/0:4,0:4:12:0,12,139 0/0:6,0:6:0:0,0,148 0/0:3,0:3:9:0,9,113 0/0:3,0:3:9:0,9,108 0/0:4,0:4:9:0,9,135 0/0:5,0:5:15:0,15,194 0/0:2,0:2:6:0,6,70 0/0:2,0:2:6:0,6,76 0/0:2,0:2:6:0,6,61 ./.:4,0:4 0/0:8,0:8:24:0,24,294 0/0:3,0:3:9:0,9,105 0/0:9,0:9:24:0,24,360 0/0:4,0:4:9:0,9,135 ./.:8,0:8 0/0:1,0:1:3:0,3,39 0/0:8,0:8:21:0,21,315 0/0:10,0:10:24:0,24,360 0/0:3,0:3:6:0,6,90 ./.:0,0:0 0/0:2,0:2:3:0,3,45 0/0:3,0:3:0:0,0,29 ./.:0,0:0 0/0:1,0:1:3:0,3,34 0/0:12,0:12:30:0,30,450 0/0:3,0:3:9:0,9,91 0/0:3,0:3:9:0,9,100 0/0:1,0:1:3:0,3,35 0/0:1,0:1:3:0,3,28 0/1:3,4:7:86:134,0,86 0/0:7,0:7:21:0,21,240 ./.:1,0:1 ./.:0,0:0 0/0:3,0:3:9:0,9,108 0/0:6,0:6:15:0,15,225 0/0:1,0:1:3:0,3,32 0/0:2,0:2:6:0,6,74 0/0:6,0:6:0:0,0,100 ./.:0,0:0 1 36307120 rs41308341 G A 14843.85 . AC=13;AF=0.065;AN=200;BaseQRankSum=-2.303e+00;ClippingRankSum=-1.000e-01;DB;DP=4501;FS=1.768;InbreedingCoeff=0.0848;MLEAC=13;MLEAF=0.065;MQ=59.25;MQRankSum=0.851;QD=16.77;ReadPosRankSum=0.710;SOR=0.859 GT:AD:DP:GQ:PL 0/1:29,40:69:99:1184,0,854 0/0:40,0:40:99:0,105,1575 0/0:36,0:36:99:0,102,1530 0/1:45,43:88:99:1272,0,1423 0/0:44,0:44:99:0,102,1530 0/0:59,0:59:99:0,105,1800 0/0:46,0:46:99:0,99,1485 0/0:39,0:39:99:0,99,1448 0/0:43,0:43:99:0,102,1530 0/0:43,0:43:99:0,99,1360 0/0:45,0:45:99:0,99,1485 0/0:32,0:32:75:0,75,1125 0/0:3,0:3:6:0,6,90 0/0:42,0:42:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:44,0:44:99:0,102,1530 0/0:40,0:40:99:0,102,1530 0/1:50,47:97:99:1358,0,1522 0/0:33,0:33:72:0,72,1080 0/1:44,43:87:99:1349,0,1393 0/1:59,51:110:99:1431,0,1839 0/0:39,0:39:99:0,99,1485 0/0:36,0:36:99:0,99,1485 0/1:24,25:49:99:659,0,770 0/1:21,25:46:99:627,0,536 0/0:40,0:40:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:45,0:45:99:0,100,1530 0/0:44,0:44:99:0,99,1485 0/0:42,0:42:90:0,90,1350 0/0:47,0:47:93:0,93,1395 0/0:45,0:45:99:0,99,1485 0/0:39,0:39:96:0,96,1440 0/0:42,0:42:99:0,99,1485 0/0:43,0:43:99:0,105,1575 0/0:44,0:44:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:39,0:39:72:0,72,1080 0/0:43,0:43:99:0,99,1485 0/0:31,0:31:72:0,72,1080 0/0:30,0:30:72:0,72,1024 0/0:41,0:41:99:0,99,1485 0/0:38,0:38:99:0,99,1482 0/1:17,18:35:99:568,0,549 0/0:46,0:46:99:0,108,1620 0/0:44,0:44:99:0,99,1485 0/0:35,0:35:99:0,99,1485 0/0:36,0:36:99:0,99,1413 0/0:43,0:43:90:0,90,1350 0/0:46,0:46:96:0,96,1440 0/0:45,0:45:99:0,102,1575 0/0:42,0:42:99:0,99,1485 0/0:40,0:40:99:0,102,1530 0/0:41,0:41:99:0,99,1485 0/0:3,0:3:6:0,6,90 0/0:35,0:35:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:36,0:36:96:0,96,1440 0/0:40,0:40:99:0,99,1485 0/0:85,0:85:80:0,80,2750 0/0:43,0:43:99:0,105,1575 0/0:39,0:39:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:37,0:37:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:44,0:44:93:0,93,1395 0/0:43,0:43:99:0,99,1485 0/0:47,0:47:99:0,102,1530 0/0:43,0:43:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:55,0:55:99:0,108,1620 0/0:43,0:43:99:0,99,1485 0/0:63,0:63:99:0,120,1800 0/0:45,0:45:99:0,99,1485 0/0:36,0:36:99:0,99,1316 0/0:49,0:49:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:24,0:24:60:0,60,900 0/0:44,0:44:99:0,102,1530 0/0:45,0:45:99:0,99,1485 0/0:44,0:44:99:0,105,1575 0/1:11,9:20:99:272,0,356 0/0:34,0:34:99:0,99,1426 1/1:2,106:108:99:3795,258,0 0/0:50,0:50:99:0,102,1530 0/0:37,0:37:75:0,75,1125 0/1:10,21:31:99:668,0,291 0/0:45,0:45:99:0,99,1485 0/1:82,63:145:99:1849,0,2636 0/0:40,0:40:90:0,90,1350 0/0:2,0:2:6:0,6,63 0/0:41,0:41:99:0,102,1530 0/0:38,0:38:99:0,99,1481 0/0:43,0:43:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:42,0:42:99:0,102,1251 1 36307412 rs57491416 CATAT CAT,C 7650.49 . AC=37,8;AF=0.189,0.041;AN=196;BaseQRankSum=0.00;ClippingRankSum=0.00;DB;DP=1889;FS=0.000;InbreedingCoeff=0.2682;MLEAC=51,10;MLEAF=0.260,0.051;MQ=59.93;MQRankSum=0.480;QD=25.00;ReadPosRankSum=0.406;SOR=3.611 GT:AD:DP:GQ:PL 1/1:1,5,0:6:9:158,9,0,160,15,167 0/1:1,5,0:6:15:150,0,15,153,30,184 0/1:3,11,0:14:58:324,0,58,333,91,425 0/2:3,0,3:6:99:111,120,251,0,131,121 0/0:21,0,0:21:0:0,0,346,0,346,346 0/1:2,7,0:9:41:186,0,41,192,63,255 0/0:17,0,0:17:0:0,0,427,0,427,427 0/0:21,0,0:21:0:0,0,295,0,295,295 1/1:0,9,0:9:27:293,27,0,293,27,293 1/2:4,14,6:24:47:473,47,108,296,0,653 ./.:7,0,0:7 0/0:8,0,0:8:0:0,0,57,0,57,57 0/0:2,0,0:2:3:0,3,45,3,45,45 0/1:1,4,0:5:18:119,0,18,122,30,152 0/0:9,0,0:9:0:0,0,196,0,196,196 0/0:17,0,0:17:0:0,0,442,0,442,442 0/0:10,0,0:10:0:0,0,61,0,61,61 0/0:20,0,0:20:0:0,0,495,0,495,495 1/1:1,12,0:13:10:364,10,0,367,37,393 0/0:4,0,0:4:3:0,3,45,3,45,45 0/1:2,8,0:10:34:233,0,34,239,58,297 0/0:27,0,0:27:0:0,0,79,0,79,79 0/0:10,0,0:10:0:0,0,132,0,132,132 1/2:0,13,4:17:85:534,134,85,378,0,375 0/0:6,0,0:6:0:0,0,146,0,146,146 0/0:3,0,0:3:3:0,3,45,3,45,45 0/0:9,0,0:9:0:0,0,226,0,226,226 0/0:14,0,0:14:0:0,0,128,0,128,128 0/0:13,0,0:13:0:0,0,202,0,202,202 0/0:17,0,0:17:0:0,0,382,0,382,382 0/0:6,0,0:6:6:0,6,90,6,90,90 0/0:14,0,0:14:0:0,0,201,0,201,201 0/0:19,0,0:19:0:0,0,325,0,325,325 0/0:12,0,0:12:0:0,0,130,0,130,130 0/1:2,8,0:10:36:234,0,36,240,61,301 0/0:45,0,0:45:0:0,0,509,0,509,509 0/0:13,0,0:13:0:0,0,228,0,228,228 0/0:13,0,0:13:0:0,0,232,0,232,232 0/0:17,0,0:17:0:0,0,400,0,400,400 0/0:8,0,0:8:0:0,0,145,0,145,145 0/0:10,0,0:10:0:0,0,137,0,137,137 0/0:6,0,0:6:0:0,0,145,0,145,145 0/0:13,0,0:13:0:0,0,38,0,38,38 0/0:11,0,0:11:0:0,0,140,0,140,140 0/0:15,0,0:15:14:0,14,490,14,490,490 1/1:0,8,0:8:25:266,25,0,266,25,266 0/0:12,0,0:12:0:0,0,30,0,30,30 0/0:36,0,0:36:0:0,0,1002,0,1002,1002 0/0:20,0,0:20:12:0,12,180,12,180,180 0/0:7,0,0:7:0:0,0,179,0,179,179 0/1:2,7,0:9:40:206,0,40,212,61,273 0/0:13,0,0:13:15:0,15,225,15,225,225 0/0:13,0,0:13:0:0,0,94,0,94,94 0/0:16,0,0:16:24:0,24,360,24,360,360 1/2:2,8,6:16:99:415,141,162,152,0,236 ./.:0,0,0:0 0/0:32,0,0:32:0:0,0,414,0,414,414 1/2:5,9,5:19:11:302,11,119,108,0,345 0/0:21,0,0:21:0:0,0,207,0,207,207 2/2:0,0,6:6:19:271,271,271,19,19,0 0/1:2,10,0:12:30:298,0,30,304,61,365 0/1:1,7,0:8:9:208,0,9,211,30,242 0/0:10,0,0:10:0:0,0,121,0,121,121 0/0:4,0,0:4:0:0,0,76,0,76,76 0/0:14,0,0:14:0:0,0,130,0,130,130 0/1:2,3,0:5:51:87,0,51,93,61,154 0/0:14,0,0:14:0:0,0,265,0,265,265 0/0:11,0,0:11:0:0,0,176,0,176,176 0/0:19,0,0:19:0:0,0,450,0,450,450 0/0:9,0,0:9:0:0,0,280,0,280,280 0/0:28,0,0:28:0:0,0,781,0,781,781 1/1:0,5,0:5:15:161,15,0,161,15,161 1/1:0,5,0:5:15:168,15,0,168,15,168 0/0:28,0,0:28:0:0,0,381,0,381,381 0/1:1,7,0:8:9:184,0,9,187,30,217 0/0:43,0,0:43:60:0,60,900,60,900,900 0/0:22,0,0:22:0:0,0,348,0,348,348 0/1:3,13,0:16:38:397,0,38,406,79,484 0/1:1,6,0:7:12:180,0,12,183,30,213 0/0:13,0,0:13:0:0,0,420,0,420,420 0/0:14,0,0:14:0:0,0,254,0,254,254 0/0:21,0,0:21:0:0,0,480,0,480,480 0/0:15,0,0:15:0:0,0,375,0,375,375 0/0:21,0,0:21:10:0,10,633,10,633,633 0/0:6,0,0:6:0:0,0,69,0,69,69 1/2:3,14,5:22:77:527,77,103,341,0,506 0/0:27,0,0:27:0:0,0,719,0,719,719 0/0:18,0,0:18:0:0,0,487,0,487,487 0/0:7,0,0:7:0:0,0,182,0,182,182 0/0:11,0,0:11:0:0,0,217,0,217,217 0/1:1,4,0:5:15:119,0,15,122,28,150 1/1:0,9,0:9:27:272,27,0,272,27,272 0/0:11,0,0:11:0:0,0,128,0,128,128 0/0:2,0,0:2:3:0,3,45,3,45,45 0/0:17,0,0:17:0:0,0,206,0,206,206 1/1:0,11,0:11:33:345,33,0,345,33,345 1/1:0,6,0:6:18:195,18,0,195,18,195 0/0:11,0,0:11:6:0,6,90,6,90,90 0/0:10,0,0:10:0:0,0,230,0,230,230 0/0:18,0,0:18:18:0,18,270,18,270,270 1 36307424 . TATATATATATATATAC T 1084.38 . AC=1;AF=5.263e-03;AN=190;BaseQRankSum=-3.238e+00;ClippingRankSum=-1.279e+00;DP=1423;FS=0.000;InbreedingCoeff=-0.0248;MLEAC=1;MLEAF=5.263e-03;MQ=46.09;MQRankSum=-2.358e+00;QD=30.12;ReadPosRankSum=1.69;SOR=2.712 GT:AD:DP:GQ:PL 0/0:9,0:9:24:0,24,360 0/0:10,0:10:18:0,18,270 0/0:35,0:35:84:0,84,1260 0/0:14,0:14:33:0,33,495 0/0:9,0:9:21:0,21,315 0/0:22,0:22:33:0,33,495 0/0:11,0:11:21:0,21,315 0/0:18,0:18:36:0,36,540 0/0:18,0:18:48:0,48,720 0/0:49,0:49:81:0,81,1215 0/0:8,0:8:21:0,21,315 0/0:9,0:9:21:0,21,315 ./.:0,0:0 0/0:14,0:14:24:0,24,360 0/0:7,0:7:12:0,12,180 0/0:7,0:7:15:0,15,225 0/0:12,0:12:30:0,30,450 0/0:17,0:17:27:0,27,405 0/0:31,0:31:63:0,63,945 0/0:2,0:2:6:0,6,68 0/0:21,0:21:42:0,42,630 0/0:23,0:23:51:0,51,765 0/0:7,0:7:18:0,18,270 0/0:28,0:28:60:0,60,900 0/0:3,0:3:9:0,9,108 ./.:0,0:0 0/0:2,0:2:6:0,6,69 0/0:11,0:11:24:0,24,360 0/0:9,0:9:24:0,24,360 0/0:11,0:11:21:0,21,315 ./.:1,0:1 0/0:11,0:11:24:0,24,360 0/0:10,0:10:30:0,30,355 0/0:6,0:6:12:0,12,180 0/0:17,0:17:42:0,42,630 0/0:37,0:37:72:0,72,1080 0/0:8,0:8:24:0,24,301 0/0:10,0:10:24:0,24,360 0/0:5,0:5:15:0,15,180 0/0:9,0:9:12:0,12,180 0/0:10,0:10:21:0,21,315 0/0:5,0:5:6:0,6,90 0/0:13,0:13:27:0,27,405 0/0:10,0:10:24:0,24,360 0/0:5,0:5:12:0,12,180 0/0:27,0:27:57:0,57,855 0/0:14,0:14:36:0,36,540 0/0:17,0:17:48:0,48,720 0/0:4,0:4:6:0,6,90 0/0:1,0:1:3:0,3,35 0/0:14,0:14:39:0,39,585 0/0:7,0:7:12:0,12,180 0/0:12,0:12:33:0,33,495 0/0:5,0:5:6:0,6,90 0/0:28,0:28:66:0,66,990 ./.:0,0:0 0/0:28,0:28:60:0,60,900 0/0:44,0:44:99:0,99,1485 0/0:17,0:17:27:0,27,405 0/0:11,0:11:21:0,21,315 0/0:26,0:26:57:0,57,855 0/0:22,0:22:51:0,51,765 0/0:7,0:7:21:0,21,261 0/0:2,0:2:3:0,3,45 0/0:15,0:15:27:0,27,405 0/0:16,0:16:36:0,36,540 0/0:12,0:12:18:0,18,270 0/0:10,0:10:21:0,21,315 0/0:11,0:11:18:0,18,270 0/0:6,0:6:3:0,3,45 0/0:19,0:19:15:0,15,225 0/0:23,0:23:45:0,45,675 0/0:16,0:16:24:0,24,360 0/0:24,0:24:60:0,60,900 0/0:17,0:17:42:0,42,630 0/1:7,29:36:99:1126,0,675 0/0:15,0:15:36:0,36,540 0/0:64,0:64:99:0,108,1620 0/0:26,0:26:50:0,50,885 0/0:7,0:7:18:0,18,270 0/0:6,0:6:15:0,15,225 0/0:14,0:14:24:0,24,360 0/0:9,0:9:18:0,18,270 0/0:12,0:12:12:0,12,180 0/0:5,0:5:12:0,12,180 0/0:44,0:44:99:0,102,1530 0/0:19,0:19:45:0,45,675 0/0:8,0:8:21:0,21,315 0/0:4,0:4:6:0,6,90 0/0:10,0:10:18:0,18,270 0/0:22,0:22:33:0,33,495 0/0:23,0:23:51:0,51,765 0/0:6,0:6:12:0,12,180 ./.:0,0:0 0/0:12,0:12:24:0,24,360 0/0:26,0:26:60:0,60,900 0/0:9,0:9:27:0,27,347 0/0:4,0:4:12:0,12,148 0/0:6,0:6:12:0,12,180 0/0:3,0:3:3:0,3,45 1 36315674 . T A 2978.79 . AC=1;AF=5.051e-03;AN=198;BaseQRankSum=-3.019e+00;ClippingRankSum=-2.660e-01;DP=4043;FS=5.535;InbreedingCoeff=-0.0064;MLEAC=1;MLEAF=5.051e-03;MQ=57.51;MQRankSum=0.896;QD=13.06;ReadPosRankSum=-8.090e-01;SOR=0.425 GT:AD:DP:GQ:PL 0/0:42,0:42:99:0,102,1530 0/0:36,0:36:99:0,99,1412 0/0:39,0:39:99:0,99,1400 0/0:37,0:37:99:0,102,1502 0/0:39,0:39:99:0,102,1530 0/0:39,0:39:99:0,99,1485 0/0:43,0:43:99:0,105,1575 0/0:42,0:42:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/1:120,108:228:99:3021,0,3608 0/0:36,0:36:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:5,0:5:12:0,12,180 0/0:40,0:40:99:0,102,1530 0/0:40,0:40:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:44,0:44:99:0,105,1575 0/0:38,0:38:99:0,99,1353 0/0:41,0:41:99:0,99,1485 0/0:15,0:15:33:0,33,495 0/0:41,0:41:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:35,0:35:99:0,99,1485 0/0:48,0:48:99:0,102,1530 0/0:46,0:46:90:0,90,1350 0/0:37,0:37:99:0,105,1514 0/0:42,0:42:99:0,99,1485 0/0:38,0:38:81:0,81,1215 0/0:38,0:38:99:0,102,1530 0/0:40,0:40:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:43,0:43:99:0,102,1530 0/0:44,0:44:99:0,99,1485 0/0:46,0:46:99:0,99,1485 0/0:46,0:46:99:0,99,1485 0/0:37,0:37:99:0,99,1421 0/0:39,0:39:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:45,0:45:93:0,93,1395 0/0:38,0:38:90:0,90,1350 0/0:34,0:34:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:38,0:38:93:0,93,1395 0/0:42,0:42:99:0,99,1485 0/0:41,0:41:99:0,102,1530 0/0:37,0:37:99:0,99,1485 0/0:39,0:39:99:0,103,1462 0/0:44,0:44:99:0,99,1485 0/0:39,0:39:99:0,102,1530 0/0:43,0:43:99:0,102,1530 0/0:38,0:38:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:43,0:43:99:0,102,1530 ./.:0,0:0 0/0:36,0:36:99:0,102,1530 0/0:45,0:45:99:0,99,1485 0/0:36,0:36:99:0,99,1379 0/0:41,0:41:99:0,99,1485 0/0:38,0:38:99:0,99,1383 0/0:41,0:41:99:0,99,1485 0/0:41,0:41:99:0,100,1530 0/0:40,0:40:99:0,99,1485 0/0:46,0:46:99:0,102,1530 0/0:41,0:41:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:37,0:37:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:37,0:37:99:0,99,1399 0/0:39,0:39:99:0,99,1447 0/0:41,0:41:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:38,0:38:99:0,99,1262 0/0:39,0:39:99:0,102,1530 0/0:35,0:35:99:0,99,1366 0/0:37,0:37:99:0,99,1485 0/0:38,0:38:99:0,102,1530 0/0:43,0:43:99:0,102,1530 0/0:36,0:36:90:0,90,1279 0/0:38,0:38:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:15,0:15:33:0,33,495 0/0:40,0:40:99:0,108,1620 0/0:43,0:43:99:0,105,1575 0/0:37,0:37:99:0,99,1485 0/0:36,0:36:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:2,0:2:6:0,6,71 0/0:41,0:41:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:36,0:36:90:0,90,1350 0/0:40,0:40:99:0,99,1485 0/0:49,0:49:99:0,105,1484 1 36315950 rs140190375 G A 1029.97 . AC=2;AF=0.010;AN=198;BaseQRankSum=-8.020e-01;ClippingRankSum=-7.610e-01;DB;DP=3289;FS=13.287;InbreedingCoeff=-0.0132;MLEAC=2;MLEAF=0.010;MQ=60.00;MQRankSum=0.729;QD=14.31;ReadPosRankSum=-2.540e-01;SOR=3.093 GT:AD:DP:GQ:PL 0/0:38,0:38:90:0,90,1350 0/0:36,0:36:99:0,99,1412 0/0:39,0:39:99:0,99,1400 0/0:37,0:37:99:0,102,1502 0/0:39,0:39:99:0,102,1530 0/0:39,0:39:99:0,99,1485 0/0:37,0:37:90:0,90,1350 0/1:15,21:36:99:597,0,458 0/0:41,0:41:81:0,81,1215 0/0:39,0:39:99:0,99,1485 0/0:16,0:16:36:0,36,540 0/0:19,0:19:45:0,45,675 ./.:0,0:0 0/0:39,0:39:75:0,75,1125 0/0:29,0:29:72:0,72,1080 0/0:35,0:35:76:0,76,1211 0/0:31,0:31:81:0,81,1215 0/0:38,0:38:99:0,99,1353 0/0:41,0:41:99:0,99,1485 0/0:10,0:10:24:0,24,360 0/0:41,0:41:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:28,0:28:81:0,81,1040 0/0:48,0:48:99:0,102,1530 0/0:18,0:18:45:0,45,675 0/0:18,0:18:45:0,45,675 0/0:29,0:29:60:0,60,900 0/0:24,0:24:60:0,60,900 0/0:24,0:24:60:0,60,900 0/0:31,0:31:75:0,75,1125 0/0:34,0:34:72:0,72,1080 0/0:39,0:39:90:0,90,1350 0/0:39,0:39:99:0,99,1372 0/0:22,0:22:51:0,51,765 0/0:43,0:43:90:0,90,1596 0/0:37,0:37:99:0,99,1421 0/1:19,17:36:99:492,0,619 0/0:37,0:37:99:0,99,1485 0/0:32,0:32:72:0,72,1080 0/0:32,0:32:63:0,63,945 0/0:15,0:15:39:0,39,585 0/0:22,0:22:60:0,60,900 0/0:42,0:42:99:0,99,1485 0/0:34,0:34:60:0,60,900 0/0:38,0:38:87:0,87,1305 0/0:41,0:41:99:0,102,1530 0/0:37,0:37:99:0,99,1485 0/0:39,0:39:99:0,103,1462 0/0:44,0:44:99:0,99,1485 0/0:26,0:26:60:0,60,900 0/0:40,0:40:81:0,81,1215 0/0:29,0:29:72:0,72,1080 0/0:42,0:42:81:0,81,1215 0/0:24,0:24:51:0,51,765 0/0:30,0:30:72:0,72,1080 0/0:1,0:1:3:0,3,29 0/0:36,0:36:99:0,102,1530 0/0:45,0:45:99:0,99,1485 0/0:23,0:23:60:0,60,900 0/0:30,0:30:72:0,72,1080 0/0:38,0:38:99:0,99,1383 0/0:42,0:42:99:0,102,1530 0/0:41,0:41:99:0,102,1530 0/0:21,0:21:44:0,44,730 0/0:45,0:45:90:0,90,1350 0/0:40,0:40:99:0,102,1530 0/0:32,0:32:63:0,63,945 0/0:20,0:20:48:0,48,720 0/0:29,0:29:60:0,60,900 0/0:33,0:33:81:0,81,1215 0/0:37,0:37:99:0,99,1399 0/0:30,0:30:63:0,63,945 0/0:41,0:41:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:38,0:38:99:0,99,1262 0/0:39,0:39:99:0,102,1530 0/0:35,0:35:99:0,99,1366 0/0:37,0:37:99:0,99,1485 0/0:47,0:47:99:0,99,1485 0/0:35,0:35:72:0,72,1080 0/0:30,0:30:75:0,75,1125 0/0:42,0:42:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:36,0:36:81:0,81,1215 0/0:8,0:8:15:0,15,225 0/0:40,0:40:99:0,108,1620 0/0:43,0:43:99:0,105,1575 0/0:37,0:37:99:0,99,1485 0/0:25,0:25:48:0,48,720 0/0:21,0:21:54:0,54,810 0/0:38,0:38:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:22,0:22:60:0,60,900 0/0:2,0:2:3:0,3,45 0/0:38,0:38:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:17,0:17:39:0,39,585 0/0:29,0:29:72:0,72,1080 0/0:40,0:40:99:0,99,1485 0/0:49,0:49:99:0,105,1484 1 36316304 rs4233204 G C 13951.79 . AC=100;AF=1.00;AN=100;DB;DP=544;FS=0.000;InbreedingCoeff=-0.0076;MLEAC=100;MLEAF=1.00;MQ=58.04;QD=30.83;SOR=11.838 GT:AD:DP:GQ:PL 1/1:0,10:10:30:374,30,0 1/1:0,10:10:30:399,30,0 ./.:7,0:7 ./.:4,0:4 1/1:0,7:7:21:277,21,0 ./.:5,0:5 ./.:3,0:3 1/1:0,5:5:15:186,15,0 ./.:3,0:3 1/1:0,7:7:21:242,21,0 ./.:3,0:3 1/1:0,5:5:15:193,15,0 ./.:2,0:2 ./.:4,0:4 1/1:0,5:5:15:187,15,0 ./.:6,0:6 ./.:4,0:4 ./.:2,0:2 ./.:3,0:3 ./.:2,0:2 ./.:4,0:4 ./.:5,0:5 1/1:0,8:8:24:265,24,0 1/1:0,16:16:48:609,48,0 ./.:1,0:1 1/1:0,9:9:27:327,27,0 1/1:0,6:6:18:236,18,0 ./.:1,0:1 ./.:1,0:1 ./.:3,0:3 1/1:0,9:9:27:351,27,0 1/1:0,8:8:24:296,24,0 ./.:3,0:3 ./.:2,0:2 ./.:2,0:2 1/1:0,12:12:36:444,36,0 1/1:0,6:6:181:272,21,0 1/1:0,7:7:21:269,21,0 1/1:0,4:4:12:162,12,0 ./.:5,0:5 ./.:1,0:1 1/1:0,4:4:12:155,12,0 ./.:4,0:4 ./.:2,0:2 1/1:0,9:9:27:318,27,0 1/1:0,10:10:30:399,30,0 1/1:0,8:8:24:294,24,0 ./.:2,0:2 ./.:2,0:2 ./.:1,0:1 1/1:0,6:6:18:237,18,0 ./.:4,0:4 1/1:0,6:6:18:219,18,0 1/1:0,4:4:12:161,12,0 ./.:0,0:0 1/1:0,7:7:21:264,21,0 1/1:0,12:12:36:470,36,0 1/1:0,7:7:21:257,21,0 1/1:0,6:6:18:233,18,0 ./.:3,0:3 1/1:0,6:6:18:237,18,0 ./.:3,0:3 ./.:4,0:4 1/1:0,5:5:15:174,15,0 ./.:5,0:5 1/1:0,7:7:21:264,21,0 1/1:0,7:7:21:264,21,0 1/1:0,7:7:21:231,21,0 1/1:0,6:6:18:219,18,0 1/1:0,9:9:27:325,27,0 1/1:0,4:4:12:153,12,0 1/1:0,9:9:27:352,27,0 1/1:0,6:6:18:234,18,0 ./.:6,0:6 ./.:8,0:8 ./.:3,0:3 1/1:0,14:14:42:511,42,0 1/1:0,6:6:18:222,18,0 ./.:7,0:7 ./.:3,0:3 ./.:3,0:3 1/1:0,6:6:18:227,18,0 1/1:0,6:6:18:239,18,0 ./.:1,0:1 1/1:0,18:18:54:658,54,0 ./.:9,0:9 ./.:6,0:6 ./.:2,0:2 ./.:4,0:4 1/1:0,5:5:15:190,15,0 ./.:5,0:5 ./.:3,0:3 ./.:0,0:0 1/1:0,6:6:18:229,18,0 1/1:0,8:8:24:299,24,0 ./.:5,0:5 1/1:0,5:5:15:204,15,0 1/1:0,6:6:18:235,18,0 1/1:0,5:5:15:173,15,0 1 36316381 . C CAAAAAAAAAAAAAAA,CAAAAAAAAAAAAAA 1159.62 . AC=1,3;AF=5.208e-03,0.016;AN=192;BaseQRankSum=1.47;ClippingRankSum=0.124;DP=3265;FS=0.000;InbreedingCoeff=0.1318;MLEAC=1,2;MLEAF=5.208e-03,0.010;MQ=30.77;MQRankSum=-1.362e+00;QD=30.52;ReadPosRankSum=1.63;SOR=0.229 GT:AD:DP:GQ:PL 0/0:38,0,0:38:0:0,0,945,0,945,945 0/1:5,16,0:21:37:431,0,37,449,86,535 0/0:54,0,0:54:0:0,0,995,0,995,995 0/0:52,0,0:52:1:0,1,1678,1,1678,1678 0/0:25,0,0:25:0:0,0,744,0,744,744 0/0:30,0,0:30:12:0,12,180,12,180,180 0/0:23,0,0:23:34:0,34,799,34,799,799 0/0:22,0,0:22:0:0,0,543,0,543,543 0/0:26,0,0:26:3:0,3,864,3,864,864 0/0:203,0,0:203:0:0,0,5745,0,5745,5745 0/0:19,0,0:19:0:0,0,517,0,517,517 0/0:30,0,0:30:0:0,0,869,0,869,869 ./.:0,0,0:0 0/0:27,0,0:27:0:0,0,656,0,656,656 0/0:19,0,0:19:20:0,20,653,20,653,653 0/0:16,0,0:16:63:0,63,802,63,802,802 0/0:16,0,0:16:0:0,0,410,0,410,410 0/0:31,0,0:31:0:0,0,718,0,718,718 0/0:36,0,0:36:0:0,0,1084,0,1084,1084 0/0:7,0,0:7:15:0,15,225,15,225,225 0/0:34,0,0:34:0:0,0,1042,0,1042,1042 0/0:41,0,0:41:0:0,0,1083,0,1083,1083 0/0:32,0,0:32:65:0,65,1146,65,1146,1146 0/0:64,0,0:64:0:0,0,1883,0,1883,1883 0/0:18,0,0:18:0:0,0,442,0,442,442 0/0:84,0,0:84:0:0,0,1944,0,1944,1944 0/0:24,0,0:24:0:0,0,736,0,736,736 0/0:28,0,0:28:48:0,48,1024,48,1024,1024 0/0:24,0,0:24:0:0,0,695,0,695,695 0/0:22,0,0:22:0:0,0,454,0,454,454 0/0:21,0,0:21:0:0,0,520,0,520,520 0/0:33,0,0:33:0:0,0,952,0,952,952 0/0:20,0,0:20:0:0,0,337,0,337,337 0/0:23,0,0:23:36:0,36,796,36,796,796 0/0:31,0,0:31:0:0,0,751,0,751,751 0/0:56,0,0:56:0:0,0,1128,0,1128,1128 0/0:25,0,0:25:0:0,0,667,0,667,667 0/0:24,0,0:24:0:0,0,754,0,754,754 0/0:32,0,0:32:0:0,0,939,0,939,939 0/0:22,0,0:22:24:0,24,360,24,360,360 0/0:20,0,0:20:0:0,0,515,0,515,515 ./.:17,0,0:17 0/0:20,0,0:20:0:0,0,380,0,380,380 0/0:17,0,0:17:0:0,0,290,0,290,290 2/2:0,0,5:5:20:202,203,204,20,21,0 0/0:39,0,0:39:0:0,0,786,0,786,786 0/0:47,0,0:47:3:0,3,1504,3,1504,1504 0/0:84,0,0:84:0:0,0,2333,0,2333,2333 0/0:26,0,0:26:0:0,0,547,0,547,547 0/0:23,0,0:23:0:0,0,520,0,520,520 0/0:28,0,0:28:0:0,0,682,0,682,682 0/0:35,0,0:35:0:0,0,962,0,962,962 0/0:22,0,0:22:0:0,0,562,0,562,562 0/2:3,0,9:12:91:211,221,341,0,120,91 0/0:46,0,0:51:99:0,136,1361,136,1361,1361 ./.:0,0,0:0 0/0:54,0,0:54:0:0,0,997,0,997,997 0/0:62,0,0:62:0:0,0,1574,0,1574,1574 0/0:10,0,0:10:0:0,0,289,0,289,289 0/0:33,0,0:33:0:0,0,691,0,691,691 0/0:35,0,0:35:0:0,0,974,0,974,974 0/0:26,0,0:26:0:0,0,749,0,749,749 0/0:25,0,0:25:0:0,0,799,0,799,799 0/0:18,0,0:18:0:0,0,316,0,316,316 0/0:30,0,0:30:0:0,0,653,0,653,653 0/0:26,0,0:26:0:0,0,763,0,763,763 0/0:18,0,0:18:0:0,0,419,0,419,419 0/0:18,0,0:18:18:0,18,606,18,606,606 0/0:22,0,0:22:0:0,0,575,0,575,575 0/0:15,0,0:15:0:0,0,313,0,313,313 0/0:23,0,0:23:0:0,0,555,0,555,555 0/0:19,0,0:19:0:0,0,588,0,588,588 0/0:42,0,0:42:0:0,0,1208,0,1208,1208 0/0:44,0,0:44:0:0,0,1157,0,1157,1157 0/0:41,0,0:41:0:0,0,1137,0,1137,1137 0/0:44,0,0:44:0:0,0,1074,0,1074,1074 0/0:33,0,0:33:0:0,0,920,0,920,920 0/0:118,0,0:118:0:0,0,3056,0,3056,3056 0/0:33,0,0:33:0:0,0,746,0,746,746 0/0:34,0,0:34:0:0,0,1034,0,1034,1034 0/0:20,0,0:20:0:0,0,391,0,391,391 0/0:31,0,0:31:0:0,0,606,0,606,606 0/0:27,0,0:27:0:0,0,697,0,697,697 0/0:23,0,0:23:0:0,0,531,0,531,531 0/0:8,0,0:8:0:0,0,155,0,155,155 0/0:78,0,0:78:0:0,0,1882,0,1882,1882 0/0:35,0,0:35:0:0,0,899,0,899,899 0/0:26,0,0:26:0:0,0,676,0,676,676 0/0:16,0,0:16:0:0,0,307,0,307,307 0/0:19,0,0:19:0:0,0,507,0,507,507 0/0:26,0,0:26:0:0,0,778,0,778,778 0/0:51,0,0:51:0:0,0,1355,0,1355,1355 0/0:20,0,0:20:0:0,0,518,0,518,518 ./.:0,0,0:0 0/0:43,0,0:43:0:0,0,1198,0,1198,1198 0/0:39,0,0:39:1:0,1,1309,1,1309,1309 0/0:23,0,0:23:0:0,0,658,0,658,658 0/0:16,0,0:16:0:0,0,296,0,296,296 0/0:47,0,0:47:0:0,0,1431,0,1431,1431 0/0:43,0,0:43:0:0,0,1130,0,1130,1130 1 36316395 rs186333410 A AAAAAAC,C 963.28 . AC=2,1;AF=0.010,5.051e-03;AN=198;BaseQRankSum=-2.960e-01;ClippingRankSum=-8.250e-01;DB;DP=4820;FS=0.000;InbreedingCoeff=-0.0124;MLEAC=2,1;MLEAF=0.010,5.051e-03;MQ=47.06;MQRankSum=-1.430e-01;QD=20.50;ReadPosRankSum=-8.950e-01;SOR=0.389 GT:AD:DP:GQ:PL 0/0:54,0,0:54:78:0,78,1170,78,1170,1170 0/0:72,0,0:72:99:0,99,1485,99,1485,1485 0/0:81,0,0:81:99:0,102,1530,102,1530,1530 0/0:70,0,0:70:90:0,90,1350,90,1350,1350 0/0:40,0,0:40:72:0,72,1080,72,1080,1080 0/0:61,0,0:61:90:0,90,1350,90,1350,1350 0/0:35,0,0:35:45:0,45,675,45,675,675 0/0:39,0,0:39:60:0,60,900,60,900,900 0/0:39,0,0:39:39:0,39,585,39,585,585 0/0:176,0,0:176:99:0,120,1800,120,1800,1800 0/1:6,5,0:11:99:263,0,172,282,202,483 0/0:42,0,0:42:60:0,60,900,60,900,900 0/0:1,0,0:1:3:0,3,30,3,30,30 0/0:40,0,0:40:60:0,60,900,60,900,900 0/0:35,0,0:35:54:0,54,810,54,810,810 0/2:15,0,11:26:99:555,292,870,0,379,417 0/0:28,0,0:28:42:0,42,630,42,630,630 0/0:54,0,0:54:99:0,102,1530,102,1530,1530 0/0:68,0,0:68:99:0,102,1530,102,1530,1530 0/0:16,0,0:16:27:0,27,405,27,405,405 0/0:51,0,0:51:81:0,81,1215,81,1215,1215 0/0:71,0,0:71:99:0,99,1485,99,1485,1485 0/0:50,0,0:50:72:0,72,1080,72,1080,1080 0/0:89,0,0:89:99:0,114,1710,114,1710,1710 0/0:28,0,0:28:42:0,42,630,42,630,630 0/0:97,0,0:97:99:0,102,1530,102,1530,1530 0/0:35,0,0:35:54:0,54,810,54,810,810 0/0:41,0,0:41:57:0,57,855,57,855,855 0/0:28,0,0:28:36:0,36,540,36,540,540 0/0:38,0,0:38:72:0,72,1080,72,1080,1080 0/0:32,0,0:32:42:0,42,630,42,630,630 0/0:39,0,0:39:57:0,57,855,57,855,855 0/0:38,0,0:38:63:0,63,945,63,945,945 0/0:33,0,0:33:57:0,57,855,57,855,855 0/0:52,0,0:52:81:0,81,1215,81,1215,1215 0/0:80,0,0:80:99:0,103,1620,103,1620,1620 0/0:39,0,0:39:72:0,72,1080,72,1080,1080 0/0:44,0,0:44:75:0,75,1125,75,1125,1125 0/0:39,0,0:39:54:0,54,810,54,810,810 0/0:38,0,0:38:72:0,72,1080,72,1080,1080 0/0:36,0,0:36:51:0,51,765,51,765,765 0/0:22,0,0:22:15:0,15,225,15,225,225 0/0:30,0,0:30:51:0,51,765,51,765,765 0/0:23,0,0:23:42:0,42,630,42,630,630 0/0:29,0,0:29:54:0,54,810,54,810,810 0/0:71,0,0:71:99:0,102,1530,102,1530,1530 0/0:57,0,0:57:60:0,60,900,60,900,900 0/0:101,0,0:101:99:0,102,1530,102,1530,1530 0/0:45,0,0:45:75:0,75,1125,75,1125,1125 0/0:32,0,0:32:54:0,54,810,54,810,810 0/0:46,0,0:46:81:0,81,1215,81,1215,1215 0/0:44,0,0:44:60:0,60,900,60,900,900 0/0:31,0,0:31:51:0,51,765,51,765,765 0/0:53,0,0:53:81:0,81,1215,81,1215,1215 0/0:92,0,0:92:75:0,75,1125,75,1125,1125 ./.:0,0,0:0 0/0:88,0,0:88:99:0,102,1530,102,1530,1530 0/0:95,0,0:95:99:0,99,1485,99,1485,1485 0/0:18,0,0:18:24:0,24,360,24,360,360 0/0:47,0,0:47:81:0,81,1215,81,1215,1215 0/0:56,0,0:56:60:0,60,900,60,900,900 0/0:39,0,0:39:60:0,60,900,60,900,900 0/0:41,0,0:41:54:0,54,810,54,810,810 0/0:21,0,0:21:39:0,39,585,39,585,585 0/0:42,0,0:42:60:0,60,900,60,900,900 0/0:42,0,0:42:69:0,69,1035,69,1035,1035 0/0:32,0,0:32:51:0,51,765,51,765,765 0/0:41,0,0:41:81:0,81,1215,81,1215,1215 0/1:7,3,0:10:99:219,0,177,241,201,442 0/0:36,0,0:36:63:0,63,945,63,945,945 0/0:36,0,0:36:60:0,60,900,60,900,900 0/0:33,0,0:33:57:0,57,855,57,855,855 0/0:70,0,0:70:90:0,90,1350,90,1350,1350 0/0:64,0,0:64:99:0,99,1485,99,1485,1485 0/0:57,0,0:57:90:0,90,1350,90,1350,1350 0/0:71,0,0:71:99:0,105,1575,105,1575,1575 0/0:66,0,0:66:99:0,99,1485,99,1485,1485 0/0:139,0,0:139:99:0,99,1485,99,1485,1485 0/0:54,0,0:54:99:0,99,1485,99,1485,1485 0/0:51,0,0:51:81:0,81,1215,81,1215,1215 0/0:39,0,0:39:37:0,37,1274,37,1274,1274 0/0:51,0,0:51:66:0,66,990,66,990,990 0/0:37,0,0:37:60:0,60,900,60,900,900 0/0:39,0,0:39:75:0,75,1125,75,1125,1125 0/0:15,0,0:15:27:0,27,405,27,405,405 0/0:104,0,0:104:99:0,114,1710,114,1710,1710 0/0:64,0,0:64:99:0,99,1485,99,1485,1485 0/0:51,0,0:51:72:0,72,1080,72,1080,1080 0/0:24,0,0:24:42:0,42,630,42,630,630 0/0:32,0,0:32:63:0,63,945,63,945,945 0/0:41,0,0:41:72:0,72,1080,72,1080,1080 0/0:77,0,0:77:99:0,108,1620,108,1620,1620 0/0:32,0,0:32:45:0,45,675,45,675,675 0/0:1,0,0:1:3:0,3,35,3,35,35 0/0:50,0,0:50:72:0,72,1080,72,1080,1080 0/0:56,0,0:56:60:0,60,900,60,900,900 0/0:26,0,0:26:30:0,30,450,30,450,450 0/0:33,0,0:33:57:0,57,855,57,855,855 0/0:42,0,0:42:36:0,36,540,36,540,540 0/0:67,0,0:67:99:0,99,1485,99,1485,1485 1 36316401 . C A 14566.08 . AC=68;AF=0.362;AN=188;BaseQRankSum=-1.546e+00;ClippingRankSum=-4.400e-02;DP=3786;FS=0.000;InbreedingCoeff=-0.6945;MLEAC=77;MLEAF=0.410;MQ=49.03;MQRankSum=-3.575e+00;QD=6.51;ReadPosRankSum=-9.660e-01;SOR=0.305 GT:AD:DP:GQ:PGT:PID:PL 0/1:23,12:35:99:0|1:36316401_C_A:196,0,831 0/0:64,0:64:0:.:.:0,0,131 0/1:19,29:48:99:.:.:678,0,373 0/1:27,14:41:99:0|1:36316401_C_A:228,0,1088 0/1:22,9:31:99:0|1:36316401_C_A:146,0,857 0/1:32,21:53:99:0|1:36316401_C_A:350,0,1300 0/1:15,9:24:99:0|1:36316401_C_A:127,0,540 0/1:18,7:25:32:.:.:32,0,426 0/1:13,13:26:99:0|1:36316401_C_A:252,0,589 ./.:150,0:150 0/0:36,0:36:0:.:.:0,0,706 0/1:14,8:22:99:0|1:36316401_C_A:142,0,524 ./.:1,0:1 0/1:18,10:28:99:0|1:36316401_C_A:128,0,758 0/1:18,8:26:98:0|1:36316401_C_A:98,0,877 0/0:40,2:42:99:.:.:0,105,1382 0/1:16,8:24:73:.:.:73,0,475 0/1:23,11:34:99:0|1:36316401_C_A:167,0,943 0/1:21,14:35:99:0|1:36316401_C_A:318,0,773 0/0:16,0:16:0:.:.:0,0,84 0/1:19,12:31:99:0|1:36316401_C_A:226,0,849 0/0:66,0:66:0:.:.:0,0,305 0/1:13,13:26:59:.:.:59,0,300 0/0:97,0:97:0:.:.:0,0,260 0/1:16,6:22:99:0|1:36316401_C_A:100,0,738 0/1:42,29:71:99:0|1:36316401_C_A:510,0,1416 0/1:18,5:23:30:.:.:30,0,534 0/1:19,7:26:84:0|1:36316401_C_A:84,0,737 0/1:7,10:17:98:.:.:98,0,169 0/1:17,6:23:50:.:.:50,0,418 0/1:13,6:19:21:.:.:21,0,345 0/1:16,7:23:83:0|1:36316401_C_A:83,0,617 0/1:16,7:23:99:0|1:36316401_C_A:124,0,609 0/1:13,8:21:99:0|1:36316401_C_A:200,0,504 0/1:24,10:34:55:.:.:55,0,600 0/1:31,18:49:99:0|1:36316401_C_A:206,0,1289 0/1:18,7:25:47:.:.:47,0,449 0/1:19,10:29:99:0|1:36316401_C_A:196,0,862 0/1:12,7:19:99:0|1:36316401_C_A:131,0,384 0/1:15,6:21:48:0|1:36316401_C_A:48,0,661 0/1:8,13:21:99:0|1:36316401_C_A:145,0,414 1/1:0,16:16:47:.:.:494,47,0 0/0:30,0:30:0:.:.:0,0,387 ./.:27,0:27 ./.:28,0:28 0/1:28,15:43:99:0|1:36316401_C_A:143,0,1064 0/1:9,15:24:99:0|1:36316401_C_A:406,0,397 0/1:44,43:87:99:0|1:36316401_C_A:720,0,1586 0/1:16,12:28:99:0|1:36316401_C_A:292,0,831 0/1:12,9:21:99:0|1:36316401_C_A:150,0,473 0/0:21,6:27:8:.:.:0,8,594 0/1:14,10:24:99:0|1:36316401_C_A:143,0,521 0/0:38,0:38:0:.:.:0,0,114 0/0:55,0:55:0:.:.:0,0,218 0/1:10,41:51:99:0|1:36316401_C_A:848,0,182 ./.:0,0:0 0/1:37,12:49:99:.:.:221,0,919 0/1:31,30:61:99:0|1:36316401_C_A:646,0,1065 0/0:16,0:16:0:.:.:0,0,139 0/1:20,7:27:84:0|1:36316401_C_A:84,0,695 0/1:16,12:28:99:.:.:299,0,381 0/1:26,9:35:99:0|1:36316401_C_A:173,0,1001 0/1:18,8:26:90:0|1:36316401_C_A:90,0,610 0/0:19,0:19:0:.:.:0,0,93 0/0:36,0:36:0:.:.:0,0,366 0/1:19,9:28:99:0|1:36316401_C_A:168,0,804 0/1:18,7:25:72:0|1:36316401_C_A:72,0,658 0/0:39,0:39:0:.:.:0,0,387 0/0:46,0:46:0:.:.:0,0,971 0/0:24,6:30:24:.:.:0,24,631 0/0:36,0:36:0:.:.:0,0,346 ./.:31,0:31 0/1:26,13:39:99:0|1:36316401_C_A:196,0,829 0/1:22,10:32:31:.:.:31,0,540 0/1:21,7:28:99:.:.:128,0,541 0/0:70,0:70:0:.:.:0,0,432 0/0:64,0:64:0:.:.:0,0,597 0/1:79,53:132:99:0|1:36316401_C_A:917,0,3016 0/0:64,0:64:0:.:.:0,0,862 0/1:17,13:30:99:0|1:36316401_C_A:291,0,682 0/1:15,5:20:99:0|1:36316401_C_A:136,0,577 0/1:10,17:27:99:.:.:276,0,240 0/0:38,0:38:0:.:.:0,0,503 0/0:34,0:34:0:.:.:0,0,280 0/0:15,0:15:0:.:.:0,0,74 0/0:142,0:142:0:.:.:0,0,1641 0/1:34,14:48:99:0|1:36316401_C_A:162,0,1430 0/1:18,11:29:99:0|1:36316401_C_A:214,0,744 0/0:24,0:24:0:.:.:0,0,361 0/1:16,6:22:99:0|1:36316401_C_A:118,0,566 0/1:28,10:38:99:0|1:36316401_C_A:138,0,1117 0/1:50,22:72:99:0|1:36316401_C_A:299,0,1995 0/1:16,8:24:49:.:.:49,0,414 0/0:3,0:3:6:.:.:0,6,90 0/1:19,10:29:99:0|1:36316401_C_A:214,0,648 0/1:15,26:41:99:0|1:36316401_C_A:647,0,638 0/0:26,0:26:0:.:.:0,0,72 0/1:20,7:27:30:.:.:30,0,544 0/1:14,0:14:99:.:.:286,0,756 0/1:35,18:53:99:0|1:36316401_C_A:325,0,1294 1 36316407 rs12031407 C A 9280.54 . AC=52;AF=0.265;AN=196;BaseQRankSum=-2.062e+00;ClippingRankSum=-1.400e-02;DB;DP=4018;FS=0.000;InbreedingCoeff=-0.5968;MLEAC=65;MLEAF=0.332;MQ=51.97;MQRankSum=-3.503e+00;QD=4.84;ReadPosRankSum=-1.878e+00;SOR=1.064 GT:AD:DP:GQ:PGT:PID:PL 0/1:26,9:35:99:0|1:36316401_C_A:147,0,929 0/0:60,0:60:0:.:.:0,0,701 0/1:34,15:49:81:.:.:81,0,1022 0/1:32,7:39:99:0|1:36316401_C_A:185,0,1223 0/1:28,7:35:99:0|1:36316401_C_A:104,0,1019 0/1:41,18:59:99:0|1:36316401_C_A:283,0,1419 0/1:20,3:23:40:0|1:36316401_C_A:40,0,700 0/0:33,0:33:0:.:.:0,0,678 0/1:21,7:28:99:0|1:36316401_C_A:224,0,714 ./.:86,0:86 0/0:36,0:36:9:.:.:0,9,923 0/1:15,6:21:98:0|1:36316401_C_A:98,0,530 0/0:1,0:1:3:.:.:0,3,35 0/1:23,10:33:99:0|1:36316401_C_A:119,0,854 0/1:24,5:29:23:0|1:36316401_C_A:23,0,981 0/0:56,0:56:6:.:.:0,6,1402 0/0:35,0:35:0:.:.:0,0,939 0/1:26,7:33:99:0|1:36316401_C_A:118,0,978 0/1:30,12:42:99:0|1:36316401_C_A:250,0,1021 0/0:20,0:20:0:.:.:0,0,332 0/1:29,10:39:99:0|1:36316401_C_A:182,0,1046 0/0:69,0:69:0:.:.:0,0,1488 0/0:34,0:34:0:.:.:0,0,581 0/0:99,0:99:0:.:.:0,0,1633 0/1:26,5:31:82:0|1:36316401_C_A:82,0,938 0/1:48,18:66:99:0|1:36316401_C_A:345,0,1627 0/0:37,0:37:0:.:.:0,0,723 0/1:21,4:25:74:0|1:36316401_C_A:74,0,772 0/0:20,0:20:0:.:.:0,0,411 0/0:34,0:34:0:.:.:0,0,506 0/0:23,0:23:0:.:.:0,0,468 0/1:22,4:26:29:0|1:36316401_C_A:29,0,782 0/1:21,7:28:99:0|1:36316401_C_A:109,0,766 0/1:14,7:21:99:0|1:36316401_C_A:177,0,507 0/0:43,0:43:0:.:.:0,0,763 0/1:45,15:60:99:0|1:36316401_C_A:182,0,1563 0/0:35,0:35:2:.:.:0,2,864 0/1:29,7:36:99:0|1:36316401_C_A:154,0,1059 0/1:11,6:17:99:0|1:36316401_C_A:108,0,387 0/1:23,5:28:28:0|1:36316401_C_A:28,0,874 0/1:13,13:26:99:0|1:36316401_C_A:122,0,474 0/1:10,5:15:44:.:.:44,0,280 0/0:30,0:30:0:.:.:0,0,548 0/0:24,0:24:0:.:.:0,0,28 0/0:29,0:29:0:.:.:0,0,321 0/1:33,11:44:99:0|1:36316401_C_A:131,0,1188 0/1:17,11:28:99:0|1:36316401_C_A:316,0,603 0/1:52,25:77:99:0|1:36316401_C_A:482,0,1839 0/1:27,11:38:99:0|1:36316401_C_A:257,0,956 0/1:18,7:25:99:0|1:36316401_C_A:111,0,629 0/0:39,0:39:0:.:.:0,0,861 0/1:17,7:24:99:0|1:36316401_C_A:111,0,618 0/0:36,0:36:0:.:.:0,0,543 0/0:48,0:48:0:.:.:0,0,484 0/1:11,27:38:99:0|1:36316401_C_A:726,0,268 ./.:0,0:0 0/0:93,0:93:0:.:.:0,0,890 0/1:42,23:65:99:0|1:36316401_C_A:449,0,1376 0/0:18,0:18:12:.:.:0,12,523 0/1:25,5:30:41:0|1:36316401_C_A:41,0,821 0/1:31,0:31:99:.:.:202,0,1294 0/1:30,7:37:99:0|1:36316401_C_A:125,0,1102 0/1:21,4:25:13:0|1:36316401_C_A:13,0,684 0/0:17,0:17:0:.:.:0,0,224 0/0:38,0:38:0:.:.:0,0,667 0/1:26,5:31:99:0|1:36316401_C_A:101,0,943 0/1:19,4:23:33:0|1:36316401_C_A:33,0,709 0/0:36,0:36:0:.:.:0,0,737 0/0:43,0:43:0:.:.:0,0,1106 0/0:36,0:36:0:.:.:0,0,635 0/0:34,0:34:0:.:.:0,0,630 0/0:26,0:26:0:.:.:0,0,214 0/1:31,9:40:99:0|1:36316401_C_A:126,0,979 0/0:41,0:41:0:.:.:0,0,723 0/0:34,0:34:2:.:.:0,2,1399 0/0:70,0:70:0:.:.:0,0,1187 0/0:57,0:57:0:.:.:0,0,1124 0/1:97,39:136:99:0|1:36316401_C_A:641,0,3573 0/0:69,0:69:0:.:.:0,0,1223 0/1:22,9:31:99:0|1:36316401_C_A:233,0,782 0/1:18,4:22:99:0|1:36316401_C_A:106,0,613 0/0:42,0:42:0:.:.:0,0,293 0/0:46,0:46:0:.:.:0,0,894 0/0:36,0:36:0:.:.:0,0,712 0/0:12,0:12:0:.:.:0,0,119 0/0:135,0:135:0:.:.:0,0,2781 0/1:45,7:52:40:0|1:36316401_C_A:40,0,1692 0/1:29,8:37:99:0|1:36316401_C_A:159,0,937 0/0:30,0:30:0:.:.:0,0,746 0/1:19,5:24:90:0|1:36316401_C_A:90,0,625 0/1:34,7:41:55:0|1:36316401_C_A:55,0,1287 0/1:57,17:74:99:0|1:36316401_C_A:199,0,2072 0/0:27,0:27:0:.:.:0,0,427 0/0:3,0:3:3:.:.:0,3,45 0/1:22,9:31:99:0|1:36316401_C_A:214,0,648 0/1:24,25:49:99:0|1:36316401_C_A:603,0,825 0/0:24,0:24:0:.:.:0,0,333 0/0:34,0:34:0:.:.:0,0,769 0/1:14,0:14:99:.:.:286,0,756 0/1:39,12:51:99:0|1:36316401_C_A:246,0,1335 1 36316418 rs11403763 C CA 81959.78 . AC=184;AF=0.958;AN=192;BaseQRankSum=-4.750e-01;ClippingRankSum=-4.340e-01;DB;DP=3801;FS=0.000;InbreedingCoeff=-0.0458;MLEAC=185;MLEAF=0.964;MQ=57.53;MQRankSum=0.019;QD=26.11;ReadPosRankSum=-1.930e-01;SOR=0.953 GT:AD:DP:GQ:PL 1/1:1,27:28:58:721,58,0 1/1:0,33:33:99:921,99,0 1/1:1,50:51:99:1362,127,0 1/1:3,28:31:21:751,21,0 1/1:1,34:35:81:951,81,0 1/1:1,35:36:84:970,84,0 1/1:2,19:21:8:466,8,0 1/1:1,18:19:34:502,34,0 1/1:1,27:28:58:725,58,0 ./.:55,0:55 0/1:4,25:29:20:631,0,20 1/1:1,15:16:21:387,21,0 ./.:0,0:0 1/1:0,26:26:87:802,87,0 1/1:3,28:31:16:728,16,0 1/1:2,45:47:90:1219,90,0 1/1:0,31:31:99:923,99,0 1/1:1,28:29:68:837,68,0 1/1:2,33:35:51:867,51,0 1/1:0,17:17:51:476,51,0 1/1:0,40:40:99:1137,123,0 1/1:2,44:46:92:1226,92,0 1/1:1,21:22:46:616,46,0 1/1:2,82:84:99:2309,210,0 1/1:2,27:29:34:700,34,0 1/1:4,51:55:60:1362,60,0 1/1:1,25:26:54:695,54,0 1/1:1,17:18:28:449,28,0 1/1:0,13:13:42:386,42,0 1/1:1,30:31:66:813,66,0 1/1:1,19:20:33:500,33,0 1/1:1,31:32:73:868,73,0 1/1:0,28:28:84:779,84,0 1/1:1,18:19:29:472,29,0 1/1:0,35:35:99:999,108,0 1/1:2,49:51:99:1338,102,0 1/1:1,29:30:70:829,70,0 1/1:1,27:28:64:784,64,0 1/1:2,17:19:8:443,8,0 1/1:1,27:28:59:728,59,0 1/1:1,13:14:17:364,17,0 1/1:0,19:19:57:534,57,0 1/1:2,18:20:7:450,7,0 0/1:4,13:17:58:315,0,58 1/1:0,22:22:69:646,69,0 1/1:0,41:41:99:1259,135,0 1/1:2,29:31:40:758,40,0 1/1:2,63:65:99:1920,165,0 1/1:1,29:30:67:815,67,0 0/1:2,14:16:8:342,0,8 1/1:0,27:27:81:755,81,0 1/1:0,19:19:60:550,60,0 1/1:1,24:25:52:670,52,0 1/1:2,30:32:47:810,47,0 1/1:0,8:8:27:249,27,0 ./.:0,0:0 0/1:24,41:71:99:1256,0,160 1/1:4,51:55:69:1458,69,0 1/1:2,22:24:21:566,21,0 1/1:1,25:26:52:666,52,0 0/1:16,41:57:99:980,0,224 1/1:0,40:40:99:1146,123,0 1/1:1,22:23:48:637,48,0 1/1:0,13:13:39:364,39,0 1/1:1,20:21:39:558,39,0 1/1:2,31:33:46:801,46,0 1/1:0,21:21:63:586,63,0 1/1:0,24:24:75:696,75,0 1/1:1,33:34:73:868,73,0 1/1:1,22:23:42:588,42,0 1/1:2,23:25:26:616,26,0 1/1:0,20:20:60:554,60,0 1/1:0,32:32:99:942,102,0 1/1:0,36:36:99:1005,108,0 0/1:9,31:40:37:755,0,37 1/1:2,62:64:99:1779,151,0 1/1:2,53:55:99:1432,113,0 1/1:3,114:117:99:3212,287,0 1/1:4,47:51:50:1263,50,0 1/1:1,26:27:55:697,55,0 1/1:0,18:18:54:497,54,0 1/1:0,25:25:78:725,78,0 1/1:2,42:44:87:1174,87,0 1/1:1,23:24:48:637,48,0 ./.:9,0:9 1/1:2,109:111:99:3226,295,0 1/1:5,49:54:39:1273,39,0 0/1:4,20:24:33:504,0,33 1/1:1,22:23:42:589,42,0 1/1:0,15:15:45:413,45,0 1/1:0,32:32:96:888,96,0 1/1:3,55:58:96:1449,96,0 1/1:0,16:16:54:498,54,0 1/1:0,4:4:15:139,15,0 1/1:0,26:26:78:710,78,0 1/1:1,33:34:76:891,76,0 1/1:1,16:17:25:421,25,0 1/1:0,30:30:90:840,90,0 0/1:12,20:32:99:443,0,272 1/1:0,43:43:99:1218,133,0 1 36316571 rs4652895 A C 193651.38 . AC=161;AF=0.830;AN=194;BaseQRankSum=-2.539e+00;ClippingRankSum=-1.700e-02;DB;DP=7120;FS=0.000;InbreedingCoeff=0.0567;MLEAC=162;MLEAF=0.835;MQ=55.87;MQRankSum=0.211;QD=28.70;ReadPosRankSum=0.204;SOR=0.693 GT:AD:DP:GQ:PL 0/1:33,38:71:99:1085,0,1007 1/1:0,91:91:99:3218,273,0 0/1:56,60:116:99:1510,0,1621 1/1:0,83:83:99:2910,249,0 1/1:0,67:67:99:2401,201,0 0/1:63,51:114:99:1357,0,2031 1/1:0,45:45:99:1571,135,0 1/1:0,56:56:99:1857,168,0 1/1:0,62:62:99:2196,186,0 1/1:2,73:75:99:2394,157,0 1/1:0,58:58:99:2037,174,0 1/1:0,39:39:99:1397,117,0 ./.:1,0:1 1/1:0,63:63:99:2284,190,0 1/1:1,59:60:99:2030,151,0 0/1:39,23:62:99:610,0,1287 1/1:1,59:60:99:2111,170,0 1/1:5,68:73:29:2075,29,0 1/1:1,84:85:99:2864,215,0 1/1:0,24:24:70:719,70,0 1/1:0,98:98:99:3486,294,0 1/1:9,97:106:12:2936,12,0 1/1:0,61:61:99:2097,183,0 1/1:0,172:172:99:5976,516,0 1/1:0,32:32:96:1130,96,0 1/1:0,81:81:99:2691,244,0 0/1:29,31:60:99:890,0,920 1/1:0,46:46:99:1665,138,0 1/1:0,41:41:99:1384,122,0 0/1:18,22:40:99:668,0,561 0/1:23,19:42:99:534,0,751 1/1:0,66:66:99:2359,198,0 1/1:0,69:69:99:2351,207,0 1/1:0,41:41:99:1432,123,0 1/1:1,88:89:99:3102,226,0 1/1:0,137:137:99:4488,408,0 1/1:0,68:68:99:2401,203,0 1/1:0,59:59:99:2130,178,0 0/1:17,32:49:99:996,0,492 1/1:0,59:59:99:2085,177,0 1/1:0,36:36:99:1252,108,0 0/0:38,0:38:90:0,90,1350 1/1:0,45:45:99:1557,135,0 0/1:21,27:48:99:832,0,612 0/1:22,25:47:99:769,0,695 1/1:1,93:94:99:3165,271,0 1/1:0,74:74:99:2444,222,0 1/1:0,137:137:99:4530,408,0 0/1:29,26:55:99:769,0,892 0/1:23,18:41:99:505,0,749 1/1:0,44:44:99:1474,131,0 1/1:0,68:68:99:2420,205,0 1/1:0,59:59:99:2054,177,0 0/0:39,0:39:99:0,102,1530 1/1:0,43:43:99:1558,129,0 ./.:0,0:0 0/1:69,56:125:99:1535,0,2164 1/1:2,161:163:99:5223,410,0 1/1:0,40:40:99:1407,119,0 1/1:0,50:50:99:1819,150,0 0/0:111,0:111:0:0,0,3304 1/1:0,78:78:99:2775,234,0 0/1:39,41:80:99:1136,0,1225 1/1:0,34:34:99:1138,101,0 1/1:0,35:35:99:1178,105,0 1/1:0,60:60:99:2182,181,0 1/1:0,53:53:99:1923,159,0 1/1:1,51:52:99:1736,118,0 1/1:0,46:46:99:1422,136,0 1/1:1,51:52:99:1767,146,0 0/1:38,33:71:99:971,0,1246 1/1:1,33:34:92:1108,92,0 1/1:0,82:82:99:2889,246,0 1/1:0,114:114:99:3854,341,0 0/1:55,57:112:99:1608,0,1657 0/1:42,47:89:99:1300,0,1208 1/1:0,92:92:99:3349,276,0 1/1:3,259:262:99:8486,658,0 1/1:1,91:92:99:3070,235,0 1/1:0,61:61:99:2185,183,0 1/1:0,43:43:99:1556,129,0 0/1:36,36:72:99:1007,0,1129 0/1:36,42:78:99:1299,0,1088 0/1:33,20:53:99:520,0,1101 1/1:0,21:21:63:748,63,0 1/1:7,230:237:99:7333,447,0 1/1:0,109:109:99:3785,327,0 0/1:32,46:78:99:1290,0,934 0/1:22,17:39:99:471,0,684 1/1:0,32:32:95:1095,95,0 0/1:37,42:79:99:1253,0,1136 1/1:0,131:131:99:4414,393,0 0/0:40,0:40:99:0,99,1478 ./.:3,0:3 1/1:0,68:68:99:2387,204,0 1/1:1,86:87:99:2871,251,0 1/1:1,41:42:86:1442,86,0 1/1:0,42:42:99:1479,126,0 0/1:41,50:91:99:1477,0,1216 0/1:29,29:58:99:717,0,733 1 36316678 rs3806291 G C 7494.87 . AC=8;AF=0.040;AN=200;BaseQRankSum=1.14;ClippingRankSum=0.196;DB;DP=4167;FS=0.524;InbreedingCoeff=0.1895;MLEAC=8;MLEAF=0.040;MQ=56.95;MQRankSum=0.418;QD=17.35;ReadPosRankSum=0.432;SOR=0.771 GT:AD:DP:GQ:PL 0/0:44,0:44:99:0,102,1530 0/0:50,0:50:99:0,99,1485 0/1:47,32:79:99:958,0,1436 0/0:51,0:51:99:0,105,1575 0/0:43,0:43:99:0,99,1485 0/0:47,0:47:99:0,105,1575 0/0:42,0:42:99:0,102,1530 0/0:43,0:43:99:0,99,1485 0/0:52,0:52:99:0,105,1575 0/0:61,0:61:99:0,120,1800 0/0:37,0:37:81:0,81,1215 0/0:34,0:34:72:0,72,1080 0/0:1,0:1:3:0,3,38 0/0:41,0:41:99:0,99,1485 0/0:38,0:38:99:0,100,1366 0/0:48,0:48:99:0,102,1530 0/0:39,0:39:90:0,90,1350 0/0:50,0:50:36:0,36,1619 0/0:50,0:50:99:0,102,1530 0/0:13,0:13:27:0,27,405 0/0:45,0:45:99:0,102,1530 0/0:81,0:81:35:0,35,2676 0/0:42,0:42:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:34,0:34:75:0,75,1125 0/0:34,0:34:60:0,60,900 0/0:36,0:36:81:0,81,1215 0/0:48,0:48:99:0,102,1530 0/0:34,0:34:72:0,72,1080 0/0:36,0:36:87:0,87,1305 0/0:22,0:22:39:0,39,585 0/0:43,0:43:84:0,84,1260 0/0:47,0:47:96:0,96,1440 0/0:27,0:27:66:0,66,990 0/0:43,0:43:99:0,102,1530 0/0:42,0:42:99:0,105,1575 0/0:44,0:44:99:0,102,1530 0/0:43,0:43:99:0,99,1485 0/0:35,0:35:81:0,81,1215 0/0:32,0:32:81:0,81,1215 0/0:32,0:32:72:0,72,1080 1/1:0,23:23:69:916,69,0 0/0:40,0:40:81:0,81,1215 0/1:19,10:29:99:295,0,652 0/0:35,0:35:81:0,81,1215 0/0:42,0:42:99:0,102,1530 0/0:45,0:45:99:0,102,1530 0/0:55,0:55:99:0,99,1485 0/0:52,0:52:99:0,105,1575 0/0:34,0:34:72:0,72,1080 0/0:48,0:48:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:16,0:16:45:0,45,675 0/0:2,0:2:6:0,6,58 0/1:47,34:81:99:1025,0,1486 0/0:45,0:45:99:0,99,1485 0/0:31,0:31:69:0,69,1035 0/0:46,0:46:99:0,99,1485 0/1:9,74:83:57:2533,0,57 0/0:48,0:48:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:38,0:38:78:0,78,1170 0/0:33,0:33:72:0,72,1080 0/0:41,0:41:93:0,93,1395 0/0:45,0:45:99:0,102,1530 0/0:34,0:34:72:0,72,1080 0/0:39,0:39:90:0,90,1350 0/0:26,0:26:60:0,60,900 0/0:42,0:42:99:0,102,1530 0/0:38,0:38:81:0,81,1215 0/0:48,0:48:99:0,102,1530 0/0:48,0:48:99:0,99,1485 0/1:50,40:90:99:1227,0,1505 0/0:44,0:44:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:48,0:48:99:0,105,1575 0/0:32,0:32:60:0,60,900 0/0:27,0:27:60:0,60,900 0/1:26,21:47:99:682,0,843 0/0:50,0:50:99:0,99,1485 0/0:48,0:48:99:0,102,1530 0/0:24,0:24:60:0,60,900 0/0:51,0:51:99:0,102,1530 0/0:44,0:44:99:0,102,1530 0/0:47,0:47:99:0,102,1530 0/0:28,0:28:60:0,60,900 0/0:28,0:28:66:0,66,990 0/0:45,0:45:99:0,99,1485 0/0:49,0:49:99:0,102,1530 0/0:44,0:44:93:0,93,1395 0/0:1,0:1:3:0,3,38 0/0:47,0:47:99:0,102,1530 0/0:48,0:48:99:0,99,1485 0/0:44,0:44:90:0,90,1350 0/0:31,0:31:72:0,72,1080 0/0:49,0:49:99:0,99,1485 0/0:46,0:46:99:0,99,1485 1 36319029 . G T 500.81 . AC=1;AF=5.000e-03;AN=200;BaseQRankSum=-2.156e+00;ClippingRankSum=-5.200e-02;DP=2562;FS=0.000;InbreedingCoeff=-0.0088;MLEAC=1;MLEAF=5.000e-03;MQ=58.07;MQRankSum=-3.970e-01;QD=14.73;ReadPosRankSum=0.224;SOR=0.811 GT:AD:DP:GQ:PL 0/0:28,0:28:72:0,72,1080 0/0:38,0:38:99:0,99,1485 0/0:39,0:39:99:0,102,1500 0/0:37,0:37:90:0,90,1350 0/0:24,0:24:72:0,72,947 0/0:40,0:40:99:0,99,1485 0/0:20,0:20:60:0,60,742 0/0:21,0:21:54:0,54,810 0/0:34,0:34:90:0,90,1350 0/0:39,0:39:99:0,105,1474 0/0:28,0:28:72:0,72,1080 0/0:18,0:18:48:0,48,720 0/0:2,0:2:6:0,6,49 0/0:22,0:22:63:0,63,945 0/0:20,0:20:48:0,48,720 0/0:17,0:17:45:0,45,675 0/0:28,0:28:81:0,81,1215 0/0:33,0:33:74:0,74,1141 0/0:30,0:30:75:0,75,1125 0/0:13,0:13:33:0,33,495 0/0:20,0:20:48:0,48,720 0/0:42,0:42:99:0,99,1485 0/0:21,0:21:48:0,48,720 0/0:40,0:40:99:0,102,1470 0/0:10,0:10:30:0,30,350 0/0:36,0:36:99:0,99,1485 0/0:22,0:22:51:0,51,765 0/0:27,0:27:81:0,81,983 0/0:19,0:19:57:0,57,695 0/0:15,0:15:39:0,39,585 0/0:23,0:23:57:0,57,855 0/0:30,0:30:72:0,72,1080 0/0:21,0:21:57:0,57,855 0/0:7,0:7:12:0,12,180 0/0:38,0:38:90:0,90,1350 0/0:40,0:40:99:0,99,1485 0/0:28,0:28:60:0,60,900 0/0:25,0:25:60:0,60,900 0/0:20,0:20:42:0,42,630 0/0:21,0:21:60:0,60,900 0/0:19,0:19:48:0,48,720 0/0:15,0:15:39:0,39,585 0/0:24,0:24:60:0,60,900 0/0:20,0:20:51:0,51,765 0/0:14,0:14:36:0,36,540 0/0:42,0:42:99:0,99,1485 0/0:28,0:28:60:0,60,900 0/0:35,0:35:99:0,99,1325 0/0:28,0:28:75:0,75,1125 0/0:11,0:11:33:0,33,408 0/0:33,0:33:81:0,81,1215 0/0:17,0:17:45:0,45,675 0/0:21,0:21:60:0,60,900 0/0:21,0:21:51:0,51,765 0/0:11,0:11:30:0,30,450 0/0:2,0:2:6:0,6,72 0/0:42,0:42:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:11,0:11:20:0,20,361 0/0:28,0:28:72:0,72,1080 0/0:29,0:29:72:0,72,1080 0/0:24,0:24:54:0,54,810 0/0:30,0:30:81:0,81,1215 0/0:29,0:29:72:0,72,1080 0/0:25,0:25:72:0,72,903 0/0:22,0:22:60:0,60,900 0/0:22,0:22:53:0,53,787 0/0:20,0:20:51:0,51,765 0/0:24,0:24:72:0,72,899 0/0:17,0:17:51:0,51,645 0/0:26,0:26:60:0,60,900 0/0:20,0:20:57:0,57,855 0/0:32,0:32:72:0,72,1080 0/0:36,0:36:99:0,99,1485 0/0:35,0:35:90:0,90,1350 0/0:38,0:38:99:0,101,1420 0/0:35,0:35:81:0,81,1215 0/0:39,0:39:99:0,99,1389 0/0:40,0:40:99:0,99,1485 0/0:29,0:29:81:0,81,1097 0/0:23,0:23:57:0,57,855 0/0:29,0:29:57:0,57,855 0/0:27,0:27:72:0,72,1080 0/0:23,0:23:54:0,54,810 0/0:8,0:8:24:0,24,293 0/0:39,0:39:99:0,99,1485 0/0:37,0:37:99:0,102,1530 0/0:26,0:26:60:0,60,900 0/0:13,0:13:36:0,36,540 0/0:9,0:9:24:0,24,360 0/0:34,0:34:90:0,90,1350 0/0:40,0:40:99:0,105,1575 0/0:22,0:22:54:0,54,810 0/0:1,0:1:3:0,3,33 0/0:22,0:22:57:0,57,855 0/0:41,0:41:99:0,99,1485 0/0:26,0:26:72:0,72,1080 0/0:18,0:18:42:0,42,630 0/1:16,18:34:99:543,0,498 0/0:21,0:21:28:0,28,618 1 36319055 . T C 487.80 . AC=1;AF=5.000e-03;AN=200;BaseQRankSum=-3.290e-01;ClippingRankSum=0.564;DP=2997;FS=0.000;InbreedingCoeff=-0.0080;MLEAC=1;MLEAF=5.000e-03;MQ=58.38;MQRankSum=0.612;QD=17.42;ReadPosRankSum=0.282;SOR=1.179 GT:AD:DP:GQ:PL 0/0:31,0:31:72:0,72,1080 0/0:41,0:41:81:0,81,1215 0/0:39,0:39:99:0,102,1500 0/0:35,0:35:72:0,72,1080 0/0:39,0:39:99:0,102,1389 0/0:45,0:45:99:0,99,1485 0/0:25,0:25:57:0,57,855 0/0:20,0:20:39:0,39,585 0/0:31,0:31:72:0,72,1080 0/0:47,0:47:78:0,78,1170 0/0:35,0:35:81:0,81,1215 0/0:18,0:18:42:0,42,630 0/0:2,0:2:6:0,6,73 0/0:29,0:29:72:0,72,1080 0/0:20,0:20:45:0,45,675 0/0:31,0:31:81:0,81,1215 0/0:33,0:33:81:0,81,1215 0/0:39,0:39:93:0,93,1395 0/0:37,0:37:93:0,93,1395 0/0:17,0:17:45:0,45,675 0/0:41,0:41:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:21,0:21:48:0,48,720 0/0:40,0:40:99:0,102,1470 0/0:19,0:19:44:0,44,624 0/0:36,0:36:99:0,99,1485 0/0:23,0:23:54:0,54,810 0/0:35,0:35:63:0,63,945 0/0:23,0:23:51:0,51,765 0/0:22,0:22:51:0,51,765 0/0:16,0:16:39:0,39,585 0/0:33,0:33:81:0,81,1215 0/0:34,0:34:84:0,84,1260 0/0:17,0:17:42:0,42,630 0/0:42,0:42:99:0,105,1575 0/0:40,0:40:99:0,99,1485 0/0:19,0:19:48:0,48,720 0/0:20,0:20:51:0,51,765 0/0:26,0:26:72:0,72,1080 0/0:30,0:30:78:0,78,1170 0/0:14,0:14:30:0,30,450 0/0:12,0:12:30:0,30,450 0/0:29,0:29:60:0,60,900 0/0:19,0:19:33:0,33,495 0/0:30,0:30:81:0,81,1215 0/0:50,0:50:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:35,0:35:99:0,99,1325 0/0:32,0:32:72:0,72,1080 0/0:23,0:23:60:0,60,900 0/0:26,0:26:60:0,60,900 0/0:23,0:23:60:0,60,900 0/0:37,0:37:99:0,102,1530 0/0:28,0:28:60:0,60,900 0/0:12,0:12:24:0,24,360 0/0:3,0:3:9:0,9,94 0/0:44,0:44:99:0,105,1523 0/0:39,0:39:99:0,99,1485 0/0:19,0:19:48:0,48,720 0/0:35,0:35:81:0,81,1215 0/0:41,0:41:99:0,99,1485 0/0:35,0:35:90:0,90,1350 0/0:37,0:37:93:0,93,1395 0/0:23,0:23:51:0,51,765 0/1:11,17:28:99:530,0,318 0/0:32,0:32:81:0,81,1215 0/0:34,0:34:81:0,81,1215 0/0:32,0:32:72:0,72,1080 0/0:26,0:26:57:0,57,855 0/0:20,0:20:42:0,42,630 0/0:36,0:36:81:0,81,1215 0/0:28,0:28:63:0,63,945 0/0:34,0:34:81:0,81,1215 0/0:36,0:36:99:0,99,1485 0/0:45,0:45:99:0,114,1710 0/0:38,0:38:99:0,101,1420 0/0:42,0:42:99:0,102,1530 0/0:39,0:39:99:0,99,1389 0/0:40,0:40:99:0,99,1485 0/0:31,0:31:75:0,75,1125 0/0:28,0:28:72:0,72,1080 0/0:33,0:33:72:0,72,1080 0/0:37,0:37:99:0,99,1453 0/0:30,0:30:72:0,72,1080 0/0:11,0:11:30:0,30,450 0/0:39,0:39:99:0,99,1485 0/0:37,0:37:99:0,102,1530 0/0:42,0:42:99:0,99,1485 0/0:14,0:14:36:0,36,540 0/0:9,0:9:27:0,27,330 0/0:38,0:38:90:0,90,1350 0/0:40,0:40:99:0,105,1575 0/0:31,0:31:60:0,60,900 0/0:1,0:1:3:0,3,33 0/0:29,0:29:63:0,63,945 0/0:45,0:45:99:0,99,1485 0/0:31,0:31:72:0,72,1080 0/0:23,0:23:57:0,57,855 0/0:33,0:33:66:0,66,990 0/0:25,0:25:39:0,39,663 1 36320284 . T G 82.81 . AC=1;AF=5.000e-03;AN=200;BaseQRankSum=0.731;ClippingRankSum=-7.310e-01;DP=4049;FS=0.000;InbreedingCoeff=0.0003;MLEAC=1;MLEAF=5.000e-03;MQ=60.00;MQRankSum=0.731;QD=16.56;ReadPosRankSum=0.731;SOR=1.981 GT:AD:DP:GQ:PL 0/0:39,0:39:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:39,0:39:99:0,102,1500 0/0:42,0:42:99:0,99,1485 0/0:51,0:51:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:42,0:42:99:0,105,1575 0/0:43,0:43:99:0,99,1485 0/0:41,0:41:99:0,102,1530 0/0:45,0:45:99:0,105,1575 0/0:44,0:44:99:0,99,1485 0/0:2,0:2:6:0,6,76 0/0:41,0:41:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:46,0:46:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:26,0:26:57:0,57,855 0/0:43,0:43:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:40,0:40:99:0,102,1470 0/0:43,0:43:99:0,99,1485 0/0:2,0:2:3:0,3,45 0/0:43,0:43:99:0,99,1485 0/0:42,0:42:99:0,105,1575 0/0:42,0:42:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:43,0:43:99:0,102,1530 0/0:40,0:40:99:0,99,1485 0/0:47,0:47:99:0,104,1575 0/0:45,0:45:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:37,0:37:99:0,99,1485 0/0:44,0:44:99:0,102,1530 0/0:40,0:40:99:0,99,1485 0/0:48,0:48:99:0,102,1530 0/0:43,0:43:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:41,0:41:99:0,102,1530 0/0:40,0:40:99:0,99,1485 0/0:36,0:36:99:0,99,1485 0/0:50,0:50:99:0,99,1485 0/0:46,0:46:99:0,117,1755 0/0:35,0:35:99:0,99,1325 0/0:52,0:52:99:0,102,1530 0/0:47,0:47:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:48,0:48:99:0,100,1620 0/1:1,4:5:21:125,0,21 0/0:44,0:44:99:0,105,1523 0/0:39,0:39:99:0,99,1485 0/0:42,0:42:99:0,102,1530 0/0:39,0:39:99:0,99,1485 0/0:50,0:50:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:43,0:43:99:0,102,1530 0/0:50,0:50:99:0,105,1575 0/0:42,0:42:99:0,99,1409 0/0:41,0:41:99:0,99,1449 0/0:50,0:50:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:43,0:43:99:0,102,1530 0/0:39,0:39:99:0,99,1485 0/0:46,0:46:99:0,102,1530 0/0:41,0:41:99:0,102,1530 0/0:36,0:36:99:0,99,1485 0/0:45,0:45:99:0,114,1710 0/0:38,0:38:99:0,101,1420 0/0:45,0:45:99:0,105,1575 0/0:39,0:39:99:0,99,1389 0/0:40,0:40:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:47,0:47:99:0,99,1485 0/0:45,0:45:99:0,105,1575 0/0:46,0:46:99:0,102,1530 0/0:44,0:44:99:0,102,1530 0/0:18,0:18:30:0,30,450 0/0:39,0:39:99:0,99,1485 0/0:37,0:37:99:0,102,1530 0/0:45,0:45:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:41,0:41:90:0,90,1350 0/0:42,0:42:99:0,99,1485 0/0:40,0:40:99:0,105,1575 0/0:42,0:42:99:0,99,1485 0/0:2,0:2:6:0,6,71 0/0:42,0:42:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:43,0:43:99:0,102,1530 0/0:42,0:42:99:0,105,1575 0/0:39,0:39:99:0,102,1413 1 36320804 rs41267261 G A 1653.73 . AC=1;AF=5.000e-03;AN=200;BaseQRankSum=-5.107e+00;ClippingRankSum=-3.140e-01;DB;DP=4059;FS=6.821;InbreedingCoeff=-0.0056;MLEAC=1;MLEAF=5.000e-03;MQ=57.56;MQRankSum=-5.510e-01;QD=13.23;ReadPosRankSum=-7.240e-01;SOR=1.238 GT:AD:DP:GQ:PL 0/0:45,0:45:99:0,102,1530 0/0:39,0:39:99:0,99,1485 0/0:39,0:39:99:0,102,1500 0/0:42,0:42:99:0,99,1485 0/0:51,0:51:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:41,0:41:93:0,93,1395 0/0:39,0:39:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:41,0:41:99:0,102,1530 0/0:43,0:43:99:0,99,1485 0/0:32,0:32:72:0,72,1080 0/0:10,0:10:30:0,30,385 0/0:43,0:43:99:0,99,1485 0/0:47,0:47:99:0,102,1530 0/0:40,0:40:99:0,99,1470 0/0:40,0:40:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:25,0:25:54:0,54,810 0/0:43,0:43:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:40,0:40:99:0,102,1470 0/0:44,0:44:99:0,105,1575 0/0:37,0:37:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:38,0:38:84:0,84,1260 0/0:43,0:43:99:0,102,1530 0/0:32,0:32:81:0,81,1215 0/0:41,0:41:99:0,102,1530 0/0:37,0:37:99:0,99,1480 0/0:37,0:37:90:0,90,1350 0/0:45,0:45:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:38,0:38:99:0,102,1530 0/0:41,0:41:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:40,0:40:99:0,105,1575 0/0:21,0:21:45:0,45,675 0/0:43,0:43:99:0,99,1485 0/0:34,0:34:72:0,72,1080 0/0:40,0:40:93:0,93,1395 0/0:50,0:50:99:0,99,1485 0/0:46,0:46:99:0,117,1755 0/1:65,60:125:99:1696,0,2050 0/0:44,0:44:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:37,0:37:99:0,99,1441 0/0:38,0:38:99:0,102,1530 0/0:38,0:38:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:4,0:4:12:0,12,137 0/0:44,0:44:99:0,105,1523 0/0:39,0:39:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:43,0:43:99:0,102,1530 0/0:50,0:50:99:0,99,1485 0/0:46,0:46:99:0,105,1575 0/0:51,0:51:99:0,99,1485 0/0:35,0:35:99:0,99,1329 0/0:41,0:41:96:0,96,1440 0/0:45,0:45:99:0,99,1485 0/0:41,0:41:99:0,102,1530 0/0:42,0:42:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:42,0:42:99:0,102,1530 0/0:40,0:40:90:0,90,1350 0/0:41,0:41:99:0,102,1530 0/0:36,0:36:99:0,99,1485 0/0:45,0:45:99:0,114,1710 0/0:38,0:38:99:0,101,1420 0/0:45,0:45:99:0,105,1575 0/0:39,0:39:99:0,99,1389 0/0:40,0:40:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:45,0:45:99:0,105,1575 0/0:46,0:46:99:0,102,1530 0/0:44,0:44:99:0,102,1530 0/0:17,0:17:42:0,42,630 0/0:39,0:39:99:0,99,1485 0/0:37,0:37:99:0,102,1530 0/0:45,0:45:99:0,99,1485 0/0:38,0:38:99:0,102,1530 0/0:26,0:26:66:0,66,990 0/0:43,0:43:99:0,99,1485 0/0:40,0:40:99:0,105,1575 0/0:44,0:44:99:0,99,1485 0/0:4,0:4:12:0,12,135 0/0:42,0:42:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:44,0:44:99:0,105,1575 0/0:40,0:40:99:0,102,1530 0/0:42,0:42:99:0,105,1575 0/0:49,0:49:99:0,102,1530 1 36320901 rs12059301 G T 8064.42 . AC=7;AF=0.035;AN=200;BaseQRankSum=-1.877e+00;ClippingRankSum=0.822;DB;DP=4315;FS=3.277;InbreedingCoeff=0.2391;MLEAC=7;MLEAF=0.035;MQ=58.58;MQRankSum=-5.640e-01;QD=17.27;ReadPosRankSum=-6.580e-01;SOR=0.947 GT:AD:DP:GQ:PL 0/0:45,0:45:99:0,102,1530 0/0:39,0:39:99:0,99,1485 0/1:62,53:115:99:1386,0,1859 0/0:42,0:42:99:0,99,1485 0/0:51,0:51:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:46,0:46:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:41,0:41:99:0,102,1530 0/0:41,0:41:99:0,102,1530 0/0:45,0:45:99:0,99,1485 0/0:34,0:34:79:0,79,1199 0/0:8,0:8:15:0,15,225 0/0:39,0:39:99:0,105,1575 0/0:46,0:46:99:0,102,1530 0/0:40,0:40:99:0,99,1470 0/0:40,0:40:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:29,0:29:69:0,69,1035 0/0:43,0:43:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:40,0:40:99:0,102,1470 0/0:37,0:37:93:0,93,1395 0/0:36,0:36:75:0,75,1125 0/0:38,0:38:90:0,90,1350 0/0:39,0:39:99:0,99,1485 0/0:42,0:42:99:0,102,1530 0/0:44,0:44:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:48,0:48:99:0,99,1485 0/0:46,0:46:99:0,99,1485 0/0:38,0:38:90:0,90,1350 0/0:45,0:45:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:38,0:38:87:0,87,1305 0/0:38,0:38:99:0,102,1530 0/0:43,0:43:99:0,102,1530 0/0:42,0:42:99:0,99,1485 0/0:30,0:30:73:0,73,983 1/1:0,23:23:69:840,69,0 0/0:38,0:38:99:0,102,1530 0/1:18,20:38:99:600,0,546 0/0:44,0:44:91:0,91,1440 0/0:50,0:50:99:0,99,1485 0/0:46,0:46:99:0,117,1755 0/0:108,0:108:99:0,120,1800 0/0:44,0:44:99:0,99,1485 0/0:32,0:32:72:0,72,1080 0/0:46,0:46:99:0,102,1530 0/0:41,0:41:99:0,99,1485 0/0:38,0:38:99:0,102,1530 0/0:38,0:38:99:0,99,1485 0/0:29,0:29:63:0,63,945 0/0:3,0:3:9:0,9,95 0/1:55,62:117:99:1842,0,1620 0/0:39,0:39:99:0,99,1485 0/0:42,0:42:90:0,90,1350 0/0:45,0:45:99:0,102,1530 0/1:13,78:91:99:2562,0,211 0/0:50,0:50:99:0,105,1575 0/0:45,0:45:99:0,102,1530 0/0:40,0:40:99:0,105,1575 0/0:44,0:44:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:39,0:39:99:0,102,1530 0/0:35,0:35:87:0,87,1305 0/0:43,0:43:99:0,99,1485 0/0:42,0:42:99:0,99,1530 0/0:41,0:41:99:0,102,1530 0/0:36,0:36:99:0,99,1485 0/1:47,36:83:99:965,0,1457 0/0:38,0:38:99:0,101,1420 0/0:45,0:45:99:0,105,1575 0/0:39,0:39:99:0,99,1389 0/0:40,0:40:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:44,0:44:96:0,96,1440 0/0:45,0:45:99:0,105,1575 0/0:46,0:46:99:0,102,1530 0/0:44,0:44:99:0,102,1530 0/0:22,0:22:51:0,51,765 0/0:39,0:39:99:0,99,1485 0/0:37,0:37:99:0,102,1530 0/0:45,0:45:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:40,0:40:99:0,105,1575 0/0:40,0:40:99:0,99,1485 0/0:1,0:1:3:0,3,35 0/0:42,0:42:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:38,0:38:84:0,84,1260 0/0:42,0:42:99:0,105,1575 0/0:62,0:62:99:0,120,1800 1 36321012 . A G 821.77 . AC=1;AF=5.051e-03;AN=198;BaseQRankSum=3.33;ClippingRankSum=-3.980e-01;DP=4296;FS=7.445;InbreedingCoeff=-0.0057;MLEAC=1;MLEAF=5.051e-03;MQ=57.15;MQRankSum=-8.520e-01;QD=9.13;ReadPosRankSum=-1.410e-01;SOR=1.267 GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,101,1532 0/0:39,0:39:99:0,99,1485 0/0:79,0:79:99:0,120,1800 0/0:42,0:42:99:0,99,1485 0/0:51,0:51:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:41,0:41:99:0,102,1530 0/0:41,0:41:99:0,102,1530 0/0:40,0:40:84:0,84,1260 0/0:43,0:43:99:0,105,1575 0/0:5,0:5:12:0,12,180 0/0:39,0:39:99:0,105,1575 0/0:50,0:50:99:0,117,1755 0/0:42,0:42:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:36,0:36:90:0,90,1350 0/0:43,0:43:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:46,0:46:99:0,102,1530 0/0:40,0:40:99:0,102,1470 0/0:41,0:41:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:34,0:34:90:0,90,1350 0/0:38,0:38:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:36,0:36:92:0,92,1245 0/0:48,0:48:99:0,99,1485 0/0:46,0:46:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:38,0:38:99:0,102,1530 0/0:41,0:41:99:0,102,1530 0/0:42,0:42:99:0,99,1485 0/0:32,0:32:81:0,81,1215 0/0:33,0:33:72:0,72,1080 0/0:43,0:43:84:0,84,1260 0/0:36,0:36:84:0,84,1260 0/0:41,0:41:99:0,99,1485 0/0:50,0:50:99:0,99,1485 0/0:46,0:46:99:0,117,1755 0/0:108,0:108:99:0,120,1800 0/0:44,0:44:99:0,99,1485 0/0:39,0:39:96:0,96,1440 0/0:46,0:46:99:0,102,1530 0/0:41,0:41:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:43,0:43:99:0,108,1561 0/0:6,0:6:12:0,12,180 0/0:68,0:68:99:0,102,1530 0/0:39,0:39:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:45,0:45:99:0,102,1530 0/0:57,0:57:99:0,120,1800 0/0:50,0:50:99:0,105,1575 0/0:45,0:45:99:0,102,1530 0/0:39,0:39:99:0,99,1404 0/0:44,0:44:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:39,0:39:99:0,102,1530 0/0:35,0:35:90:0,90,1350 0/0:43,0:43:99:0,99,1485 0/0:37,0:37:81:0,81,1215 0/0:41,0:41:99:0,102,1530 0/0:36,0:36:99:0,99,1485 0/0:80,0:80:99:0,120,1800 0/0:38,0:38:99:0,101,1420 0/0:45,0:45:99:0,105,1575 0/0:39,0:39:99:0,99,1389 0/0:40,0:40:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:45,0:45:99:0,105,1575 0/0:46,0:46:99:0,102,1530 0/0:44,0:44:99:0,102,1530 0/0:20,0:20:54:0,54,810 0/0:39,0:39:99:0,99,1485 0/0:37,0:37:99:0,102,1530 0/1:60,30:90:99:864,0,1895 0/0:47,0:47:96:0,96,1440 0/0:42,0:42:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:40,0:40:99:0,105,1575 0/0:45,0:45:99:0,99,1485 ./.:0,0:0 0/0:42,0:42:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:43,0:43:99:0,102,1530 0/0:42,0:42:99:0,105,1575 0/0:62,0:62:99:0,120,1800 1 36321067 rs77235743 C G 2569.91 . AC=3;AF=0.015;AN=198;BaseQRankSum=0.254;ClippingRankSum=-3.910e-01;DB;DP=4306;FS=0.593;InbreedingCoeff=-0.0189;MLEAC=3;MLEAF=0.015;MQ=59.01;MQRankSum=0.309;QD=16.58;ReadPosRankSum=0.117;SOR=0.636 GT:AD:DP:GQ:PL 0/0:46,0:46:99:0,101,1532 0/0:39,0:39:99:0,99,1485 0/0:79,0:79:99:0,120,1800 0/0:42,0:42:99:0,99,1485 0/0:51,0:51:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:41,0:41:99:0,102,1530 0/0:41,0:41:99:0,102,1530 0/0:39,0:39:99:0,99,1485 0/0:37,0:37:99:0,99,1485 0/0:6,0:6:7:0,7,173 0/0:39,0:39:99:0,105,1575 0/0:43,0:43:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:26,0:26:46:0,46,828 0/0:43,0:43:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:35,0:35:84:0,84,1260 0/0:40,0:40:99:0,102,1470 0/0:41,0:41:99:0,99,1485 0/0:44,0:44:99:0,99,1320 0/0:41,0:41:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:48,0:48:99:0,99,1485 0/0:46,0:46:99:0,99,1485 0/0:40,0:40:99:0,99,1471 0/0:45,0:45:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:46,0:46:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:41,0:41:99:0,102,1530 0/0:41,0:41:99:0,99,1485 0/0:40,0:40:96:0,96,1440 0/0:35,0:35:90:0,90,1350 0/0:46,0:46:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:50,0:50:99:0,99,1485 0/0:46,0:46:99:0,117,1755 0/0:108,0:108:99:0,120,1800 0/0:44,0:44:99:0,99,1485 0/1:16,29:45:99:913,0,480 0/0:46,0:46:99:0,102,1530 0/0:41,0:41:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:49,0:49:99:0,99,1485 ./.:1,0:1 0/0:68,0:68:99:0,102,1530 0/0:39,0:39:99:0,99,1485 0/0:42,0:42:96:0,96,1440 0/0:45,0:45:99:0,102,1530 0/0:57,0:57:99:0,120,1800 0/0:50,0:50:99:0,105,1575 0/0:45,0:45:99:0,102,1530 0/0:39,0:39:99:0,99,1404 0/1:31,32:63:99:899,0,865 0/1:21,26:47:99:832,0,601 0/0:45,0:45:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:39,0:39:99:0,102,1530 0/0:40,0:40:90:0,90,1350 0/0:43,0:43:99:0,99,1485 0/0:42,0:42:99:0,102,1530 0/0:41,0:41:99:0,102,1530 0/0:36,0:36:99:0,99,1485 0/0:80,0:80:99:0,120,1800 0/0:38,0:38:99:0,101,1420 0/0:45,0:45:99:0,105,1575 0/0:39,0:39:99:0,99,1389 0/0:40,0:40:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:45,0:45:99:0,105,1575 0/0:46,0:46:99:0,102,1530 0/0:44,0:44:99:0,102,1530 0/0:19,0:19:51:0,51,765 0/0:39,0:39:99:0,99,1485 0/0:37,0:37:99:0,102,1530 0/0:63,0:63:99:0,102,1530 0/0:40,0:40:99:0,99,1485 0/0:39,0:39:99:0,102,1530 0/0:43,0:43:99:0,99,1485 0/0:40,0:40:99:0,105,1575 0/0:43,0:43:99:0,99,1485 0/0:4,0:4:0:0,0,76 0/0:42,0:42:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:43,0:43:99:0,102,1530 0/0:42,0:42:99:0,105,1575 0/0:62,0:62:99:0,120,1800 1 36321253 . CTT CT,C 5255.33 . AC=38,4;AF=0.192,0.020;AN=198;BaseQRankSum=-1.398e+00;ClippingRankSum=0.270;DP=4524;FS=57.370;InbreedingCoeff=-0.2459;MLEAC=46,3;MLEAF=0.232,0.015;MQ=54.32;MQRankSum=0.573;QD=6.80;ReadPosRankSum=-2.490e-01;SOR=3.915 GT:AD:DP:GQ:PL 0/0:26,0,0:26:0:0,0,400,0,400,400 0/1:11,10,0:21:99:153,0,177,187,207,394 0/0:85,0,0:85:0:0,0,1870,0,1870,1870 0/0:55,0,0:55:0:0,0,904,0,904,904 0/0:43,0,0:43:0:0,0,1030,0,1030,1030 0/1:7,11,0:18:99:202,0,102,222,136,358 0/0:38,0,0:38:0:0,0,418,0,418,418 0/1:3,6,0:9:41:110,0,41,119,59,178 0/1:12,8,0:20:99:126,0,186,161,211,372 0/1:34,16,0:50:99:205,0,588,308,637,945 0/0:31,0,0:31:0:0,0,552,0,552,552 0/0:31,0,0:31:0:0,0,493,0,493,493 ./.:0,0,0:0 0/1:10,7,0:17:99:111,0,167,141,188,329 0/0:31,0,0:31:0:0,0,573,0,573,573 0/0:37,0,0:37:0:0,0,674,0,674,674 0/1:8,7,0:15:99:116,0,128,141,149,290 0/1:10,6,0:16:89:89,0,178,120,197,317 0/1:16,9,0:25:99:130,0,275,179,302,481 0/2:9,0,3:12:67:67,94,322,0,228,218 0/1:5,7,0:12:73:124,0,73,140,95,235 0/1:15,6,0:21:76:76,0,267,121,286,407 0/0:29,0,0:29:0:0,0,750,0,750,750 0/1:10,16,0:31:99:227,0,387,257,179,436 0/0:30,0,0:30:0:0,0,625,0,625,625 0/0:49,0,0:49:0:0,0,1144,0,1144,1144 0/0:31,0,0:31:0:0,0,679,0,679,679 0/0:33,0,0:33:0:0,0,423,0,423,423 0/1:8,6,0:14:97:97,0,130,121,148,269 0/1:5,5,0:10:79:80,0,79,97,95,191 0/1:3,8,0:11:33:150,0,33,160,57,217 0/0:40,0,0:40:30:0,30,1158,30,1158,1158 0/0:35,0,0:35:0:0,0,727,0,727,727 0/0:35,0,0:35:0:0,0,770,0,770,770 0/0:50,0,0:50:0:0,0,1043,0,1043,1043 0/1:24,8,0:32:91:91,0,408,163,433,596 0/0:43,0,0:43:2:0,2,1085,2,1085,1085 0/0:47,0,0:47:0:0,0,1117,0,1117,1117 0/1:3,7,0:10:34:129,0,34,138,55,194 0/0:37,0,0:37:0:0,0,903,0,903,903 0/0:36,0,0:36:0:0,0,489,0,489,489 0/2:6,0,4:10:99:107,125,260,0,135,123 0/0:35,0,0:35:0:0,0,612,0,612,612 0/0:29,0,0:29:0:0,0,440,0,440,440 0/0:39,0,0:39:0:0,0,660,0,660,660 0/1:8,7,0:15:99:116,0,130,140,151,292 0/0:63,0,0:63:0:0,0,1411,0,1411,1411 0/1:20,10,6:36:99:190,0,326,122,338,997 0/0:33,0,0:33:0:0,0,638,0,638,638 0/0:26,0,0:26:0:0,0,353,0,353,353 0/1:7,7,0:14:97:121,0,97,141,118,259 0/0:29,0,0:29:26:0,26,772,26,772,772 0/0:56,0,0:56:0:0,0,1095,0,1095,1095 0/0:29,0,0:29:0:0,0,597,0,597,597 0/0:53,0,0:53:0:0,0,1097,0,1097,1097 0/0:2,0,0:2:3:0,3,45,3,45,45 0/0:61,0,0:61:0:0,0,967,0,967,967 0/1:21,10,0:31:99:137,0,361,202,392,594 0/0:34,0,0:34:0:0,0,716,0,716,716 0/0:30,0,0:30:0:0,0,578,0,578,578 0/0:68,0,0:68:0:0,0,1175,0,1175,1175 0/0:43,0,0:43:78:0,78,1170,78,1170,1170 0/0:34,0,0:34:23:0,23,865,23,865,865 0/1:3,6,0:9:38:85,0,38,94,55,149 0/0:36,0,0:36:32:0,32,963,32,963,963 0/1:3,6,0:9:39:109,0,39,119,57,176 0/0:32,0,0:32:0:0,0,681,0,681,681 0/1:7,5,0:12:62:62,0,115,84,130,214 0/1:7,4,0:11:60:60,0,120,81,132,212 0/0:31,0,0:31:0:0,0,584,0,584,584 0/0:46,0,0:46:0:0,0,1138,0,1138,1138 0/0:31,0,0:31:0:0,0,594,0,594,594 0/0:53,0,0:53:0:0,0,1048,0,1048,1048 0/1:10,7,0:17:99:110,0,165,142,187,329 1/2:6,9,7:22:1:222,1,68,44,0,391 0/0:69,0,0:69:0:0,0,1646,0,1646,1646 0/1:10,5,0:15:63:63,0,161,94,177,270 0/1:31,25,0:56:99:398,0,513,491,589,1080 0/1:8,6,0:14:97:97,0,122,122,140,262 0/0:28,0,0:28:0:0,0,584,0,584,584 0/0:32,0,0:32:0:0,0,556,0,556,556 0/0:51,0,0:51:0:0,0,1265,0,1265,1265 0/0:53,0,0:53:0:0,0,1035,0,1035,1035 0/0:42,0,0:42:0:0,0,918,0,918,918 0/0:10,0,0:10:0:0,0,170,0,170,170 0/1:13,19,0:37:99:274,0,572,313,245,556 0/1:11,8,0:19:99:126,0,181,159,206,365 0/1:14,5,0:19:58:58,0,254,101,270,371 0/0:24,0,0:24:0:0,0,418,0,418,418 0/0:25,0,0:25:0:0,0,439,0,439,439 0/1:7,8,0:15:90:124,0,90,144,114,258 0/0:77,0,0:77:7:0,7,1921,7,1921,1921 0/1:4,3,0:7:49:49,0,65,61,74,135 0/0:2,0,0:2:3:0,3,45,3,45,45 0/1:12,8,0:20:99:120,0,200,156,224,380 0/1:16,9,0:25:99:133,0,274,181,301,482 0/1:7,4,0:11:59:59,0,120,81,132,213 0/0:33,0,0:33:0:0,0,665,0,665,665 0/2:4,4,7:15:4:173,48,93,0,4,249 0/0:55,0,0:55:0:0,0,1128,0,1128,1128 1 36357912 . G T 55.53 . AC=1;AF=5.208e-03;AN=192;BaseQRankSum=-1.380e+00;ClippingRankSum=-7.200e-01;DP=721;FS=0.000;InbreedingCoeff=-0.0328;MLEAC=1;MLEAF=5.208e-03;MQ=56.04;MQRankSum=0.00;QD=9.26;ReadPosRankSum=-1.380e+00;SOR=1.329 GT:AD:DP:GQ:PL 0/0:9,0:9:27:0,27,322 0/0:10,0:10:30:0,30,369 0/0:19,0:19:25:0,25,577 0/0:11,0:11:24:0,24,360 0/0:6,0:6:18:0,18,219 0/0:7,0:7:21:0,21,265 0/0:3,0:3:6:0,6,90 0/0:12,0:12:27:0,27,405 0/0:5,0:5:15:0,15,200 0/0:11,0:11:33:0,33,426 0/0:5,0:5:15:0,15,148 0/0:2,0:2:3:0,3,45 ./.:0,0:0 0/0:6,0:6:15:0,15,225 0/0:10,0:10:30:0,30,353 0/0:1,0:1:3:0,3,33 0/0:4,0:4:12:0,12,141 0/0:9,0:9:27:0,27,361 0/0:6,0:6:15:0,15,225 0/0:2,0:2:6:0,6,62 0/0:6,0:6:18:0,18,217 0/0:9,0:9:27:0,27,307 0/0:11,0:11:33:0,33,393 0/0:20,0:20:51:0,51,765 0/0:6,0:6:3:0,3,175 ./.:0,0:0 0/0:6,0:6:18:0,18,182 0/0:8,0:8:24:0,24,280 0/0:12,0:12:36:0,36,406 0/0:4,0:4:12:0,12,144 0/0:3,0:3:6:0,6,90 0/0:8,0:8:18:0,18,270 0/0:3,0:3:9:0,9,106 0/0:4,0:4:12:0,12,123 0/0:6,0:6:18:0,18,213 0/0:9,0:9:21:0,21,315 0/0:9,0:9:27:0,27,324 0/0:7,0:7:21:0,21,241 0/0:4,0:4:6:0,6,90 0/0:2,0:2:3:0,3,45 0/0:4,0:4:12:0,12,113 0/0:1,0:1:3:0,3,40 0/0:7,0:7:15:0,15,225 0/0:5,0:5:15:0,15,183 0/0:9,0:9:27:0,27,323 0/0:12,0:12:33:0,33,495 0/0:9,0:9:27:0,27,356 0/0:15,0:15:42:0,42,630 0/0:8,0:8:21:0,21,315 0/0:5,0:5:15:0,15,195 0/0:2,0:2:6:0,6,70 0/0:7,0:7:21:0,21,248 0/0:6,0:6:12:0,12,180 0/0:7,0:7:21:0,21,248 0/0:1,0:1:3:0,3,32 0/0:1,0:1:3:0,3,29 0/0:12,0:12:36:0,36,405 0/0:22,0:22:60:0,60,900 0/0:5,0:5:15:0,15,158 0/0:3,0:3:9:0,9,112 0/0:14,0:14:36:0,36,540 0/0:7,0:7:21:0,21,250 0/0:8,0:8:21:0,21,315 0/0:6,0:6:18:0,18,220 0/0:5,0:5:15:0,15,171 0/0:8,0:8:18:0,18,270 0/0:6,0:6:18:0,18,219 0/0:6,0:6:15:0,15,225 0/0:8,0:8:18:0,18,270 0/0:5,0:5:15:0,15,130 0/0:8,0:8:18:0,18,270 0/0:3,0:3:9:0,9,102 0/0:11,0:11:33:0,33,386 0/0:14,0:14:28:0,28,490 0/0:13,0:13:36:0,36,540 0/0:7,0:7:18:0,18,270 0/0:5,0:5:15:0,15,175 0/0:19,0:19:48:0,48,720 0/0:11,0:11:27:0,27,405 0/0:8,0:8:21:0,21,315 0/0:10,0:10:27:0,27,405 0/0:8,0:8:21:0,21,315 0/0:5,0:5:12:0,12,180 0/0:8,0:8:24:0,24,302 ./.:0,0:0 0/0:9,0:9:27:0,27,357 0/0:8,0:8:21:0,21,315 0/0:8,0:8:21:0,21,315 0/0:2,0:2:6:0,6,69 0/0:4,0:4:9:0,9,135 0/0:7,0:7:21:0,21,244 0/0:17,0:17:45:0,45,675 0/0:5,0:5:15:0,15,186 ./.:0,0:0 0/0:8,0:8:18:0,18,270 0/0:7,0:7:18:0,18,270 0/0:4,0:4:12:0,12,130 0/0:4,0:4:12:0,12,127 0/0:13,0:13:36:0,36,540 0/1:2,4:6:40:97,0,40 1 36358055 rs72902967 A C 366.75 . AC=1;AF=5.000e-03;AN=200;BaseQRankSum=1.01;ClippingRankSum=-8.290e-01;DB;DP=3349;FS=2.218;InbreedingCoeff=-0.0067;MLEAC=1;MLEAF=5.000e-03;MQ=59.17;MQRankSum=0.967;QD=13.10;ReadPosRankSum=-7.370e-01;SOR=1.609 GT:AD:DP:GQ:PL 0/0:26,0:26:60:0,60,900 0/0:41,0:41:99:0,99,1485 0/0:45,0:45:99:0,101,1530 0/0:38,0:38:99:0,99,1485 0/0:35,0:35:99:0,99,1480 0/0:44,0:44:99:0,102,1530 0/0:27,0:27:72:0,72,1080 0/0:35,0:35:90:0,90,1350 0/0:39,0:39:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:20,0:20:48:0,48,720 0/0:23,0:23:60:0,60,900 0/0:4,0:4:12:0,12,135 0/0:38,0:38:90:0,90,1350 0/0:35,0:35:99:0,99,1261 0/0:32,0:32:78:0,78,1170 0/0:37,0:37:81:0,81,1215 0/0:40,0:40:99:0,105,1366 0/0:42,0:42:99:0,99,1485 0/0:14,0:14:42:0,42,464 0/0:36,0:36:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:23,0:23:54:0,54,810 0/0:43,0:43:99:0,99,1485 0/0:27,0:27:51:0,51,765 0/0:14,0:14:30:0,30,450 0/0:33,0:33:87:0,87,1305 0/0:21,0:21:42:0,42,630 0/0:22,0:22:51:0,51,765 0/0:21,0:21:60:0,60,900 0/0:32,0:32:73:0,73,970 0/0:42,0:42:99:0,99,1454 0/0:27,0:27:60:0,60,900 0/0:24,0:24:57:0,57,855 0/0:38,0:38:99:0,99,1485 0/0:41,0:41:99:0,102,1530 0/0:36,0:36:93:0,93,1395 0/0:37,0:37:99:0,99,1485 0/0:34,0:34:81:0,81,1215 0/0:31,0:31:90:0,90,1350 0/0:20,0:20:45:0,45,675 0/0:21,0:21:57:0,57,855 0/0:25,0:25:60:0,60,900 0/0:28,0:28:57:0,57,855 0/0:25,0:25:60:0,60,900 0/0:45,0:45:99:0,105,1575 0/0:43,0:43:99:0,99,1485 0/0:43,0:43:99:0,102,1530 0/0:39,0:39:99:0,99,1417 0/0:16,0:16:45:0,45,675 0/0:40,0:40:99:0,99,1485 0/0:32,0:32:90:0,90,1350 0/0:40,0:40:99:0,99,1485 0/0:38,0:38:84:0,84,1260 0/0:48,0:48:99:0,102,1530 0/0:2,0:2:6:0,6,58 0/0:38,0:38:99:0,99,1365 0/0:41,0:41:99:0,99,1485 0/0:34,0:34:90:0,90,1350 0/0:38,0:38:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:39,0:39:99:0,102,1406 0/0:39,0:39:99:0,99,1458 0/0:32,0:32:84:0,84,1260 0/0:34,0:34:83:0,83,1209 0/0:32,0:32:90:0,90,1350 0/0:36,0:36:99:0,99,1485 0/0:35,0:35:81:0,81,1215 0/0:29,0:29:72:0,72,1080 0/0:25,0:25:57:0,57,855 0/0:42,0:42:99:0,101,1530 0/0:33,0:33:84:0,84,1260 0/0:43,0:43:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:33,0:33:99:0,99,1188 0/0:42,0:42:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:38,0:38:99:0,99,1265 0/0:41,0:41:99:0,99,1485 0/0:31,0:31:81:0,81,1215 0/0:37,0:37:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:42,0:42:99:0,102,1530 0/0:39,0:39:99:0,99,1485 0/0:10,0:10:27:0,27,405 0/0:37,0:37:99:0,102,1530 0/0:39,0:39:99:0,102,1525 0/0:42,0:42:99:0,117,1800 0/0:25,0:25:54:0,54,810 0/0:27,0:27:66:0,66,990 0/0:40,0:40:99:0,102,1530 0/0:46,0:46:99:0,99,1485 0/1:15,13:28:99:409,0,451 0/0:4,0:4:12:0,12,139 0/0:40,0:40:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:28,0:28:72:0,72,1080 0/0:31,0:31:81:0,81,1215 0/0:45,0:45:99:0,102,1530 0/0:46,0:46:99:0,105,1575 1 36359669 rs2296470 A G 947.79 . AC=2;AF=0.010;AN=200;BaseQRankSum=-1.817e+00;ClippingRankSum=0.327;DB;DP=3836;FS=0.000;InbreedingCoeff=-0.0115;MLEAC=2;MLEAF=0.010;MQ=59.44;MQRankSum=0.952;QD=13.94;ReadPosRankSum=1.35;SOR=0.829 GT:AD:DP:GQ:PL 0/0:39,0:39:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:40,0:40:81:0,81,1215 0/0:38,0:38:99:0,99,1485 0/0:43,0:43:84:0,84,1260 0/0:42,0:42:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:39,0:39:96:0,96,1440 0/0:9,0:9:18:0,18,270 0/0:40,0:40:93:0,93,1395 0/0:42,0:42:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:39,0:39:99:0,102,1530 0/0:37,0:37:81:0,81,1215 0/0:47,0:47:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:37,0:37:78:0,78,1170 0/0:40,0:40:99:0,102,1530 0/0:31,0:31:53:0,53,1071 0/0:37,0:37:99:0,99,1485 0/0:35,0:35:90:0,90,1350 0/0:42,0:42:90:0,90,1350 0/0:36,0:36:81:0,81,1215 0/0:42,0:42:84:0,84,1260 0/0:40,0:40:90:0,90,1350 0/0:41,0:41:99:0,99,1485 0/0:31,0:31:60:0,60,900 0/0:31,0:31:57:0,57,855 0/0:40,0:40:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:39,0:39:81:0,81,1215 0/0:40,0:40:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:40,0:40:90:0,90,1321 0/0:35,0:35:70:0,70,1203 0/0:28,0:28:63:0,63,945 0/0:35,0:35:81:0,81,1215 0/0:36,0:36:75:0,75,1125 0/0:42,0:42:90:0,90,1350 0/0:38,0:38:99:0,99,1395 0/0:42,0:42:99:0,102,1530 0/0:39,0:39:99:0,102,1504 0/0:42,0:42:99:0,99,1485 0/0:30,0:30:78:0,78,1170 0/0:37,0:37:87:0,87,1305 0/0:39,0:39:90:0,90,1350 0/0:41,0:41:99:0,105,1575 0/1:19,22:41:99:678,0,587 0/0:42,0:42:99:0,99,1485 0/0:5,0:5:12:0,12,180 0/0:44,0:44:99:0,102,1530 0/0:39,0:39:99:0,99,1485 0/0:23,0:23:57:0,57,855 0/0:39,0:39:93:0,93,1395 0/0:45,0:45:99:0,105,1462 0/0:42,0:42:99:0,102,1530 0/0:49,0:49:93:0,93,1395 0/0:27,0:27:63:0,63,945 0/0:44,0:44:90:0,90,1350 0/0:46,0:46:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:38,0:38:69:0,69,1035 0/0:35,0:35:90:0,90,1350 0/0:46,0:46:99:0,100,1675 0/0:45,0:45:93:0,93,1395 0/0:38,0:38:99:0,99,1427 0/0:44,0:44:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:37,0:37:99:0,99,1485 0/0:44,0:44:99:0,101,1530 0/0:43,0:43:99:0,108,1591 0/0:42,0:42:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:40,0:40:99:0,99,1470 0/0:39,0:39:99:0,102,1530 0/0:13,0:13:27:0,27,405 0/0:40,0:40:99:0,99,1485 0/0:41,0:41:99:0,99,1477 0/0:42,0:42:99:0,102,1367 0/1:15,12:27:99:329,0,493 0/0:30,0:30:72:0,72,1080 0/0:42,0:42:99:0,102,1530 0/0:42,0:42:99:0,105,1551 0/0:32,0:32:81:0,81,1215 0/0:2,0:2:6:0,6,63 0/0:43,0:43:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:38,0:38:87:0,87,1305 0/0:45,0:45:99:0,111,1665 0/0:43,0:43:99:0,105,1575 1 36367377 rs2297957 A G 1099.91 . AC=2;AF=0.010;AN=200;BaseQRankSum=3.08;ClippingRankSum=0.550;DB;DP=3727;FS=1.902;InbreedingCoeff=-0.0142;MLEAC=2;MLEAF=0.010;MQ=60.00;MQRankSum=1.68;QD=12.94;ReadPosRankSum=-7.990e-01;SOR=0.449 GT:AD:DP:GQ:PL 0/0:38,0:38:99:0,102,1530 0/0:45,0:45:99:0,102,1530 0/0:41,0:41:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:47,0:47:99:0,99,1485 0/0:41,0:41:99:0,105,1575 0/0:41,0:41:99:0,99,1485 0/0:40,0:40:99:0,99,1456 0/0:44,0:44:99:0,99,1485 0/0:39,0:39:99:0,99,1453 0/0:40,0:40:90:0,90,1350 0/0:41,0:41:99:0,99,1485 0/0:1,0:1:3:0,3,34 0/0:41,0:41:99:0,99,1485 0/0:38,0:38:90:0,90,1350 0/0:43,0:43:99:0,99,1485 0/0:46,0:46:93:0,93,1395 0/0:38,0:38:99:0,99,1485 0/0:47,0:47:99:0,105,1575 0/0:34,0:34:90:0,90,1350 0/0:42,0:42:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:37,0:37:99:0,99,1314 0/0:30,0:30:81:0,81,1215 0/0:44,0:44:99:0,111,1665 0/0:39,0:39:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:32,0:32:81:0,81,1215 0/0:38,0:38:90:0,90,1350 0/0:36,0:36:93:0,93,1395 0/0:43,0:43:99:0,99,1485 0/0:37,0:37:99:0,99,1485 0/0:37,0:37:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:37,0:37:99:0,102,1530 0/0:40,0:40:99:0,99,1485 0/0:36,0:36:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:40,0:40:99:0,105,1575 0/0:37,0:37:99:0,99,1485 0/0:27,0:27:60:0,60,900 0/0:36,0:36:84:0,84,1260 0/0:31,0:31:81:0,81,1215 0/0:39,0:39:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:46,0:46:99:0,102,1530 0/0:37,0:37:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:21,0:21:57:0,57,855 0/0:42,0:42:99:0,102,1530 0/0:31,0:31:81:0,81,1215 0/0:29,0:29:72:0,72,1080 0/1:33,23:56:99:727,0,1028 0/0:39,0:39:99:0,99,1427 0/0:1,0:1:3:0,3,36 0/0:34,0:34:99:0,99,1176 0/0:37,0:37:99:0,99,1485 0/0:29,0:29:72:0,72,1080 0/0:42,0:42:99:0,102,1530 0/0:34,0:34:99:0,99,1415 0/0:37,0:37:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:31,0:31:66:0,66,990 0/0:37,0:37:75:0,75,1125 0/0:40,0:40:99:0,99,1485 0/0:33,0:33:81:0,81,1215 0/0:37,0:37:93:0,93,1395 0/0:37,0:37:99:0,99,1406 0/0:30,0:30:81:0,81,1215 0/0:42,0:42:99:0,99,1485 0/0:28,0:28:72:0,72,978 0/0:46,0:46:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:41,0:41:99:0,102,1530 0/0:41,0:41:99:0,99,1485 0/0:41,0:41:99:0,102,1530 0/0:43,0:43:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:49,0:49:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:20,0:20:60:0,60,755 0/0:36,0:36:99:0,99,1485 0/0:36,0:36:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/1:15,14:29:99:432,0,467 0/0:23,0:23:57:0,57,855 0/0:39,0:39:99:0,99,1485 0/0:40,0:40:99:0,108,1493 0/0:34,0:34:90:0,90,1350 0/0:2,0:2:6:0,6,69 0/0:42,0:42:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:34,0:34:72:0,72,1080 0/0:34,0:34:90:0,90,1350 0/0:42,0:42:99:0,99,1485 0/0:43,0:43:99:0,102,1330 1 36367665 rs61751003 C T 581.04 . AC=2;AF=0.010;AN=200;BaseQRankSum=1.48;ClippingRankSum=-2.820e-01;DB;DP=2953;FS=0.000;InbreedingCoeff=-0.0167;MLEAC=2;MLEAF=0.010;MQ=58.95;MQRankSum=0.447;QD=10.19;ReadPosRankSum=-7.000e-02;SOR=0.698 GT:AD:DP:GQ:PL 0/0:28,0:28:72:0,72,1080 0/0:45,0:45:99:0,102,1530 0/0:41,0:41:99:0,99,1485 0/0:38,0:38:75:0,75,1125 0/0:38,0:38:78:0,78,1170 0/0:41,0:41:99:0,105,1575 0/0:30,0:30:50:0,50,979 0/0:31,0:31:72:0,72,1080 0/1:19,16:35:99:450,0,575 0/0:37,0:37:72:0,72,1080 0/0:27,0:27:60:0,60,900 0/0:29,0:29:48:0,48,956 0/0:5,0:5:1:0,1,133 0/0:14,0:14:33:0,33,495 0/0:21,0:21:45:0,45,675 0/0:23,0:23:60:0,60,829 0/0:31,0:31:63:0,63,945 0/0:45,0:45:72:0,72,1080 0/0:47,0:47:99:0,105,1575 0/0:43,0:43:99:0,99,1440 0/0:42,0:42:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:22,0:22:48:0,48,720 0/0:37,0:37:99:0,99,1314 0/0:20,0:20:48:0,48,720 0/0:45,0:45:99:0,99,1485 0/0:19,0:19:39:0,39,585 0/0:18,0:18:36:0,36,540 0/0:26,0:26:60:0,60,900 0/0:28,0:28:60:0,60,900 0/0:15,0:15:27:0,27,405 0/0:27,0:27:43:0,43,845 0/0:22,0:22:57:0,57,855 0/0:16,0:16:33:0,33,495 0/0:43,0:43:99:0,99,1485 0/0:37,0:37:99:0,102,1530 0/0:25,0:25:51:0,51,765 0/0:38,0:38:90:0,90,1350 0/0:25,0:25:51:0,51,765 0/0:26,0:26:39:0,39,851 0/0:19,0:19:45:0,45,675 0/0:24,0:24:51:0,51,765 0/0:21,0:21:27:0,27,661 0/0:18,0:18:39:0,39,585 0/0:23,0:23:54:0,54,810 0/0:42,0:42:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:37,0:37:99:0,99,1485 0/0:30,0:30:72:0,72,1080 0/0:20,0:20:45:0,45,675 0/0:29,0:29:60:0,60,900 0/0:23,0:23:54:0,54,810 0/0:22,0:22:45:0,45,706 0/0:25,0:25:60:0,60,900 0/0:21,0:21:51:0,51,765 0/0:3,0:3:9:0,9,104 0/0:34,0:34:99:0,99,1176 0/0:37,0:37:99:0,99,1485 0/0:14,0:14:30:0,30,450 0/0:21,0:21:36:0,36,540 0/0:34,0:34:99:0,99,1415 0/0:32,0:32:66:0,66,990 0/0:25,0:25:51:0,51,765 0/0:19,0:19:39:0,39,585 0/0:27,0:27:63:0,63,945 0/1:15,7:22:99:190,0,447 0/0:29,0:29:56:0,56,998 0/0:28,0:28:72:0,72,1080 0/0:25,0:25:60:0,60,900 0/0:17,0:17:45:0,45,675 0/0:37,0:37:72:0,72,1080 0/0:24,0:24:60:0,60,900 0/0:39,0:39:90:0,90,1350 0/0:38,0:38:99:0,99,1485 0/0:41,0:41:99:0,102,1530 0/0:41,0:41:99:0,99,1485 0/0:32,0:32:72:0,72,1080 0/0:43,0:43:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:36,0:36:90:0,90,1350 0/0:49,0:49:99:0,99,1485 0/0:41,0:41:93:0,93,1395 0/0:37,0:37:81:0,81,1215 0/0:30,0:30:63:0,63,945 0/0:7,0:7:18:0,18,270 0/0:36,0:36:99:0,99,1485 0/0:36,0:36:99:0,99,1485 0/0:42,0:42:90:0,90,1350 0/0:25,0:25:0:0,0,701 0/0:9,0:9:18:0,18,270 0/0:30,0:30:60:0,60,900 0/0:40,0:40:99:0,108,1493 0/0:20,0:20:51:0,51,765 0/0:2,0:2:6:0,6,73 0/0:42,0:42:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:20,0:20:39:0,39,585 0/0:25,0:25:48:0,48,720 0/0:40,0:40:81:0,81,1215 0/0:23,0:23:63:0,63,945 1 36367780 rs595961 A G 15998.79 . AC=31;AF=0.155;AN=200;BaseQRankSum=0.940;ClippingRankSum=-1.880e-01;DB;DP=3228;FS=0.558;InbreedingCoeff=0.1702;MLEAC=32;MLEAF=0.160;MQ=58.70;MQRankSum=0.146;QD=17.06;ReadPosRankSum=0.370;SOR=0.595 GT:AD:DP:GQ:PL 0/1:18,11:29:99:318,0,564 0/0:45,0:45:99:0,102,1530 0/1:6,43:49:49:1326,0,49 0/0:31,0:31:69:0,69,1035 0/0:37,0:37:90:0,90,1350 0/1:41,25:66:99:684,0,1254 0/0:28,0:28:72:0,72,1080 0/0:30,0:30:63:0,63,945 0/0:40,0:40:99:0,102,1530 0/0:28,0:28:60:0,60,900 0/0:25,0:25:60:0,60,900 0/0:17,0:17:33:0,33,495 0/0:11,0:11:0:0,0,262 0/0:39,0:39:81:0,81,1215 0/0:22,0:22:54:0,54,810 0/1:17,16:33:99:465,0,445 0/0:37,0:37:81:0,81,1215 0/0:36,0:36:81:0,81,1215 0/0:38,0:38:84:0,84,1260 0/0:43,0:43:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:55,0:55:44:0,44,1755 0/0:25,0:25:54:0,54,810 0/0:37,0:37:99:0,99,1314 0/0:20,0:20:48:0,48,720 0/0:45,0:45:99:0,99,1485 0/0:19,0:19:42:0,42,630 0/0:31,0:31:72:0,72,1080 0/0:31,0:31:78:0,78,1170 0/1:22,14:36:99:392,0,654 0/1:13,16:29:99:520,0,367 0/0:27,0:27:57:0,57,855 0/0:18,0:18:54:0,54,630 0/0:21,0:21:60:0,60,900 0/0:41,0:41:99:0,99,1485 0/0:37,0:37:99:0,102,1530 0/0:34,0:34:81:0,81,1215 0/0:38,0:38:72:0,72,1080 0/1:17,11:28:99:314,0,546 0/0:37,0:37:75:0,75,1125 0/0:13,0:13:33:0,33,495 1/1:0,17:17:51:656,51,0 0/0:26,0:26:60:0,60,900 0/0:22,0:22:48:0,48,720 0/1:10,7:17:99:225,0,311 0/0:40,0:40:91:0,91,1343 0/0:42,0:42:99:0,99,1485 0/0:41,0:41:99:0,102,1530 0/1:16,13:29:99:381,0,502 1/1:0,28:28:84:1057,84,0 0/0:34,0:34:81:0,81,1215 0/0:23,0:23:60:0,60,900 0/0:19,0:19:48:0,48,720 1/1:0,33:33:99:1205,99,0 0/0:46,0:46:99:0,102,1530 0/0:6,0:6:12:0,12,180 0/1:28,30:58:99:839,0,785 0/0:67,0:67:84:0,84,2122 0/0:19,0:19:43:0,43,643 0/0:26,0:26:60:0,60,900 1/1:3,44:47:31:1426,31,0 0/0:30,0:30:66:0,66,990 0/1:20,13:33:99:372,0,634 0/0:24,0:24:66:0,66,990 0/0:22,0:22:45:0,45,675 0/1:17,20:37:99:640,0,518 0/0:22,0:22:51:0,51,765 0/0:33,0:33:81:0,81,1215 0/0:23,0:23:51:0,51,765 0/0:21,0:21:42:0,42,630 0/1:35,28:63:99:825,0,1058 0/0:26,0:26:57:0,57,855 0/0:45,0:45:99:0,99,1485 0/0:44,0:44:99:0,102,1530 0/1:26,18:44:99:481,0,693 0/1:29,22:51:99:605,0,834 0/0:31,0:31:81:0,81,1215 0/0:43,0:43:99:0,99,1485 0/0:41,0:41:99:0,99,1464 0/0:21,0:21:39:0,39,585 0/0:39,0:39:99:0,99,1485 0/1:20,20:40:99:583,0,601 0/1:16,11:27:99:342,0,505 0/1:12,17:29:99:488,0,350 0/0:9,0:9:18:0,18,270 0/0:36,0:36:99:0,99,1485 0/0:36,0:36:99:0,99,1485 0/1:15,20:35:99:590,0,421 0/0:12,0:12:0:0,0,294 0/0:25,0:25:60:0,60,900 0/1:19,16:35:99:498,0,604 0/0:40,0:40:99:0,108,1493 1/1:0,19:19:57:719,57,0 0/0:1,0:1:3:0,3,34 0/0:41,0:41:99:0,99,1485 0/0:37,0:37:99:0,99,1449 0/0:23,0:23:4:0,4,703 0/0:24,0:24:57:0,57,855 0/0:34,0:34:81:0,81,1215 0/1:13,13:26:99:366,0,315 1 36372409 . GA G 1464.59 . AC=16;AF=0.082;AN=194;BaseQRankSum=0.545;ClippingRankSum=0.196;DP=2717;FS=0.000;InbreedingCoeff=-0.3888;MLEAC=24;MLEAF=0.124;MQ=52.40;MQRankSum=0.634;QD=5.31;ReadPosRankSum=0.154;SOR=0.221 GT:AD:DP:GQ:PL 0/0:34,0:34:0:0,0,600 0/1:12,5:23:99:109,0,207 0/1:8,6:14:96:96,0,145 0/0:22,0:22:0:0,0,419 0/0:25,0:25:0:0,0,294 0/1:10,6:16:95:95,0,184 0/0:27,0:27:0:0,0,362 0/0:21,0:21:0:0,0,281 0/0:21,0:21:0:0,0,97 0/0:80,0:80:0:0,0,1144 0/0:19,0:19:0:0,0,207 0/0:14,0:14:0:0,0,86 0/0:1,0:1:3:0,3,28 0/0:19,0:19:0:0,0,268 ./.:17,0:17 0/0:17,0:17:0:0,0,385 0/0:20,0:20:0:0,0,258 0/0:29,0:29:0:0,0,555 0/0:45,0:45:0:0,0,975 0/0:6,0:6:0:0,0,132 0/1:5,5:10:87:87,0,87 0/1:7,5:12:79:79,0,126 0/0:12,0:12:0:0,0,199 0/1:19,7:26:81:81,0,356 0/0:27,0:27:0:0,0,294 0/0:24,0:24:0:0,0,234 0/0:21,0:21:0:0,0,420 0/1:12,4:16:48:48,0,226 0/0:15,0:15:0:0,0,167 0/0:16,0:16:0:0,0,190 0/0:14,0:14:2:0,2,428 0/0:21,0:21:0:0,0,182 0/0:21,0:21:0:0,0,442 0/0:18,0:18:0:0,0,364 0/1:7,7:14:99:126,0,118 0/0:59,0:59:0:0,0,973 0/0:20,0:20:0:0,0,303 ./.:16,0:16 0/0:18,0:18:0:0,0,359 0/0:15,0:15:0:0,0,394 0/0:13,0:13:0:0,0,264 0/0:8,0:8:0:0,0,150 0/0:25,0:25:0:0,0,694 0/0:26,0:26:0:0,0,294 0/0:11,0:11:0:0,0,305 0/0:39,0:39:0:0,0,837 0/0:37,0:37:0:0,0,649 0/0:51,0:51:0:0,0,905 0/0:23,0:23:0:0,0,572 0/0:18,0:18:0:0,0,327 0/0:18,0:18:0:0,0,116 0/0:24,0:24:0:0,0,441 0/0:32,0:32:0:0,0,784 0/0:26,0:26:0:0,0,672 0/1:18,4:22:30:30,0,344 0/0:2,0:2:6:0,6,69 0/0:51,0:51:0:0,0,998 0/0:56,0:56:0:0,0,1039 0/0:16,0:16:0:0,0,399 0/0:22,0:22:0:0,0,464 0/0:34,0:34:0:0,0,24 ./.:20,0:20 0/0:14,0:14:0:0,0,46 0/0:14,0:14:0:0,0,161 0/0:18,0:18:0:0,0,281 0/0:19,0:19:0:0,0,184 0/0:22,0:22:0:0,0,409 0/0:24,0:24:0:0,0,353 0/0:11,0:11:0:0,0,257 0/0:14,0:14:0:0,0,25 0/1:9,5:14:69:69,0,165 0/0:20,0:20:0:0,0,345 0/0:26,0:29:78:0,78,744 0/0:58,0:58:0:0,0,927 0/0:24,0:24:0:0,0,355 0/1:9,6:15:96:96,0,160 0/0:22,0:22:34:0,34,777 0/1:19,9:28:99:127,0,355 0/0:45,0:45:0:0,0,1029 0/0:23,0:23:0:0,0,311 0/1:10,7:17:99:105,0,177 0/0:29,0:29:11:0,11,862 0/0:29,0:29:0:0,0,591 0/0:9,0:9:0:0,0,33 0/1:22,9:31:99:120,0,420 0/0:49,0:49:0:0,0,1012 0/0:30,0:30:0:0,0,320 0/0:9,0:9:0:0,0,42 0/0:16,0:16:0:0,0,292 0/1:4,4:8:69:69,0,70 0/1:11,5:16:69:69,0,205 0/0:24,0:24:0:0,0,409 0/0:1,0:1:3:0,3,37 0/0:25,0:25:0:0,0,212 0/0:24,0:24:0:0,0,440 0/0:24,0:24:0:0,0,561 0/0:19,0:19:0:0,0,266 0/0:46,0:46:0:0,0,1012 0/0:28,0:28:0:0,0,229 1 36372731 . C T 1444.79 . AC=1;AF=5.000e-03;AN=200;BaseQRankSum=-6.900e-02;ClippingRankSum=0.783;DP=3948;FS=0.811;InbreedingCoeff=-0.0078;MLEAC=1;MLEAF=5.000e-03;MQ=57.65;MQRankSum=-2.130e-01;QD=14.89;ReadPosRankSum=0.696;SOR=0.556 GT:AD:DP:GQ:PL 0/0:40,0:40:99:0,102,1530 0/0:35,0:35:99:0,99,1405 0/0:41,0:41:99:0,105,1575 0/0:35,0:35:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:41,0:41:99:0,99,1339 0/0:41,0:41:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:34,0:34:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:38,0:38:81:0,81,1215 0/0:2,0:2:6:0,6,73 0/0:42,0:42:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:47,0:47:99:0,102,1530 0/0:40,0:40:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/1:48,49:97:99:1487,0,1365 0/0:21,0:21:57:0,57,855 0/0:43,0:43:99:0,99,1485 0/0:41,0:41:99:0,99,1303 0/0:40,0:40:99:0,99,1485 0/0:50,0:50:99:0,105,1575 0/0:43,0:43:87:0,87,1305 0/0:41,0:41:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:38,0:38:90:0,90,1350 0/0:38,0:38:99:0,99,1485 0/0:43,0:43:99:0,102,1530 0/0:23,0:23:57:0,57,855 0/0:45,0:45:99:0,99,1485 0/0:46,0:46:99:0,99,1485 0/0:46,0:46:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:44,0:44:99:0,102,1530 0/0:39,0:39:99:0,102,1530 0/0:34,0:34:64:0,64,1243 0/0:29,0:29:81:0,81,1215 0/0:44,0:44:99:0,99,1485 0/0:37,0:37:81:0,81,1215 0/0:42,0:42:86:0,86,1496 0/0:36,0:36:99:0,99,1262 0/0:37,0:37:99:0,102,1530 0/0:40,0:40:99:0,99,1333 0/0:44,0:44:99:0,99,1485 0/0:36,0:36:90:0,90,1350 0/0:45,0:45:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:41,0:41:99:0,102,1530 0/0:43,0:43:99:0,99,1485 0/0:49,0:49:99:0,99,1485 0/0:3,0:3:9:0,9,87 0/0:44,0:44:99:0,99,1387 0/0:50,0:50:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:41,0:41:99:0,102,1530 0/0:37,0:37:99:0,102,1384 0/0:43,0:43:99:0,102,1530 0/0:38,0:38:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:46,0:46:99:0,102,1530 0/0:37,0:37:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:39,0:39:99:0,102,1349 0/0:39,0:39:99:0,102,1530 0/0:41,0:41:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:34,0:34:99:0,99,1485 0/0:37,0:37:99:0,105,1575 0/0:34,0:34:99:0,99,1211 0/0:38,0:38:99:0,99,1359 0/0:36,0:36:99:0,102,1530 0/0:49,0:49:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:50,0:50:99:0,108,1620 0/0:50,0:50:99:0,99,1485 0/0:34,0:34:99:0,99,1414 0/0:35,0:35:99:0,99,1485 0/0:22,0:22:51:0,51,765 0/0:52,0:52:99:0,99,1485 0/0:39,0:39:99:0,105,1575 0/0:35,0:35:99:0,99,1204 0/0:28,0:28:72:0,72,1080 0/0:34,0:34:99:0,99,1485 0/0:37,0:37:99:0,99,1327 0/0:45,0:45:99:0,108,1620 0/0:50,0:50:90:0,90,1350 0/0:1,0:1:3:0,3,32 0/0:44,0:44:99:0,100,1530 0/0:35,0:35:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:42,0:42:99:0,102,1530 0/0:40,0:40:99:0,99,1485 1 36380133 rs595055 T C 3051.38 . AC=21;AF=0.112;AN=188;BaseQRankSum=0.720;ClippingRankSum=0.289;DB;DP=881;FS=0.000;InbreedingCoeff=0.1481;MLEAC=23;MLEAF=0.122;MQ=60.00;MQRankSum=0.118;QD=17.54;ReadPosRankSum=1.13;SOR=1.065 GT:AD:DP:GQ:PL 0/1:3,5:8:90:150,0,90 0/0:11,0:11:21:0,21,315 0/1:2,9:11:36:295,0,36 0/0:9,0:9:9:0,9,135 0/0:13,0:13:13:0,13,438 0/1:8,4:12:99:118,0,232 0/0:7,0:7:15:0,15,225 0/0:9,0:9:15:0,15,225 0/0:6,0:6:12:0,12,180 0/0:6,0:6:18:0,18,212 0/0:6,0:6:18:0,18,216 0/0:9,0:9:21:0,21,315 ./.:0,0:0 0/0:9,0:9:21:0,21,315 0/0:9,0:9:27:0,27,318 0/1:2,8:10:48:234,0,48 0/0:2,0:2:6:0,6,79 0/0:13,0:13:21:0,21,315 0/0:13,0:13:33:0,33,495 0/0:3,0:3:6:0,6,90 0/0:9,0:9:18:0,18,270 0/0:5,0:5:15:0,15,167 0/0:12,0:12:24:0,24,360 0/0:18,0:18:48:0,48,720 0/0:10,0:10:30:0,30,311 0/0:3,0:3:9:0,9,93 0/0:10,0:10:24:0,24,360 0/0:7,0:7:21:0,21,260 0/0:4,0:4:9:0,9,135 0/0:5,0:5:0:0,0,109 1/1:0,4:4:12:155,12,0 0/0:9,0:9:15:0,15,225 0/0:10,0:10:24:0,24,360 0/0:8,0:8:18:0,18,270 0/0:5,0:5:15:0,15,165 0/0:27,0:27:48:0,48,720 0/0:6,0:6:18:0,18,236 0/0:6,0:6:15:0,15,225 0/0:8,0:8:0:0,0,77 0/0:12,0:12:27:0,27,405 0/0:5,0:5:15:0,15,185 1/1:0,5:5:15:197,15,0 0/0:4,0:4:12:0,12,151 0/0:3,0:3:3:0,3,45 0/1:5,5:10:99:157,0,149 0/0:14,0:14:30:0,30,450 0/0:17,0:17:27:0,27,405 0/0:20,0:20:45:0,45,675 0/1:6,5:11:99:157,0,192 ./.:1,0:1 0/0:4,0:4:6:0,6,90 0/0:1,0:1:3:0,3,36 0/0:11,0:11:24:0,24,360 1/1:0,7:7:21:237,21,0 0/0:3,0:3:9:0,9,117 ./.:0,0:0 0/1:10,5:15:99:151,0,281 0/0:15,0:15:30:0,30,498 0/0:3,0:3:9:0,9,102 0/0:6,0:6:12:0,12,180 1/1:0,9:9:27:329,27,0 0/0:4,0:4:12:0,12,156 0/1:2,4:6:56:130,0,56 0/0:3,0:3:9:0,9,107 0/0:5,0:5:9:0,9,135 ./.:5,0:5 0/0:7,0:7:21:0,21,265 0/0:8,0:8:15:0,15,225 0/0:9,0:9:15:0,15,225 0/0:2,0:2:6:0,6,64 0/1:9,8:17:99:257,0,287 0/0:1,0:1:3:0,3,37 0/0:11,0:11:21:0,21,315 0/0:13,0:13:18:0,18,270 0/0:6,0:6:0:0,0,73 0/1:7,6:13:99:171,0,214 0/0:11,0:11:24:0,24,360 0/0:36,0:36:81:0,81,1215 0/0:14,0:14:24:0,24,360 0/0:8,0:8:18:0,18,270 0/0:9,0:9:18:0,18,270 0/0:5,0:5:0:0,0,65 0/1:8,7:15:99:226,0,240 0/0:7,0:7:0:0,0,183 0/0:4,0:4:6:0,6,90 0/0:29,0:29:60:0,60,900 0/0:19,0:19:36:0,36,540 0/1:7,6:13:99:188,0,221 ./.:2,0:2 0/0:1,0:1:3:0,3,28 0/1:4,4:8:99:140,0,125 0/0:16,0:16:30:0,30,450 0/0:5,0:5:0:0,0,106 0/0:1,0:1:3:0,3,32 0/0:7,0:7:9:0,9,135 0/0:18,0:18:33:0,33,495 0/0:13,0:13:21:0,21,315 0/0:9,0:9:24:0,24,360 0/0:9,0:9:24:0,24,360 ./.:3,0:3 1 36380971 rs72661618 A C 141.98 . AC=6;AF=0.030;AN=200;BaseQRankSum=-4.467e+00;ClippingRankSum=0.198;DB;DP=4824;FS=283.524;InbreedingCoeff=-0.0774;MLEAC=6;MLEAF=0.030;MQ=58.13;MQRankSum=-3.290e-01;QD=0.35;ReadPosRankSum=-1.045e+00;SOR=6.911 GT:AD:DP:GQ:PL 0/0:50,0:50:31:0,31,1502 0/0:93,0:93:53:0,53,2725 0/0:75,0:75:96:0,96,2289 0/0:74,0:74:27:0,27,2121 0/0:39,0:39:26:0,26,1203 0/0:39,0:39:99:0,99,1485 0/0:35,0:35:0:0,0,888 0/0:39,0:39:0:0,0,1074 0/0:37,0:37:99:0,99,1485 0/0:41,0:41:99:0,102,1575 0/0:34,0:34:25:0,25,1065 0/0:40,0:40:65:0,65,1371 0/0:4,0:4:12:0,12,148 0/0:57,0:57:30:0,30,1648 0/0:40,0:40:25:0,25,1121 0/0:44,0:44:61:0,61,1289 0/0:51,0:51:0:0,0,1224 0/0:52,0:52:59:0,59,1530 0/0:38,0:38:99:0,99,1485 0/0:14,0:14:36:0,36,540 0/0:62,0:62:84:0,84,1946 0/0:82,0:82:17:0,17,2189 0/1:32,12:44:30:30,0,931 0/0:140,0:140:44:0,44,4002 0/0:33,0:33:78:0,78,1170 0/0:38,0:38:99:0,99,1485 0/0:46,0:46:14:0,14,1311 0/0:50,0:50:0:0,0,1413 0/0:28,0:28:19:0,19,849 0/0:42,0:42:99:0,99,1485 0/0:32,0:32:28:0,28,964 0/0:51,0:51:49:0,49,1546 0/0:27,0:27:0:0,0,702 0/1:28,10:38:67:67,0,913 0/0:51,0:51:22:0,22,1380 0/0:115,0:115:85:0,85,3410 0/0:43,0:43:79:0,79,1424 0/0:55,0:55:77:0,77,1629 0/0:46,0:46:0:0,0,1234 0/0:43,0:43:45:0,45,1384 0/0:29,0:29:23:0,23,905 0/0:33,0:33:0:0,0,922 0/1:30,13:43:17:17,0,949 0/0:30,0:30:0:0,0,789 0/0:28,0:28:45:0,45,962 0/0:72,0:72:87:0,87,2188 0/0:39,0:39:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:55,0:55:10:0,10,1393 0/0:19,0:19:27:0,27,616 0/0:44,0:44:19:0,19,1262 0/0:29,0:29:32:0,32,910 0/0:40,0:40:0:0,0,1074 0/0:39,0:39:0:0,0,1082 0/0:66,0:66:99:0,120,1800 0/0:4,0:4:9:0,9,135 0/1:67,17:84:45:45,0,2066 0/0:107,0:107:63:0,63,3231 0/0:20,0:20:10:0,10,575 0/0:41,0:41:18:0,18,1166 0/0:69,0:69:74:0,74,2115 0/0:42,0:42:73:0,73,1375 0/0:46,0:46:26:0,26,1290 0/0:30,0:30:13:0,13,833 0/1:30,9:39:39:39,0,978 0/0:55,0:55:33:0,33,1616 0/0:33,0:33:0:0,0,890 0/0:33,0:33:44:0,44,969 0/0:32,0:32:43:0,43,937 0/0:31,0:31:30:0,30,898 0/0:74,0:74:96:0,96,2365 0/0:27,0:27:26:0,26,834 0/0:37,0:37:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:71,0:71:36:0,36,1998 0/0:83,0:83:85:0,85,2611 0/0:52,0:52:78:0,78,1763 0/0:42,0:42:99:0,114,1604 0/0:85,0:85:94:0,94,2621 0/0:42,0:42:36:0,36,1247 0/0:51,0:51:55:0,55,1549 0/0:59,0:59:89:0,89,1792 0/0:58,0:58:0:0,0,1575 0/0:39,0:39:35:0,35,1133 0/0:16,0:16:0:0,0,394 0/1:127,35:162:51:51,0,3848 0/0:40,0:40:99:0,102,1530 0/0:74,0:74:12:0,12,2115 0/0:30,0:30:22:0,22,922 0/0:26,0:26:0:0,0,599 0/0:47,0:47:56:0,56,1485 0/0:110,0:110:26:0,26,3202 0/0:31,0:31:17:0,17,859 0/0:2,0:2:6:0,6,72 0/0:54,0:54:12:0,12,1558 0/0:70,0:70:89:0,89,2118 0/0:34,0:34:0:0,0,920 0/0:41,0:41:38:0,38,1261 0/0:41,0:41:99:0,99,1485 0/0:37,0:37:99:0,100,1530 1 36381165 rs116539156 G A 3037.58 . AC=3;AF=0.015;AN=200;BaseQRankSum=-2.850e+00;ClippingRankSum=0.495;DB;DP=4155;FS=3.321;InbreedingCoeff=-0.0158;MLEAC=3;MLEAF=0.015;MQ=58.48;MQRankSum=0.819;QD=13.38;ReadPosRankSum=-1.220e+00;SOR=0.483 GT:AD:DP:GQ:PL 0/0:41,0:41:99:0,99,1485 0/0:46,0:46:99:0,108,1620 0/0:48,0:48:99:0,108,1620 0/0:52,0:52:99:0,107,1620 0/0:40,0:40:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:47,0:47:99:0,99,1485 0/0:37,0:37:99:0,99,1485 0/0:41,0:41:99:0,102,1575 0/0:41,0:41:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:6,0:6:18:0,18,220 0/0:45,0:45:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/1:24,22:46:99:675,0,737 0/0:44,0:44:99:0,102,1530 0/0:48,0:48:99:0,102,1530 0/0:38,0:38:99:0,99,1485 0/0:15,0:15:39:0,39,585 0/0:49,0:49:99:0,102,1530 0/0:42,0:42:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:54,0:54:99:0,105,1575 0/0:34,0:34:66:0,66,1228 0/0:38,0:38:99:0,99,1485 0/0:33,0:33:87:0,87,1305 0/0:38,0:38:99:0,102,1530 0/0:40,0:40:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:41,0:41:96:0,96,1440 0/0:38,0:38:99:0,99,1485 0/0:39,0:39:99:0,99,1425 0/0:37,0:37:75:0,75,1250 0/0:52,0:52:99:0,114,1710 0/0:41,0:41:99:0,102,1530 0/0:48,0:48:99:0,105,1575 0/0:50,0:50:99:0,107,1665 0/0:49,0:49:99:0,102,1530 0/0:44,0:44:99:0,99,1485 0/0:28,0:28:81:0,81,1215 0/0:37,0:37:99:0,99,1485 0/0:42,0:42:99:0,99,1530 0/0:39,0:39:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:45,0:45:99:0,102,1530 0/0:39,0:39:90:0,90,1350 0/0:45,0:45:99:0,102,1462 0/0:42,0:42:84:0,84,1260 0/0:42,0:42:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:44,0:44:99:0,101,1755 0/0:5,0:5:12:0,12,180 0/0:44,0:44:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:38,0:38:93:0,93,1395 0/0:36,0:36:90:0,90,1350 0/0:45,0:45:99:0,99,1485 0/0:44,0:44:99:0,102,1530 0/0:44,0:44:99:0,99,1485 0/0:21,0:21:57:0,57,855 0/0:42,0:42:99:0,102,1530 0/0:43,0:43:99:0,102,1530 0/0:45,0:45:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:41,0:41:99:0,101,1431 0/0:42,0:42:99:0,105,1575 0/0:38,0:38:93:0,93,1395 0/0:47,0:47:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:49,0:49:99:0,102,1530 0/1:56,47:103:99:1318,0,1770 0/0:52,0:52:99:0,102,1530 0/0:42,0:42:99:0,114,1604 0/0:44,0:44:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:53,0:53:99:0,108,1620 0/0:45,0:45:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:17,0:17:36:0,36,540 0/0:42,0:42:99:0,99,1485 0/0:40,0:40:99:0,102,1530 0/0:50,0:50:99:0,102,1530 0/0:37,0:37:99:0,99,1485 0/0:33,0:33:84:0,84,1260 0/0:48,0:48:99:0,102,1530 0/0:50,0:50:99:0,108,1620 0/0:32,0:32:78:0,78,1170 0/0:5,0:5:15:0,15,172 0/0:39,0:39:99:0,99,1485 0/0:49,0:49:99:0,105,1575 0/0:40,0:40:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/1:33,45:78:99:1119,0,810 1 36381281 rs142929994 A G 891.88 . AC=2;AF=0.010;AN=198;BaseQRankSum=-8.640e-01;ClippingRankSum=0.290;DB;DP=2639;FS=2.167;InbreedingCoeff=-0.0117;MLEAC=2;MLEAF=0.010;MQ=58.16;MQRankSum=-5.330e-01;QD=13.94;ReadPosRankSum=0.198;SOR=0.313 GT:AD:DP:GQ:PL 0/0:26,0:26:60:0,60,900 0/0:37,0:37:90:0,90,1350 0/0:48,0:48:99:0,108,1620 0/0:32,0:32:81:0,81,1215 0/0:27,0:27:60:0,60,900 0/0:44,0:44:99:0,102,1530 0/0:22,0:22:51:0,51,765 0/0:17,0:17:36:0,36,540 0/0:34,0:34:81:0,81,1215 0/0:29,0:29:60:0,60,900 0/0:16,0:16:39:0,39,585 0/0:18,0:18:39:0,39,585 0/0:7,0:7:21:0,21,264 0/0:19,0:19:57:0,57,709 0/1:16,11:27:99:325,0,531 0/0:18,0:18:30:0,30,450 0/0:20,0:20:42:0,42,630 0/0:36,0:36:93:0,93,1395 0/0:37,0:37:90:0,90,1350 0/0:6,0:6:15:0,15,225 0/0:35,0:35:72:0,72,1080 0/0:44,0:44:81:0,81,1215 0/0:25,0:25:60:0,60,900 0/0:54,0:54:99:0,105,1575 0/0:20,0:20:36:0,36,540 0/0:27,0:27:60:0,60,900 0/0:24,0:24:60:0,60,900 0/0:20,0:20:54:0,54,810 0/0:12,0:12:24:0,24,360 0/0:20,0:20:45:0,45,675 0/0:13,0:13:27:0,27,405 0/0:16,0:16:36:0,36,540 0/0:21,0:21:51:0,51,765 0/0:12,0:12:27:0,27,405 0/0:34,0:34:72:0,72,1080 0/0:41,0:41:99:0,102,1530 0/0:29,0:29:69:0,69,1035 0/0:26,0:26:60:0,60,900 0/0:23,0:23:60:0,60,900 0/0:25,0:25:60:0,60,900 0/0:6,0:6:18:0,18,195 0/0:8,0:8:21:0,21,315 0/0:23,0:23:45:0,45,675 0/0:14,0:14:36:0,36,540 0/0:14,0:14:24:0,24,360 0/1:17,20:37:99:626,0,541 0/0:38,0:38:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:29,0:29:72:0,72,1080 0/0:19,0:19:45:0,45,675 0/0:24,0:24:57:0,57,855 0/0:10,0:10:21:0,21,315 0/0:26,0:26:57:0,57,855 0/0:38,0:38:99:0,99,1485 0/0:22,0:22:60:0,60,900 ./.:0,0:0 0/0:44,0:44:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:18,0:18:45:0,45,675 0/0:24,0:24:43:0,43,867 0/0:44,0:44:99:0,102,1530 0/0:26,0:26:51:0,51,765 0/0:24,0:24:51:0,51,765 0/0:15,0:15:39:0,39,585 0/0:20,0:20:30:0,30,450 0/0:25,0:25:60:0,60,900 0/0:24,0:24:60:0,60,900 0/0:22,0:22:42:0,42,630 0/0:20,0:20:39:0,39,585 0/0:24,0:24:60:0,60,900 0/0:28,0:28:60:0,60,900 0/0:15,0:15:36:0,36,540 0/0:23,0:23:60:0,60,900 0/0:41,0:41:99:0,102,1530 0/0:35,0:35:90:0,90,1350 0/0:39,0:39:99:0,99,1485 0/0:25,0:25:57:0,57,855 0/0:42,0:42:99:0,114,1604 0/0:41,0:41:90:0,90,1350 0/0:25,0:25:48:0,48,720 0/0:39,0:39:81:0,81,1215 0/0:28,0:28:69:0,69,1035 0/0:27,0:27:54:0,54,810 0/0:32,0:32:60:0,60,900 0/0:15,0:15:42:0,42,630 0/0:42,0:42:99:0,99,1485 0/0:40,0:40:99:0,102,1530 0/0:41,0:41:93:0,93,1395 0/0:18,0:18:42:0,42,630 0/0:16,0:16:36:0,36,540 0/0:32,0:32:71:0,71,1080 0/0:50,0:50:99:0,108,1620 0/0:27,0:27:60:0,60,900 0/0:2,0:2:6:0,6,70 0/0:23,0:23:54:0,54,810 0/0:42,0:42:99:0,99,1485 0/0:30,0:30:57:0,57,855 0/0:15,0:15:27:0,27,405 0/0:23,0:23:54:0,54,810 0/0:26,0:26:51:0,51,765 1 36383277 rs138262926 G A 1948.80 . AC=2;AF=0.010;AN=200;BaseQRankSum=2.56;ClippingRankSum=0.388;DB;DP=3927;FS=0.623;InbreedingCoeff=-0.0118;MLEAC=2;MLEAF=0.010;MQ=59.44;MQRankSum=-4.220e-01;QD=13.82;ReadPosRankSum=2.43;SOR=0.760 GT:AD:DP:GQ:PL 0/0:42,0:42:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:37,0:37:99:0,99,1485 0/1:39,28:67:99:855,0,1209 0/0:39,0:39:99:0,99,1410 0/0:43,0:43:99:0,99,1485 0/0:39,0:39:99:0,99,1452 0/0:40,0:40:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:2,0:2:6:0,6,70 0/0:38,0:38:99:0,99,1485 0/0:40,0:40:99:0,102,1530 0/0:43,0:43:99:0,102,1530 0/0:38,0:38:99:0,102,1530 0/0:35,0:35:99:0,99,1485 0/0:37,0:37:99:0,99,1485 0/0:25,0:25:45:0,45,675 0/0:39,0:39:99:0,99,1485 0/0:41,0:41:99:0,102,1530 0/0:42,0:42:99:0,99,1485 0/0:46,0:46:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:47,0:47:99:0,102,1530 0/0:39,0:39:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:44,0:44:99:0,102,1530 0/0:38,0:38:99:0,99,1485 0/0:43,0:43:99:0,102,1530 0/0:43,0:43:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:37,0:37:99:0,102,1575 0/0:37,0:37:99:0,99,1485 0/0:37,0:37:99:0,99,1485 0/0:36,0:36:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/1:37,37:74:99:1153,0,1134 0/0:42,0:42:99:0,99,1485 0/0:31,0:31:75:0,75,1125 0/0:39,0:39:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:37,0:37:99:0,99,1485 0/0:37,0:37:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:37,0:37:99:0,102,1530 0/0:45,0:45:99:0,104,1620 0/0:42,0:42:99:0,99,1485 0/0:40,0:40:99:0,99,1530 0/0:41,0:41:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:51,0:51:99:0,105,1575 0/0:6,0:6:18:0,18,188 0/0:38,0:38:99:0,99,1485 0/0:38,0:38:99:0,105,1575 0/0:34,0:34:72:0,72,1080 0/0:40,0:40:99:0,99,1471 0/0:36,0:36:99:0,99,1445 0/0:42,0:42:99:0,99,1485 0/0:36,0:36:99:0,102,1530 0/0:41,0:41:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:37,0:37:99:0,99,1485 0/0:39,0:39:99:0,99,1463 0/0:41,0:41:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:37,0:37:99:0,99,1485 0/0:37,0:37:99:0,99,1485 0/0:38,0:38:99:0,111,1519 0/0:39,0:39:99:0,102,1530 0/0:40,0:40:99:0,105,1575 0/0:39,0:39:99:0,99,1398 0/0:35,0:35:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:37,0:37:99:0,99,1485 0/0:41,0:41:99:0,102,1530 0/0:31,0:31:53:0,53,1065 0/0:39,0:39:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:40,0:40:99:0,105,1575 0/0:42,0:42:99:0,102,1530 0/0:42,0:42:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:38,0:38:99:0,99,1402 0/0:42,0:42:99:0,102,1530 0/0:3,0:3:9:0,9,101 0/0:40,0:40:99:0,99,1485 0/0:40,0:40:99:0,99,1432 0/0:44,0:44:99:0,111,1710 0/0:42,0:42:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:48,0:48:99:0,120,1800 1 36383716 rs3738356 C T 98.06 . AC=1;AF=5.155e-03;AN=194;BaseQRankSum=-9.780e-01;ClippingRankSum=-2.710e-01;DB;DP=1680;FS=0.000;InbreedingCoeff=-0.0130;MLEAC=1;MLEAF=5.155e-03;MQ=58.20;MQRankSum=-8.170e-01;QD=7.54;ReadPosRankSum=-1.092e+00;SOR=0.368 GT:AD:DP:GQ:PL 0/0:14,0:14:30:0,30,450 0/0:13,0:13:18:0,18,270 0/0:27,0:27:72:0,72,1080 0/0:18,0:18:48:0,48,720 0/0:19,0:19:36:0,36,540 0/0:25,0:25:60:0,60,900 0/0:12,0:12:30:0,30,450 0/0:6,0:6:15:0,15,225 0/0:15,0:15:45:0,45,515 0/0:6,0:6:6:0,6,90 0/0:11,0:11:24:0,24,360 0/0:7,0:7:21:0,21,271 0/0:1,0:1:3:0,3,29 0/0:14,0:14:42:0,42,528 0/0:15,0:15:36:0,36,540 0/0:15,0:15:39:0,39,585 0/0:12,0:12:30:0,30,450 0/0:22,0:22:54:0,54,810 0/0:24,0:24:63:0,63,865 0/0:3,0:3:9:0,9,98 0/0:32,0:32:81:0,81,1215 0/0:29,0:29:75:0,75,1125 0/0:14,0:14:36:0,36,540 0/0:42,0:42:99:0,102,1530 0/0:12,0:12:36:0,36,447 0/0:8,0:8:24:0,24,288 0/0:9,0:9:27:0,27,329 0/0:12,0:12:33:0,33,495 0/0:10,0:10:12:0,12,180 0/0:13,0:13:27:0,27,405 0/0:8,0:8:21:0,21,315 0/0:16,0:16:33:0,33,495 0/0:18,0:18:39:0,39,646 0/0:8,0:8:18:0,18,270 0/0:13,0:13:33:0,33,495 0/0:37,0:37:99:0,102,1530 0/0:13,0:13:39:0,39,457 0/0:16,0:16:36:0,36,540 0/0:10,0:10:27:0,27,405 0/0:14,0:14:36:0,36,540 0/0:8,0:8:18:0,18,270 0/0:4,0:4:9:0,9,135 0/0:18,0:18:51:0,51,765 0/0:10,0:10:27:0,27,405 0/0:21,0:21:51:0,51,765 0/0:25,0:25:60:0,60,900 0/0:22,0:22:51:0,51,765 0/0:35,0:35:90:0,90,1350 0/0:14,0:14:36:0,36,540 0/0:9,0:9:12:0,12,180 0/0:10,0:10:18:0,18,270 0/0:12,0:12:24:0,24,360 0/0:22,0:22:54:0,54,810 0/1:8,5:13:99:140,0,271 0/0:13,0:13:30:0,30,450 ./.:0,0:0 0/0:21,0:21:54:0,54,810 0/0:43,0:43:99:0,102,1530 0/0:12,0:12:30:0,30,450 0/0:17,0:17:48:0,48,720 0/0:21,0:21:57:0,57,855 0/0:28,0:28:75:0,75,1125 0/0:18,0:18:42:0,42,630 0/0:20,0:20:42:0,42,630 0/0:13,0:13:39:0,39,450 0/0:23,0:23:60:0,60,900 0/0:16,0:16:33:0,33,495 0/0:17,0:17:45:0,45,675 0/0:13,0:13:33:0,33,495 0/0:10,0:10:24:0,24,360 0/0:14,0:14:39:0,39,585 0/0:15,0:15:42:0,42,630 0/0:16,0:16:34:0,34,543 0/0:26,0:26:38:0,38,903 0/0:18,0:18:42:0,42,630 0/0:34,0:34:90:0,90,1350 0/0:11,0:11:30:0,30,450 0/0:38,0:38:99:0,99,1485 0/0:30,0:30:60:0,60,900 0/0:20,0:20:51:0,51,765 0/0:23,0:23:0:0,0,725 0/0:29,0:29:60:0,60,900 0/0:25,0:25:57:0,57,855 0/0:18,0:18:42:0,42,630 ./.:0,0:0 0/0:34,0:34:99:0,102,1322 0/0:34,0:34:99:0,99,1485 0/0:15,0:15:39:0,39,585 0/0:5,0:5:12:0,12,180 0/0:9,0:9:27:0,27,287 0/0:18,0:18:39:0,39,585 0/0:23,0:23:60:0,60,900 0/0:8,0:8:21:0,21,315 ./.:0,0:0 0/0:17,0:17:36:0,36,540 0/0:30,0:30:81:0,81,1215 0/0:9,0:9:21:0,21,315 0/0:7,0:7:21:0,21,228 0/0:20,0:20:42:0,42,630 0/0:13,0:13:36:0,36,540 1 36384028 rs61751004 G T 8608.38 . AC=9;AF=0.045;AN=200;BaseQRankSum=-2.327e+00;ClippingRankSum=-1.680e-01;DB;DP=4123;FS=1.780;InbreedingCoeff=0.1718;MLEAC=9;MLEAF=0.045;MQ=58.95;MQRankSum=0.903;QD=16.15;ReadPosRankSum=-4.800e-01;SOR=0.542 GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,99,1485 0/0:34,0:34:99:0,99,1215 0/0:40,0:40:99:0,102,1530 0/0:37,0:37:99:0,99,1485 0/0:34,0:34:99:0,99,1485 0/0:41,0:41:99:0,102,1530 0/0:39,0:39:99:0,99,1485 0/0:43,0:43:99:0,102,1530 0/0:40,0:40:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/1:30,28:58:99:847,0,981 0/1:19,31:50:99:1003,0,563 0/0:4,0:4:9:0,9,135 0/0:43,0:43:99:0,102,1530 0/0:42,0:42:99:0,99,1485 0/0:41,0:41:99:0,100,1404 0/0:43,0:43:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:30,0:30:63:0,63,945 0/0:43,0:43:99:0,99,1485 0/0:40,0:40:99:0,105,1575 0/0:41,0:41:99:0,99,1485 0/0:42,0:42:99:0,102,1530 0/0:44,0:44:99:0,99,1485 0/0:36,0:36:99:0,102,1530 0/0:42,0:42:99:0,100,1530 0/0:40,0:40:99:0,99,1472 0/0:39,0:39:99:0,99,1485 0/0:37,0:37:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:43,0:43:99:0,101,1530 0/0:43,0:43:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:41,0:41:99:0,105,1575 0/0:37,0:37:99:0,102,1530 0/0:42,0:42:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:44,0:44:99:0,105,1575 1/1:1,37:38:99:1331,104,0 0/0:30,0:30:81:0,81,1215 0/0:41,0:41:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:37,0:37:99:0,105,1452 0/0:40,0:40:99:0,105,1453 0/0:42,0:42:99:0,99,1485 0/0:43,0:43:99:0,102,1530 0/0:44,0:44:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/1:37,29:66:99:874,0,1128 0/0:45,0:45:99:0,102,1530 0/0:39,0:39:99:0,102,1530 0/0:2,0:2:3:0,3,45 0/0:38,0:38:99:0,99,1485 0/0:43,0:43:99:0,102,1530 0/0:41,0:41:99:0,99,1485 0/0:44,0:44:99:0,105,1575 0/0:41,0:41:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:47,0:47:99:0,102,1530 0/0:39,0:39:99:0,99,1485 0/0:38,0:38:99:0,99,1325 0/0:37,0:37:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/1:29,32:61:99:985,0,865 0/0:46,0:46:99:0,102,1530 0/0:39,0:39:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/1:39,45:84:99:1396,0,1221 0/0:38,0:38:99:0,99,1337 0/0:37,0:37:99:0,99,1344 0/0:43,0:43:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:41,0:41:99:0,102,1530 0/1:32,28:60:99:848,0,1036 0/0:42,0:42:99:0,99,1485 0/0:39,0:39:99:0,99,1435 0/0:42,0:42:99:0,108,1620 0/0:43,0:43:99:0,99,1485 0/0:21,0:21:57:0,57,855 0/0:34,0:34:99:0,102,1322 0/0:34,0:34:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:38,0:38:84:0,84,1260 0/0:37,0:37:90:0,90,1350 0/0:44,0:44:99:0,99,1485 0/0:41,0:41:99:0,102,1459 0/0:39,0:39:99:0,102,1530 0/0:7,0:7:15:0,15,225 0/0:46,0:46:99:0,99,1485 0/0:41,0:41:99:0,111,1665 0/0:39,0:39:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/1:58,58:116:99:1476,0,1460 1 36384122 . A T 2471.79 . AC=1;AF=5.000e-03;AN=200;BaseQRankSum=-1.397e+00;ClippingRankSum=-2.630e-01;DP=3938;FS=0.000;InbreedingCoeff=-0.0081;MLEAC=1;MLEAF=5.000e-03;MQ=58.67;MQRankSum=0.370;QD=12.06;ReadPosRankSum=-1.014e+00;SOR=0.432 GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,99,1485 0/0:34,0:34:99:0,99,1215 0/0:40,0:40:99:0,102,1530 0/0:44,0:44:99:0,102,1530 0/0:34,0:34:99:0,99,1485 0/0:41,0:41:99:0,102,1530 0/0:39,0:39:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:41,0:41:96:0,96,1440 0/0:44,0:44:99:0,99,1485 0/0:3,0:3:9:0,9,112 0/0:43,0:43:99:0,102,1530 0/0:36,0:36:90:0,90,1350 0/0:42,0:42:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:18,0:18:39:0,39,585 0/0:43,0:43:99:0,99,1485 0/0:40,0:40:99:0,105,1575 0/0:38,0:38:90:0,90,1350 0/0:42,0:42:99:0,102,1530 0/0:29,0:29:75:0,75,1125 0/0:36,0:36:99:0,102,1530 0/0:37,0:37:63:0,63,945 0/0:40,0:40:99:0,99,1472 0/0:34,0:34:84:0,84,1260 0/0:41,0:41:99:0,99,1485 0/0:36,0:36:76:0,76,1228 0/0:35,0:35:81:0,81,1215 0/0:28,0:28:63:0,63,945 0/0:27,0:27:60:0,60,900 0/0:41,0:41:99:0,105,1575 0/0:37,0:37:99:0,102,1530 0/0:42,0:42:99:0,99,1485 0/0:44,0:44:99:0,102,1530 0/0:38,0:38:99:0,99,1485 0/0:33,0:33:81:0,81,1215 0/0:32,0:32:81:0,81,1215 0/0:32,0:32:72:0,72,1080 0/0:36,0:36:90:0,90,1350 0/0:23,0:23:54:0,54,810 0/0:32,0:32:81:0,81,1215 0/0:42,0:42:99:0,99,1485 0/0:37,0:37:99:0,105,1452 0/0:40,0:40:99:0,105,1453 0/0:45,0:45:99:0,99,1485 0/0:24,0:24:60:0,60,900 0/0:43,0:43:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:45,0:45:99:0,102,1530 0/0:72,0:72:66:0,66,990 0/0:2,0:2:6:0,6,71 0/0:38,0:38:99:0,99,1485 0/0:43,0:43:99:0,102,1530 0/0:29,0:29:51:0,51,765 0/0:39,0:39:93:0,93,1395 0/0:41,0:41:99:0,99,1485 0/0:41,0:41:99:0,100,1464 0/0:47,0:47:99:0,102,1530 0/0:29,0:29:60:0,60,900 0/0:40,0:40:99:0,99,1485 0/0:37,0:37:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:44,0:44:99:0,102,1530 0/0:38,0:38:99:0,99,1485 0/0:39,0:39:90:0,90,1350 0/0:38,0:38:99:0,99,1485 0/0:41,0:41:90:0,90,1350 0/0:43,0:43:99:0,99,1485 0/0:38,0:38:99:0,99,1337 0/0:37,0:37:99:0,99,1344 0/0:43,0:43:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:41,0:41:99:0,102,1530 0/0:39,0:39:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:39,0:39:99:0,99,1435 0/0:42,0:42:99:0,108,1620 0/0:44,0:44:99:0,99,1485 0/0:17,0:17:45:0,45,675 0/1:118,87:205:99:2514,0,3755 0/0:34,0:34:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:32,0:32:81:0,81,1215 0/0:34,0:34:75:0,75,1125 0/0:44,0:44:99:0,99,1485 0/0:41,0:41:99:0,102,1459 0/0:30,0:30:63:0,63,945 0/0:1,0:1:3:0,3,37 0/0:53,0:53:99:0,99,1485 0/0:41,0:41:99:0,111,1665 0/0:32,0:32:81:0,81,1215 0/0:34,0:34:99:0,99,1310 0/0:41,0:41:99:0,99,1485 0/0:58,0:58:99:0,102,1530 1 36384215 rs654688 T C 2482.74 . AC=15;AF=0.081;AN=186;BaseQRankSum=0.869;ClippingRankSum=0.380;DB;DP=1038;FS=0.000;InbreedingCoeff=0.1311;MLEAC=15;MLEAF=0.081;MQ=48.65;MQRankSum=-2.219e+00;QD=15.91;ReadPosRankSum=0.00;SOR=1.051 GT:AD:DP:GQ:PL 1/1:0,6:6:18:217,18,0 0/0:13,0:13:21:0,21,315 0/1:6,9:15:99:266,0,181 0/0:10,0:10:27:0,27,405 0/0:11,0:11:30:0,30,450 0/1:6,6:12:99:161,0,194 0/0:8,0:8:18:0,18,270 0/0:13,0:13:30:0,30,450 0/0:12,0:12:24:0,24,360 0/0:6,0:6:18:0,18,207 0/0:11,0:11:27:0,27,405 0/0:7,0:7:18:0,18,270 ./.:0,0:0 0/0:10,0:10:30:0,30,374 0/0:14,0:14:30:0,30,450 0/1:6,4:10:99:100,0,179 0/0:3,0:3:9:0,9,107 0/0:10,0:10:27:0,27,405 0/0:21,0:21:45:0,45,675 0/0:3,0:3:9:0,9,96 0/0:12,0:12:33:0,33,495 0/0:13,0:13:33:0,33,495 0/0:9,0:9:21:0,21,315 0/0:20,0:20:45:0,45,675 0/0:5,0:5:12:0,12,180 0/0:14,0:14:39:0,39,585 0/0:10,0:10:30:0,30,374 0/0:3,0:3:3:0,3,45 0/0:7,0:7:18:0,18,270 0/1:2,5:7:54:127,0,54 ./.:4,0:4 0/0:13,0:13:39:0,39,459 0/0:5,0:5:9:0,9,135 0/0:8,0:8:21:0,21,315 0/0:14,0:14:36:0,36,540 0/0:27,0:27:54:0,54,810 0/0:12,0:12:24:0,24,360 0/0:3,0:3:9:0,9,104 0/1:3,6:9:82:179,0,82 0/0:5,0:5:15:0,15,179 0/0:6,0:6:15:0,15,225 0/0:6,0:6:15:0,15,225 0/0:8,0:8:21:0,21,315 0/0:4,0:4:12:0,12,142 ./.:4,0:4 0/0:17,0:17:48:0,48,720 0/0:12,0:12:27:0,27,405 0/0:21,0:21:42:0,42,630 0/0:7,0:7:0:0,0,123 0/0:8,0:8:0:0,0,167 0/0:7,0:7:18:0,18,270 0/0:4,0:4:12:0,12,149 0/0:11,0:11:18:0,18,270 1/1:0,12:12:36:419,36,0 0/0:15,0:15:42:0,42,630 ./.:0,0:0 0/0:18,0:18:39:0,39,585 0/0:13,0:13:39:0,39,478 0/0:9,0:9:24:0,24,360 0/0:12,0:12:24:0,24,360 0/0:15,0:15:36:0,36,540 0/0:5,0:5:12:0,12,180 0/1:4,5:9:99:147,0,117 0/0:2,0:2:6:0,6,72 0/0:8,0:8:24:0,24,306 0/0:7,0:7:21:0,21,252 0/0:10,0:10:24:0,24,360 0/0:7,0:7:18:0,18,270 0/0:5,0:5:15:0,15,168 0/0:4,0:4:12:0,12,154 0/1:5,5:10:99:135,0,128 0/0:7,0:7:18:0,18,270 0/0:12,0:12:33:0,33,495 0/0:16,0:16:30:0,30,450 0/0:13,0:13:24:0,24,360 0/1:11,13:24:99:396,0,338 0/0:11,0:11:30:0,30,450 0/0:39,0:39:90:0,90,1350 0/0:13,0:13:33:0,33,495 0/0:5,0:5:15:0,15,181 0/0:17,0:17:48:0,48,720 0/0:13,0:13:30:0,30,450 0/1:10,6:16:99:165,0,324 0/0:10,0:10:0:0,0,10 ./.:1,0:1 0/0:37,0:37:99:0,99,1485 0/0:17,0:17:9:0,9,548 0/1:12,8:20:99:216,0,380 0/0:2,0:2:6:0,6,82 0/0:3,0:3:9:0,9,105 0/1:1,5:6:21:155,0,21 0/0:11,0:11:30:0,30,450 0/0:7,0:7:15:0,15,225 ./.:0,0:0 0/0:8,0:8:18:0,18,270 0/0:10,0:10:27:0,27,405 0/0:14,0:14:30:0,30,450 0/0:11,0:11:27:0,27,405 0/0:21,0:21:42:0,42,630 ./.:0,0:0 1 36384476 . G A 258.82 . AC=1;AF=5.051e-03;AN=198;BaseQRankSum=-1.962e+00;ClippingRankSum=1.38;DP=2753;FS=0.000;InbreedingCoeff=-0.0072;MLEAC=1;MLEAF=5.051e-03;MQ=60.00;MQRankSum=0.381;QD=10.78;ReadPosRankSum=-2.050e-01;SOR=0.430 GT:AD:DP:GQ:PL 0/0:30,0:30:72:0,72,1080 0/0:40,0:40:99:0,102,1530 0/0:37,0:37:99:0,102,1530 0/0:28,0:28:72:0,72,1080 0/0:22,0:22:54:0,54,810 0/0:41,0:41:99:0,102,1530 0/0:24,0:24:63:0,63,945 0/0:29,0:29:75:0,75,1125 0/0:30,0:30:72:0,72,1080 0/0:39,0:39:99:0,100,1409 0/0:22,0:22:60:0,60,900 0/0:16,0:16:42:0,42,630 0/0:1,0:1:3:0,3,35 0/0:28,0:28:72:0,72,1080 0/0:24,0:24:60:0,60,900 0/0:26,0:26:75:0,75,1125 0/0:32,0:32:75:0,75,1125 0/0:30,0:30:81:0,81,1215 0/0:38,0:38:99:0,99,1485 0/0:12,0:12:30:0,30,450 0/0:34,0:34:84:0,84,1260 0/0:38,0:38:99:0,99,1485 0/0:27,0:27:72:0,72,1080 0/0:39,0:39:99:0,99,1485 0/0:23,0:23:54:0,54,810 0/0:15,0:15:39:0,39,585 0/0:21,0:21:60:0,60,900 0/0:20,0:20:45:0,45,675 0/0:27,0:27:81:0,81,964 0/0:24,0:24:71:0,71,855 0/0:22,0:22:57:0,57,855 0/0:25,0:25:72:0,72,1080 0/0:23,0:23:47:0,47,764 0/0:20,0:20:57:0,57,855 0/0:38,0:38:99:0,102,1530 0/0:38,0:38:99:0,99,1485 0/0:27,0:27:72:0,72,1080 0/0:31,0:31:72:0,72,1080 0/0:30,0:30:81:0,81,1215 0/0:22,0:22:63:0,63,945 0/0:14,0:14:42:0,42,462 0/0:13,0:13:36:0,36,540 0/0:27,0:27:72:0,72,1080 0/0:18,0:18:51:0,51,765 0/0:26,0:26:72:0,72,937 0/0:33,0:33:99:0,99,1110 0/0:39,0:39:99:0,99,1485 0/0:38,0:38:99:0,105,1575 0/0:19,0:19:34:0,34,684 0/0:21,0:21:54:0,54,810 0/0:29,0:29:81:0,81,1074 0/0:19,0:19:51:0,51,765 0/0:28,0:28:72:0,72,1080 0/1:14,10:24:99:301,0,446 0/0:43,0:43:93:0,93,1395 0/0:3,0:3:9:0,9,105 0/0:42,0:42:99:0,99,1485 0/0:40,0:40:99:0,102,1479 0/0:16,0:16:42:0,42,630 0/0:28,0:28:72:0,72,1080 0/0:40,0:40:99:0,99,1485 0/0:28,0:28:72:0,72,1080 0/0:34,0:34:91:0,91,1227 0/0:16,0:16:39:0,39,585 0/0:31,0:31:81:0,81,1215 0/0:36,0:36:96:0,96,1440 0/0:26,0:26:66:0,66,990 0/0:21,0:21:60:0,60,900 0/0:17,0:17:48:0,48,720 0/0:24,0:24:63:0,63,945 0/0:33,0:33:90:0,90,1350 0/0:21,0:21:60:0,60,900 0/0:32,0:32:81:0,81,1215 0/0:37,0:37:99:0,99,1458 0/0:37,0:37:99:0,99,1485 0/0:34,0:34:93:0,93,1395 0/0:36,0:36:81:0,81,1215 0/0:39,0:39:99:0,105,1506 0/0:35,0:35:99:0,102,1320 0/0:22,0:22:54:0,54,810 0/0:38,0:38:99:0,99,1485 0/0:29,0:29:81:0,81,1215 0/0:33,0:33:81:0,81,1215 0/0:26,0:26:72:0,72,1080 0/0:8,0:8:18:0,18,270 0/0:40,0:40:99:0,102,1530 0/0:39,0:39:99:0,105,1575 0/0:35,0:35:99:0,99,1485 0/0:20,0:20:51:0,51,765 0/0:8,0:8:21:0,21,315 0/0:26,0:26:60:0,60,900 0/0:36,0:36:99:0,102,1527 0/0:20,0:20:54:0,54,810 ./.:0,0:0 0/0:42,0:42:99:0,105,1575 0/0:38,0:38:99:0,99,1485 0/0:21,0:21:60:0,60,900 0/0:20,0:20:51:0,51,738 0/0:39,0:39:99:0,105,1575 0/0:23,0:23:60:0,60,900 1 36385061 rs4142288 G A 1346.75 . AC=2;AF=0.010;AN=200;BaseQRankSum=-1.423e+00;ClippingRankSum=9.000e-03;DB;DP=4022;FS=5.676;InbreedingCoeff=-0.0101;MLEAC=2;MLEAF=0.010;MQ=58.85;MQRankSum=0.650;QD=15.30;ReadPosRankSum=1.82;SOR=1.334 GT:AD:DP:GQ:PL 0/0:42,0:42:99:0,102,1530 0/0:40,0:40:99:0,102,1530 0/0:37,0:37:99:0,102,1530 0/0:46,0:46:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:37,0:37:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:44,0:44:99:0,102,1526 0/0:43,0:43:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:17,0:17:51:0,51,620 0/0:42,0:42:99:0,102,1530 0/0:37,0:37:99:0,99,1485 0/0:42,0:42:99:0,99,1455 0/0:41,0:41:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:39,0:39:99:0,102,1530 0/0:40,0:40:99:0,100,1439 0/0:44,0:44:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:40,0:40:99:0,103,1575 0/0:39,0:39:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:34,0:34:99:0,100,1191 0/0:41,0:41:99:0,102,1530 0/0:43,0:43:99:0,99,1485 0/0:33,0:33:90:0,90,1350 0/0:43,0:43:99:0,99,1485 0/0:44,0:44:90:0,90,1350 0/0:40,0:40:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:45,0:45:99:0,102,1530 0/0:38,0:38:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:34,0:34:69:0,69,1035 0/0:34,0:34:90:0,90,1350 0/0:41,0:41:99:0,99,1485 0/0:32,0:32:72:0,72,1080 0/0:36,0:36:99:0,99,1485 0/0:33,0:33:99:0,99,1110 0/0:47,0:47:99:0,99,1485 0/0:38,0:38:99:0,105,1575 0/0:39,0:39:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:47,0:47:99:0,99,1485 0/1:26,25:51:99:796,0,799 0/0:49,0:49:99:0,102,1530 0/0:21,0:21:54:0,54,810 0/0:42,0:42:99:0,99,1485 0/0:40,0:40:99:0,102,1479 0/0:37,0:37:90:0,90,1350 0/0:45,0:45:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:48,0:48:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:37,0:37:99:0,99,1485 0/0:39,0:39:99:0,108,1620 0/0:60,0:60:99:0,120,1800 0/0:37,0:37:99:0,99,1458 0/0:41,0:41:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:46,0:46:99:0,111,1665 0/0:39,0:39:99:0,105,1506 0/0:35,0:35:99:0,102,1320 0/0:41,0:41:99:0,102,1530 0/0:48,0:48:99:0,114,1710 0/0:35,0:35:99:0,99,1355 0/0:44,0:44:99:0,99,1485 0/0:46,0:46:99:0,102,1530 0/0:21,0:21:51:0,51,765 0/0:40,0:40:99:0,102,1530 0/0:39,0:39:99:0,105,1575 0/0:79,0:79:33:0,33,2482 0/1:16,21:37:99:610,0,492 0/0:27,0:27:72:0,72,1080 0/0:50,0:50:99:0,111,1665 0/0:36,0:36:99:0,102,1527 0/0:35,0:35:81:0,81,1215 0/0:11,0:11:24:0,24,360 0/0:42,0:42:99:0,105,1575 0/0:38,0:38:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:39,0:39:90:0,90,1350 0/0:51,0:51:99:0,108,1620 0/0:41,0:41:99:0,105,1575 1 36385824 rs2057606 C G 13217.30 . AC=7;AF=0.035;AN=200;BaseQRankSum=-3.050e-01;ClippingRankSum=0.944;DB;DP=4812;FS=1.810;InbreedingCoeff=0.2475;MLEAC=7;MLEAF=0.035;MQ=58.74;MQRankSum=-1.370e-01;QD=15.94;ReadPosRankSum=1.14;SOR=0.863 GT:AD:DP:GQ:PL 0/0:42,0:42:99:0,102,1530 0/0:40,0:40:99:0,102,1530 0/0:37,0:37:99:0,102,1530 0/0:46,0:46:99:0,99,1485 0/0:44,0:44:99:0,102,1530 0/0:44,0:44:99:0,99,1485 0/0:46,0:46:99:0,102,1530 0/0:40,0:40:99:0,99,1391 0/0:41,0:41:99:0,99,1354 0/0:52,0:52:99:0,104,1796 0/0:43,0:43:99:0,99,1485 0/0:41,0:41:99:0,102,1530 0/0:4,0:4:12:0,12,140 0/0:50,0:50:99:0,99,1485 0/0:41,0:41:99:0,102,1530 0/0:44,0:44:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:113,0:113:63:0,63,3512 0/0:39,0:39:99:0,102,1530 0/0:50,0:50:99:0,102,1530 0/0:44,0:44:99:0,102,1530 0/0:38,0:38:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:34,0:34:99:0,100,1191 0/0:41,0:41:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:46,0:46:99:0,102,1530 0/0:44,0:44:99:0,102,1530 0/0:41,0:41:99:0,102,1530 0/0:43,0:43:99:0,102,1530 0/0:46,0:46:99:0,114,1710 0/0:38,0:38:99:0,99,1485 0/0:46,0:46:99:0,102,1530 0/0:38,0:38:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:46,0:46:99:0,105,1575 0/0:41,0:41:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:36,0:36:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/1:65,58:123:99:1517,0,1993 0/0:40,0:40:99:0,99,1485 0/0:38,0:38:99:0,105,1575 0/1:45,39:84:99:1163,0,1403 0/0:42,0:42:99:0,99,1485 0/0:44,0:44:99:0,100,1569 1/1:1,87:88:99:3179,254,0 0/0:43,0:43:99:0,99,1364 0/0:44,0:44:99:0,99,1485 0/0:50,0:50:99:0,108,1620 0/0:9,0:9:18:0,18,270 0/0:42,0:42:99:0,99,1485 0/0:40,0:40:99:0,102,1479 0/0:46,0:46:99:0,99,1485 0/0:46,0:46:99:0,105,1575 0/0:40,0:40:99:0,99,1485 0/0:46,0:46:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:43,0:43:99:0,102,1530 0/0:42,0:42:99:0,99,1443 0/0:40,0:40:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:41,0:41:99:0,102,1377 0/0:42,0:42:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/1:34,41:75:99:1196,0,1052 0/0:47,0:47:99:0,102,1530 0/0:60,0:60:99:0,99,1485 0/0:46,0:46:99:0,102,1530 0/0:39,0:39:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/1:166,179:345:99:4892,0,5103 0/0:35,0:35:99:0,102,1320 0/0:43,0:43:99:0,99,1485 0/1:65,49:114:99:1401,0,2017 0/0:50,0:50:99:0,105,1575 0/0:50,0:50:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:30,0:30:66:0,66,990 0/0:40,0:40:99:0,102,1530 0/0:39,0:39:99:0,105,1575 0/0:43,0:43:99:0,99,1327 0/0:44,0:44:99:0,102,1530 0/0:42,0:42:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:36,0:36:99:0,102,1527 0/0:42,0:42:99:0,99,1485 0/0:2,0:2:6:0,6,64 0/0:39,0:39:99:0,99,1279 0/0:38,0:38:99:0,99,1485 0/0:40,0:40:99:0,99,1468 0/0:43,0:43:99:0,102,1530 0/0:43,0:43:99:0,99,1485 0/0:48,0:48:99:0,105,1575 1 36386884 . C CTTTTT 199.56 . AC=2;AF=0.010;AN=198;DP=2580;FS=0.000;InbreedingCoeff=-0.0083;MLEAC=2;MLEAF=0.010;MQ=56.55;QD=29.67;SOR=2.833 GT:AD:DP:GQ:PL 0/0:25,0:25:7:0,7,751 0/0:34,0:34:31:0,31,1009 0/0:40,0:40:0:0,0,1071 0/0:36,0:36:38:0,38,1150 0/0:34,0:34:8:0,8,1029 0/0:42,0:42:0:0,0,1020 0/0:17,0:17:24:0,24,360 0/0:14,0:14:9:0,9,135 0/0:26,0:26:33:0,33,495 0/0:14,0:14:0:0,0,282 0/0:23,0:23:0:0,0,577 0/0:11,0:11:0:0,0,135 ./.:0,0:0 0/0:20,0:20:24:0,24,360 0/0:20,0:20:0:0,0,516 0/0:18,0:18:21:0,21,315 0/0:23,0:23:36:0,36,540 0/0:34,0:34:48:0,48,720 0/0:20,0:20:27:0,27,405 0/0:13,0:13:2:0,2,378 0/0:27,0:27:0:0,0,680 0/0:30,0:30:44:0,44,938 1/1:0,3:3:23:257,23,0 0/0:50,0:50:0:0,0,1405 0/0:15,0:15:4:0,4,484 0/0:46,0:46:54:0,54,810 0/0:20,0:20:0:0,0,579 0/0:16,0:16:21:0,21,315 0/0:17,0:17:9:0,9,450 0/0:19,0:19:33:0,33,495 0/0:14,0:14:12:0,12,180 0/0:28,0:28:39:0,39,585 0/0:25,0:25:0:0,0,622 0/0:26,0:26:0:0,0,551 0/0:35,0:35:10:0,10,1080 0/0:48,0:48:0:0,0,1149 0/0:31,0:31:0:0,0,865 0/0:30,0:30:39:0,39,585 0/0:25,0:25:0:0,0,694 0/0:16,0:16:12:0,12,180 0/0:18,0:18:20:0,20,548 0/0:13,0:13:18:0,18,270 0/0:25,0:25:11:0,11,787 0/0:21,0:21:0:0,0,577 0/0:12,0:12:2:0,2,328 0/0:37,0:37:37:0,37,1169 0/0:28,0:28:0:0,0,822 0/0:54,0:54:48:0,48,720 0/0:26,0:26:24:0,24,360 0/0:18,0:18:27:0,27,405 0/0:18,0:18:27:0,27,405 0/0:20,0:20:18:0,18,270 0/0:26,0:26:0:0,0,725 0/0:20,0:20:24:0,24,360 0/0:21,0:21:0:0,0,432 0/0:5,0:5:0:0,0,89 0/0:31,0:31:36:0,36,540 0/0:57,0:57:75:0,75,1125 0/0:12,0:12:12:0,12,180 0/0:26,0:26:0:0,0,625 0/0:44,0:44:10:0,10,1242 0/0:35,0:35:42:0,42,630 0/0:32,0:32:18:0,18,270 0/0:12,0:12:18:0,18,270 0/0:16,0:16:0:0,0,366 0/0:27,0:27:0:0,0,723 0/0:22,0:22:30:0,30,730 0/0:17,0:17:24:0,24,360 0/0:24,0:24:0:0,0,572 0/0:17,0:17:5:0,5,450 0/0:33,0:33:54:0,54,810 0/0:22,0:22:24:0,24,360 0/0:29,0:29:0:0,0,841 0/0:44,0:44:48:0,48,720 0/0:34,0:34:33:0,33,1022 0/0:40,0:40:53:0,53,1213 0/0:31,0:31:26:0,26,928 0/0:84,0:84:99:0,104,1800 0/0:46,0:46:31:0,31,1369 0/0:21,0:21:1:0,1,600 0/0:27,0:27:42:0,42,630 0/0:28,0:28:14:0,14,822 0/0:17,0:17:12:0,12,180 0/0:29,0:29:39:0,39,585 0/0:3,0:3:9:0,9,100 0/0:40,0:40:99:0,102,1530 0/0:29,0:29:0:0,0,781 0/0:30,0:30:42:0,42,630 0/0:12,0:12:9:0,9,135 0/0:15,0:15:9:0,9,135 0/0:23,0:23:0:0,0,725 0/0:46,0:46:22:0,22,1316 0/0:10,0:10:0:0,0,177 0/0:2,0:2:3:0,3,45 0/0:33,0:33:0:0,0,795 0/0:32,0:32:0:0,0,758 0/0:17,0:17:0:0,0,448 0/0:24,0:24:30:0,30,450 0/0:21,0:21:33:0,33,495 0/0:21,0:21:27:0,27,623 1 36386905 rs78160010 G T 145.85 . AC=1;AF=5.051e-03;AN=198;BaseQRankSum=-3.166e+00;ClippingRankSum=0.465;DB;DP=2331;FS=23.447;InbreedingCoeff=-0.2408;MLEAC=3;MLEAF=0.015;MQ=44.17;MQRankSum=-1.793e+00;QD=5.03;ReadPosRankSum=-2.723e+00;SOR=1.186 GT:AD:DP:GQ:PGT:PID:PL 0/0:30,0:30:23:.:.:0,23,980 0/0:35,0:35:0:.:.:0,0,1017 0/0:36,0:36:35:.:.:0,35,1165 0/0:39,0:39:0:.:.:0,0,807 0/0:25,0:25:0:.:.:0,0,578 0/0:31,0:31:20:.:.:0,20,975 0/0:20,0:20:42:.:.:0,42,630 0/0:11,0:11:21:.:.:0,21,373 0/0:23,0:23:0:.:.:0,0,606 0/0:21,0:21:0:.:.:0,0,255 0/0:23,0:23:2:.:.:0,2,734 0/0:15,0:15:9:.:.:0,9,498 0/0:1,0:1:3:.:.:0,3,30 0/0:15,0:15:20:.:.:0,20,488 0/0:22,0:22:31:.:.:0,31,698 0/0:6,0:6:0:.:.:0,0,149 0/0:21,0:21:4:.:.:0,4,679 0/0:16,0:16:0:.:.:0,0,449 0/0:37,0:37:0:.:.:0,0,1112 0/0:11,0:11:0:.:.:0,0,58 0/0:23,0:23:34:.:.:0,34,816 0/0:37,0:37:0:.:.:0,0,855 0/0:17,0:17:0:.:.:0,0,340 0/0:41,0:41:72:.:.:0,72,1080 0/0:12,0:12:2:.:.:0,2,396 0/0:27,0:27:0:.:.:0,0,553 0/0:18,0:18:0:.:.:0,0,545 0/0:24,0:24:0:.:.:0,0,554 0/0:11,0:11:30:.:.:0,30,450 0/0:15,0:15:0:.:.:0,0,304 0/0:17,0:17:0:.:.:0,0,372 0/0:24,0:24:0:.:.:0,0,635 0/0:14,0:14:8:.:.:0,8,419 0/0:16,0:16:0:.:.:0,0,343 0/0:23,0:23:0:.:.:0,0,328 0/0:47,0:47:0:.:.:0,0,1319 0/0:37,0:37:0:.:.:0,0,845 0/0:30,0:30:26:.:.:0,26,1023 0/0:16,0:16:0:.:.:0,0,377 0/0:19,0:19:0:.:.:0,0,363 0/0:12,0:12:0:.:.:0,0,77 0/0:8,0:8:0:.:.:0,0,155 0/0:21,0:21:0:.:.:0,0,442 0/0:11,0:11:0:.:.:0,0,280 0/0:15,0:15:0:.:.:0,0,410 0/0:36,0:36:0:.:.:0,0,907 0/0:18,0:18:0:.:.:0,0,431 0/0:39,0:39:0:.:.:0,0,1001 0/0:28,0:28:50:.:.:0,50,965 0/0:20,0:20:0:.:.:0,0,439 0/0:16,0:16:0:.:.:0,0,387 0/0:11,0:11:0:.:.:0,0,186 0/0:21,0:21:0:.:.:0,0,483 0/0:24,0:24:0:.:.:0,0,562 0/0:30,0:30:27:.:.:0,27,1005 0/0:1,0:1:3:.:.:0,3,27 0/0:40,0:40:0:.:.:0,0,1107 0/0:57,0:57:4:.:.:0,4,1658 0/0:16,0:16:0:.:.:0,0,306 0/0:20,0:20:0:.:.:0,0,345 0/0:28,0:28:0:.:.:0,0,595 0/0:23,0:23:0:.:.:0,0,662 0/1:17,12:29:99:0|1:36386905_G_T:177,0,941 0/0:11,0:11:0:.:.:0,0,188 0/0:15,0:15:33:.:.:0,33,495 0/0:19,0:19:0:.:.:0,0,512 0/0:18,0:18:0:.:.:0,0,207 0/0:17,0:17:0:.:.:0,0,480 0/0:24,0:24:0:.:.:0,0,299 0/0:17,0:17:16:.:.:0,16,542 0/0:22,0:22:0:.:.:0,0,627 0/0:14,0:14:0:.:.:0,0,195 0/0:30,0:30:0:.:.:0,0,823 0/0:33,0:33:0:.:.:0,0,855 0/0:29,0:29:0:.:.:0,0,753 0/0:42,0:42:0:.:.:0,0,1255 0/0:32,0:32:60:.:.:0,60,900 0/0:78,0:78:0:.:.:0,0,2041 0/0:28,0:28:0:.:.:0,0,744 0/0:19,0:19:0:.:.:0,0,576 0/0:29,0:29:0:.:.:0,0,714 0/0:23,0:23:0:.:.:0,0,669 0/0:19,0:19:6:.:.:0,6,568 0/0:15,0:15:0:.:.:0,0,145 0/0:5,0:5:12:.:.:0,12,180 0/0:74,0:74:0:.:.:0,0,1437 0/0:36,0:36:0:.:.:0,0,883 0/0:24,0:24:3:.:.:0,3,704 0/0:9,0:9:0:.:.:0,0,268 0/0:10,0:10:0:.:.:0,0,234 0/0:19,0:19:18:.:.:0,18,655 0/0:32,0:32:0:.:.:0,0,700 0/0:16,0:16:0:.:.:0,0,422 ./.:1,0:1 0/0:21,0:21:0:.:.:0,0,518 0/0:34,0:34:40:.:.:0,40,1066 0/0:19,0:19:0:.:.:0,0,357 0/0:20,0:20:0:.:.:0,0,596 0/0:34,0:34:0:.:.:0,0,989 0/0:11,0:11:0:.:.:0,0,179 1 36386907 rs80323450 C T 138.88 . AC=1;AF=5.051e-03;AN=198;BaseQRankSum=-3.196e+00;ClippingRankSum=0.402;DB;DP=2151;FS=20.648;InbreedingCoeff=-0.1169;MLEAC=1;MLEAF=5.051e-03;MQ=45.70;MQRankSum=-2.223e+00;QD=4.63;ReadPosRankSum=-3.281e+00;SOR=1.195 GT:AD:DP:GQ:PGT:PID:PL 0/0:28,0:28:54:.:.:0,54,810 0/0:31,0:31:33:.:.:0,33,1027 0/0:45,0:45:98:.:.:0,98,1557 0/0:36,0:36:0:.:.:0,0,763 0/0:23,0:23:0:.:.:0,0,666 0/0:30,0:30:57:.:.:0,57,1045 0/0:20,0:20:42:.:.:0,42,630 0/0:12,0:12:30:.:.:0,30,450 0/0:26,0:26:0:.:.:0,0,776 0/0:15,0:15:0:.:.:0,0,445 0/0:19,0:19:42:.:.:0,42,630 0/0:15,0:15:33:.:.:0,33,495 0/0:1,0:1:3:.:.:0,3,30 0/0:14,0:14:15:.:.:0,15,436 0/0:20,0:20:45:.:.:0,45,675 0/0:6,0:6:0:.:.:0,0,149 0/0:22,0:22:36:.:.:0,36,769 0/0:18,0:18:45:.:.:0,45,675 0/0:38,0:38:45:.:.:0,45,1263 0/0:6,0:6:0:.:.:0,0,87 0/0:23,0:23:54:.:.:0,54,810 0/0:39,0:39:50:.:.:0,50,1199 0/0:17,0:17:0:.:.:0,0,340 0/0:44,0:44:87:.:.:0,87,1305 0/0:12,0:12:12:.:.:0,12,389 0/0:30,0:30:28:.:.:0,28,927 0/0:17,0:17:16:.:.:0,16,590 0/0:20,0:20:0:.:.:0,0,556 0/0:11,0:11:33:.:.:0,33,379 0/0:12,0:12:30:.:.:0,30,450 0/0:16,0:16:0:.:.:0,0,412 0/0:21,0:21:0:.:.:0,0,646 0/0:7,0:7:15:.:.:0,15,225 0/0:12,0:12:4:.:.:0,4,341 0/0:17,0:17:0:.:.:0,0,435 0/0:44,0:44:64:.:.:0,64,1496 0/0:33,0:33:0:.:.:0,0,987 0/0:27,0:27:45:.:.:0,45,675 0/0:14,0:14:20:.:.:0,20,460 0/0:16,0:16:0:.:.:0,0,471 0/0:12,0:12:0:.:.:0,0,77 0/0:8,0:8:0:.:.:0,0,155 0/0:17,0:17:17:.:.:0,17,550 0/0:11,0:11:0:.:.:0,0,280 0/0:16,0:16:11:.:.:0,11,509 0/0:34,0:34:0:.:.:0,0,860 0/0:16,0:16:0:.:.:0,0,492 0/0:36,0:36:11:.:.:0,11,1113 0/0:23,0:23:60:.:.:0,60,900 0/0:17,0:17:0:.:.:0,0,420 0/0:17,0:17:0:.:.:0,0,463 0/0:9,0:9:0:.:.:0,0,250 0/0:21,0:21:0:.:.:0,0,483 0/0:22,0:22:0:.:.:0,0,703 0/0:31,0:31:65:.:.:0,65,1084 ./.:0,0:0 0/0:36,0:36:26:.:.:0,26,1159 0/0:53,0:53:99:.:.:0,99,1698 0/0:14,0:14:9:.:.:0,9,434 0/0:15,0:15:13:.:.:0,13,517 0/0:26,0:26:31:.:.:0,31,821 0/0:21,0:21:28:.:.:0,28,731 0/1:18,12:30:99:0|1:36386905_G_T:177,0,941 0/0:8,0:8:12:.:.:0,12,180 0/0:15,0:15:36:.:.:0,36,540 0/0:16,0:16:0:.:.:0,0,495 0/0:18,0:18:0:.:.:0,0,207 0/0:14,0:14:18:.:.:0,18,446 0/0:23,0:23:0:.:.:0,0,486 0/0:15,0:15:18:.:.:0,18,507 0/0:19,0:19:23:.:.:0,23,635 0/0:14,0:14:0:.:.:0,0,280 0/0:25,0:25:57:.:.:0,57,855 0/0:29,0:29:60:.:.:0,60,900 0/0:27,0:27:46:.:.:0,46,880 0/0:44,0:44:77:.:.:0,77,1489 0/0:32,0:32:60:.:.:0,60,900 0/0:61,0:61:99:.:.:0,114,1800 0/0:28,0:28:0:.:.:0,0,744 0/0:14,0:14:30:.:.:0,30,450 0/0:25,0:25:0:.:.:0,0,749 0/0:21,0:21:6:.:.:0,6,625 0/0:20,0:20:4:.:.:0,4,595 0/0:13,0:13:0:.:.:0,0,327 0/0:5,0:5:12:.:.:0,12,180 0/0:63,0:63:0:.:.:0,0,1859 0/0:28,0:28:12:.:.:0,12,862 0/0:23,0:23:54:.:.:0,54,810 0/0:8,0:8:15:.:.:0,15,225 0/0:9,0:9:0:.:.:0,0,272 0/0:19,0:19:20:.:.:0,20,655 0/0:29,0:29:22:.:.:0,22,899 0/0:13,0:13:27:.:.:0,27,405 0/0:1,0:1:3:.:.:0,3,36 0/0:18,0:18:0:.:.:0,0,564 0/0:31,0:31:60:.:.:0,60,900 0/0:15,0:15:0:.:.:0,0,417 0/0:20,0:20:23:.:.:0,23,659 0/0:33,0:33:14:.:.:0,14,992 0/0:11,0:11:0:.:.:0,0,192 1 36386976 rs141020163 C A 419.88 . AC=1;AF=5.102e-03;AN=196;BaseQRankSum=-2.466e+00;ClippingRankSum=0.982;DB;DP=1936;FS=0.000;InbreedingCoeff=-0.0081;MLEAC=1;MLEAF=5.102e-03;MQ=59.20;MQRankSum=1.24;QD=14.48;ReadPosRankSum=-4.580e-01;SOR=0.770 GT:AD:DP:GQ:PL 0/0:17,0:17:48:0,48,720 0/0:30,0:30:81:0,81,1215 0/0:33,0:33:72:0,72,1080 0/0:20,0:20:57:0,57,855 0/0:21,0:21:60:0,60,900 0/0:36,0:36:90:0,90,1350 0/0:13,0:13:30:0,30,450 0/0:14,0:14:36:0,36,540 0/0:20,0:20:42:0,42,630 0/0:25,0:25:63:0,63,945 0/0:15,0:15:33:0,33,495 0/0:15,0:15:33:0,33,495 0/0:1,0:1:3:0,3,36 0/0:18,0:18:48:0,48,720 0/0:17,0:17:51:0,51,644 0/0:19,0:19:51:0,51,765 0/0:20,0:20:42:0,42,630 0/0:18,0:18:48:0,48,720 0/0:35,0:35:90:0,90,1350 0/0:6,0:6:15:0,15,225 0/0:16,0:16:42:0,42,630 0/0:22,0:22:51:0,51,765 0/0:17,0:17:39:0,39,585 0/0:40,0:40:99:0,99,1485 0/0:8,0:8:18:0,18,270 0/0:38,0:38:99:0,99,1485 0/0:14,0:14:24:0,24,360 0/0:13,0:13:30:0,30,450 0/0:6,0:6:15:0,15,225 0/0:15,0:15:39:0,39,585 0/0:12,0:12:33:0,33,495 0/0:15,0:15:30:0,30,450 0/0:9,0:9:24:0,24,360 0/0:13,0:13:13:0,13,400 0/0:17,0:17:51:0,51,632 0/0:40,0:40:99:0,102,1530 0/0:14,0:14:27:0,27,405 0/0:24,0:24:36:0,36,834 0/0:11,0:11:27:0,27,405 0/0:19,0:19:42:0,42,630 0/0:9,0:9:27:0,27,308 0/0:6,0:6:15:0,15,225 0/0:11,0:11:27:0,27,405 0/0:13,0:13:36:0,36,540 0/0:14,0:14:36:0,36,540 0/0:25,0:25:60:0,60,900 0/0:23,0:23:60:0,60,900 0/0:38,0:38:84:0,84,1260 0/0:19,0:19:51:0,51,765 0/0:13,0:13:30:0,30,450 0/0:6,0:6:15:0,15,225 0/0:13,0:13:30:0,30,450 0/0:16,0:16:39:0,39,585 0/0:20,0:20:39:0,39,585 0/0:18,0:18:42:0,42,630 ./.:0,0:0 0/0:38,0:38:96:0,96,1440 0/0:41,0:41:99:0,99,1485 0/0:17,0:17:45:0,45,675 0/0:22,0:22:57:0,57,855 0/0:18,0:18:31:0,31,629 0/0:30,0:30:75:0,75,1125 0/0:13,0:13:33:0,33,495 0/0:17,0:17:48:0,48,720 0/0:17,0:17:36:0,36,540 0/0:20,0:20:54:0,54,810 0/0:22,0:22:57:0,57,855 0/0:18,0:18:48:0,48,720 0/0:13,0:13:36:0,36,540 0/0:12,0:12:18:0,18,270 0/0:18,0:18:48:0,48,720 0/0:16,0:16:42:0,42,630 0/0:18,0:18:39:0,39,585 0/0:28,0:28:72:0,72,1080 0/0:23,0:23:60:0,60,855 0/0:33,0:33:75:0,75,1125 0/0:22,0:22:30:0,30,450 0/0:61,0:61:99:0,114,1800 0/0:24,0:24:51:0,51,765 0/0:7,0:7:18:0,18,270 0/0:27,0:27:60:0,60,900 0/0:25,0:25:60:0,60,900 0/0:14,0:14:39:0,39,585 0/0:16,0:16:39:0,39,585 0/0:6,0:6:18:0,18,216 0/0:48,0:48:99:0,99,1485 0/0:20,0:20:60:0,60,706 0/0:9,0:9:24:0,24,360 0/0:12,0:12:23:0,23,378 0/0:10,0:10:24:0,24,360 0/0:25,0:25:60:0,60,900 0/0:39,0:39:85:0,85,1371 0/0:16,0:16:20:0,20,488 ./.:0,0:0 0/1:14,15:29:99:462,0,412 0/0:24,0:24:54:0,54,810 0/0:12,0:12:33:0,33,495 0/0:16,0:16:42:0,42,630 0/0:17,0:17:33:0,33,495 0/0:23,0:23:45:0,45,675 1 36387771 . A G 553.82 . AC=1;AF=5.000e-03;AN=200;BaseQRankSum=-2.515e+00;ClippingRankSum=1.43;DP=4098;FS=0.000;InbreedingCoeff=-0.0074;MLEAC=1;MLEAF=5.000e-03;MQ=59.61;MQRankSum=2.04;QD=11.54;ReadPosRankSum=-2.290e-01;SOR=0.839 GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:43,0:43:99:0,101,1496 0/0:41,0:41:99:0,108,1620 0/0:45,0:45:99:0,99,1485 0/0:47,0:47:99:0,103,1620 0/0:46,0:46:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:46,0:46:99:0,102,1530 0/0:3,0:3:9:0,9,113 0/0:42,0:42:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:40,0:40:99:0,101,1522 0/0:42,0:42:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:36,0:36:81:0,81,1215 0/0:40,0:40:99:0,99,1485 0/0:43,0:43:99:0,108,1620 0/0:41,0:41:99:0,102,1530 0/0:48,0:48:99:0,116,1638 0/1:27,21:48:99:596,0,852 0/0:47,0:47:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:41,0:41:99:0,105,1575 0/0:43,0:43:99:0,102,1530 0/0:40,0:40:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:37,0:37:99:0,102,1530 0/0:40,0:40:99:0,102,1530 0/0:41,0:41:99:0,99,1485 0/0:48,0:48:99:0,114,1710 0/0:47,0:47:99:0,105,1575 0/0:44,0:44:99:0,99,1485 0/0:41,0:41:99:0,102,1530 0/0:35,0:35:81:0,81,1215 0/0:40,0:40:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:46,0:46:99:0,105,1575 0/0:39,0:39:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:40,0:40:99:0,102,1530 0/0:44,0:44:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:47,0:47:99:0,102,1530 0/0:45,0:45:99:0,100,1572 0/0:44,0:44:99:0,102,1530 0/0:41,0:41:99:0,102,1530 0/0:50,0:50:99:0,105,1575 0/0:1,0:1:3:0,3,29 0/0:42,0:42:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:41,0:41:99:0,99,1423 0/0:46,0:46:99:0,102,1530 0/0:38,0:38:99:0,99,1485 0/0:39,0:39:99:0,102,1530 0/0:41,0:41:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:41,0:41:99:0,102,1530 0/0:40,0:40:99:0,99,1329 0/0:36,0:36:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:46,0:46:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:45,0:45:99:0,102,1530 0/0:38,0:38:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:39,0:39:99:0,102,1530 0/0:41,0:41:99:0,99,1485 0/0:61,0:61:99:0,114,1800 0/0:42,0:42:99:0,103,1358 0/0:44,0:44:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:42,0:42:99:0,105,1575 0/0:40,0:40:99:0,99,1485 0/0:18,0:18:36:0,36,540 0/0:48,0:48:99:0,99,1485 0/0:49,0:49:99:0,111,1665 0/0:44,0:44:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:41,0:41:99:0,108,1620 0/0:43,0:43:99:0,99,1485 0/0:1,0:1:3:0,3,31 0/0:40,0:40:99:0,99,1485 0/0:43,0:43:99:0,99,1343 0/0:40,0:40:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:39,0:39:99:0,102,1470 0/0:49,0:49:99:0,99,1485 1 36388080 rs41308339 A G 3161.79 . AC=3;AF=0.015;AN=198;BaseQRankSum=0.405;ClippingRankSum=0.142;DB;DP=3934;FS=3.624;InbreedingCoeff=-0.0170;MLEAC=3;MLEAF=0.015;MQ=59.56;MQRankSum=0.182;QD=16.38;ReadPosRankSum=-1.620e-01;SOR=1.047 GT:AD:DP:GQ:PL 0/0:37,0:37:90:0,90,1350 0/0:39,0:39:99:0,99,1485 0/0:43,0:43:99:0,101,1496 0/0:41,0:41:99:0,108,1620 0/0:45,0:45:99:0,99,1485 0/1:33,45:78:99:1420,0,982 0/0:40,0:40:99:0,99,1485 0/0:47,0:47:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:37,0:37:81:0,81,1215 0/0:32,0:32:84:0,84,1130 0/0:1,0:1:3:0,3,36 0/0:36,0:36:90:0,90,1350 0/0:44,0:44:99:0,102,1530 0/0:40,0:40:99:0,101,1522 0/0:42,0:42:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:42,0:42:99:0,99,1440 0/1:42,31:73:99:935,0,1278 0/0:43,0:43:99:0,108,1620 0/0:24,0:24:60:0,60,900 0/0:48,0:48:99:0,116,1638 0/0:44,0:44:99:0,99,1485 0/0:47,0:47:99:0,99,1485 0/0:28,0:28:63:0,63,945 0/0:39,0:39:87:0,87,1305 0/0:41,0:41:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:25,0:25:60:0,60,900 0/0:42,0:42:90:0,90,1350 0/0:40,0:40:93:0,93,1395 0/0:33,0:33:99:0,99,1252 0/0:37,0:37:99:0,102,1530 0/0:40,0:40:99:0,102,1530 0/0:41,0:41:99:0,105,1575 0/0:41,0:41:99:0,99,1485 0/0:34,0:34:81:0,81,1215 0/0:42,0:42:99:0,99,1485 0/0:39,0:39:90:0,90,1350 0/0:31,0:31:84:0,84,1260 0/0:39,0:39:99:0,105,1575 0/0:38,0:38:81:0,81,1215 0/0:32,0:32:60:0,60,900 0/0:39,0:39:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:40,0:40:99:0,102,1530 0/0:44,0:44:99:0,99,1485 0/0:24,0:24:63:0,63,945 0/0:49,0:49:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:42,0:42:99:0,102,1530 0/0:50,0:50:99:0,116,1789 0/0:12,0:12:30:0,30,450 0/0:42,0:42:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:30,0:30:75:0,75,1125 0/0:39,0:39:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:39,0:39:99:0,102,1530 0/0:44,0:44:99:0,102,1530 0/1:15,27:42:99:881,0,447 0/0:42,0:42:99:0,99,1485 0/0:41,0:41:99:0,102,1530 0/0:36,0:36:93:0,93,1395 0/0:40,0:40:99:0,105,1575 0/0:45,0:45:99:0,99,1485 0/0:36,0:36:99:0,102,1530 0/0:43,0:43:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:45,0:45:99:0,102,1530 0/0:38,0:38:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:39,0:39:99:0,102,1530 0/0:41,0:41:99:0,99,1485 0/0:61,0:61:99:0,114,1800 0/0:42,0:42:99:0,103,1358 0/0:37,0:37:90:0,90,1350 0/0:40,0:40:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:42,0:42:99:0,105,1575 0/0:40,0:40:99:0,99,1485 0/0:10,0:10:27:0,27,405 0/0:48,0:48:99:0,99,1485 0/0:49,0:49:99:0,111,1665 0/0:44,0:44:99:0,99,1485 0/0:34,0:34:90:0,90,1350 0/0:32,0:32:81:0,81,1215 0/0:44,0:44:99:0,105,1575 0/0:41,0:41:99:0,108,1620 0/0:34,0:34:81:0,81,1215 ./.:0,0:0 0/0:40,0:40:99:0,99,1485 0/0:43,0:43:99:0,99,1343 0/0:37,0:37:90:0,90,1350 0/0:37,0:37:90:0,90,1350 0/0:39,0:39:99:0,102,1470 0/0:49,0:49:99:0,99,1485 1 36388191 rs191912446 G C 802.81 . AC=1;AF=5.102e-03;AN=196;BaseQRankSum=-1.891e+00;ClippingRankSum=-2.810e-01;DB;DP=3140;FS=6.584;InbreedingCoeff=-0.0055;MLEAC=1;MLEAF=5.102e-03;MQ=58.48;MQRankSum=-1.037e+00;QD=18.25;ReadPosRankSum=0.695;SOR=1.287 GT:AD:DP:GQ:PL 0/0:34,0:34:68:0,68,1205 0/0:41,0:41:99:0,102,1530 0/0:43,0:43:99:0,101,1496 0/0:38,0:38:99:0,99,1485 0/0:39,0:39:93:0,93,1395 0/0:56,0:56:99:0,120,1800 0/0:23,0:23:57:0,57,855 0/0:22,0:22:57:0,57,855 0/0:39,0:39:99:0,99,1485 0/0:40,0:40:88:0,88,1362 0/0:26,0:26:63:0,63,945 0/0:29,0:29:81:0,81,1215 ./.:0,0:0 0/0:30,0:30:60:0,60,900 0/0:29,0:29:63:0,63,945 0/0:26,0:26:51:0,51,765 0/0:33,0:33:81:0,81,1215 0/0:34,0:34:81:0,81,1215 0/0:44,0:44:93:0,93,1395 0/0:36,0:36:84:0,84,1260 0/0:29,0:29:60:0,60,900 0/0:52,0:52:67:0,67,1701 0/0:21,0:21:45:0,45,675 0/0:48,0:48:99:0,116,1638 0/0:33,0:33:72:0,72,1080 0/0:47,0:47:99:0,99,1421 0/0:19,0:19:51:0,51,765 0/0:30,0:30:60:0,60,900 0/0:20,0:20:42:0,42,630 0/0:27,0:27:54:0,54,810 0/0:23,0:23:48:0,48,720 0/0:29,0:29:63:0,63,945 0/0:21,0:21:57:0,57,855 0/0:22,0:22:39:0,39,585 0/0:37,0:37:99:0,102,1530 0/0:42,0:42:93:0,93,1395 0/0:39,0:39:99:0,102,1530 0/0:37,0:37:72:0,72,1080 0/0:24,0:24:60:0,60,900 0/0:27,0:27:57:0,57,855 0/0:18,0:18:36:0,36,540 0/0:17,0:17:42:0,42,630 0/0:29,0:29:69:0,69,1035 0/0:16,0:16:33:0,33,495 0/0:29,0:29:60:0,60,900 0/0:39,0:39:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:40,0:40:99:0,102,1530 0/0:33,0:33:90:0,90,1350 0/0:21,0:21:54:0,54,810 0/0:21,0:21:45:0,45,675 0/0:13,0:13:27:0,27,405 0/0:26,0:26:60:0,60,900 0/0:38,0:38:90:0,90,1350 0/0:25,0:25:50:0,50,903 0/0:4,0:4:12:0,12,141 0/0:42,0:42:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:19,0:19:54:0,54,810 0/0:16,0:16:39:0,39,585 0/0:38,0:38:99:0,99,1485 0/1:16,28:44:99:845,0,472 0/0:30,0:30:60:0,60,900 0/0:17,0:17:42:0,42,630 0/0:22,0:22:57:0,57,855 0/0:26,0:26:60:0,60,900 0/0:30,0:30:72:0,72,1080 0/0:24,0:24:57:0,57,855 0/0:24,0:24:42:0,42,630 0/0:23,0:23:60:0,60,900 0/0:38,0:38:81:0,81,1215 0/0:29,0:29:72:0,72,1080 0/0:41,0:41:90:0,90,1350 0/0:38,0:38:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:39,0:39:99:0,102,1530 0/0:45,0:45:94:0,94,1628 0/0:61,0:61:99:0,114,1800 0/0:42,0:42:99:0,103,1358 0/0:41,0:41:99:0,99,1485 0/0:33,0:33:84:0,84,1260 0/0:38,0:38:90:0,90,1350 0/0:42,0:42:99:0,105,1575 0/0:25,0:25:42:0,42,630 0/0:8,0:8:18:0,18,270 0/0:48,0:48:99:0,99,1485 0/0:49,0:49:99:0,111,1665 0/0:44,0:44:99:0,99,1485 0/0:16,0:16:45:0,45,675 0/0:27,0:27:54:0,54,810 0/0:40,0:40:90:0,90,1350 0/0:41,0:41:99:0,108,1620 0/0:16,0:16:45:0,45,675 ./.:0,0:0 0/0:41,0:41:93:0,93,1395 0/0:45,0:45:96:0,96,1440 0/0:38,0:38:99:0,99,1349 0/0:21,0:21:42:0,42,630 0/0:25,0:25:72:0,72,1080 0/0:32,0:32:78:0,78,1170 1 36388305 . T C 1545.83 . AC=1;AF=5.051e-03;AN=198;BaseQRankSum=-4.989e+00;ClippingRankSum=1.08;DP=3810;FS=4.684;InbreedingCoeff=-0.0077;MLEAC=1;MLEAF=5.051e-03;MQ=59.85;MQRankSum=1.65;QD=12.17;ReadPosRankSum=-5.120e-01;SOR=1.284 GT:AD:DP:GQ:PL 0/0:40,0:40:99:0,99,1485 0/0:52,0:52:99:0,102,1530 0/0:45,0:45:99:0,108,1620 0/0:39,0:39:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:40,0:40:99:0,102,1530 0/0:36,0:36:99:0,99,1485 0/0:33,0:33:81:0,81,1215 0/0:36,0:36:90:0,90,1350 0/0:43,0:43:99:0,117,1755 0/0:25,0:25:57:0,57,855 0/0:33,0:33:87:0,87,1305 0/0:1,0:1:3:0,3,35 0/0:32,0:32:72:0,72,1080 0/0:36,0:36:90:0,90,1350 0/0:37,0:37:99:0,99,1468 0/0:37,0:37:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:46,0:46:99:0,102,1530 0/0:42,0:42:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:47,0:47:99:0,102,1530 0/0:52,0:52:9:0,9,1638 0/1:71,56:127:99:1588,0,2265 0/0:25,0:25:60:0,60,900 0/0:43,0:43:99:0,105,1575 0/0:35,0:35:87:0,87,1305 0/0:23,0:23:60:0,60,900 0/0:30,0:30:72:0,72,1080 0/0:43,0:43:99:0,99,1485 0/0:30,0:30:72:0,72,1080 0/0:32,0:32:81:0,81,1215 0/0:38,0:38:90:0,90,1350 0/0:37,0:37:99:0,102,1530 0/0:41,0:41:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:40,0:40:99:0,102,1530 0/0:43,0:43:99:0,99,1485 0/0:32,0:32:75:0,75,1125 0/0:41,0:41:99:0,99,1485 0/0:28,0:28:72:0,72,1080 0/0:26,0:26:63:0,63,945 0/0:39,0:39:90:0,90,1350 0/0:23,0:23:63:0,63,945 0/0:38,0:38:90:0,90,1350 0/0:46,0:46:99:0,100,1575 0/0:41,0:41:99:0,102,1530 0/0:43,0:43:99:0,99,1485 0/0:33,0:33:88:0,88,1225 0/0:29,0:29:72:0,72,1080 0/0:40,0:40:99:0,102,1530 0/0:34,0:34:90:0,90,1350 0/0:42,0:42:99:0,102,1530 0/0:38,0:38:90:0,90,1350 0/0:42,0:42:99:0,109,1710 0/0:3,0:3:9:0,9,99 0/0:44,0:44:99:0,99,1485 0/0:48,0:48:99:0,99,1485 0/0:23,0:23:48:0,48,720 0/0:41,0:41:99:0,99,1442 0/0:43,0:43:99:0,108,1620 0/0:39,0:39:99:0,99,1283 0/0:36,0:36:99:0,99,1485 0/0:31,0:31:72:0,72,1080 0/0:37,0:37:99:0,99,1485 0/0:40,0:40:99:0,102,1530 0/0:41,0:41:99:0,99,1485 0/0:33,0:33:81:0,81,1215 0/0:35,0:35:99:0,99,1485 0/0:37,0:37:99:0,99,1485 0/0:41,0:41:93:0,93,1395 0/0:35,0:35:90:0,90,1350 0/0:40,0:40:99:0,105,1575 0/0:38,0:38:99:0,99,1353 0/0:39,0:39:99:0,99,1485 0/0:48,0:48:99:0,102,1530 0/0:40,0:40:90:0,90,1350 0/0:86,0:86:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:36,0:36:99:0,99,1485 0/0:35,0:35:81:0,81,1215 0/0:18,0:18:48:0,48,720 0/0:49,0:49:99:0,99,1485 0/0:41,0:41:99:0,102,1530 0/0:44,0:44:99:0,99,1485 0/0:33,0:33:81:0,81,1215 0/0:27,0:27:63:0,63,945 0/0:43,0:43:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:19,0:19:51:0,51,765 ./.:1,0:1 0/0:42,0:42:99:0,99,1485 0/0:43,0:43:99:0,108,1583 0/0:39,0:39:99:0,99,1485 0/0:28,0:28:72:0,72,1080 0/0:38,0:38:99:0,101,1575 0/0:50,0:50:99:0,105,1575 1 36388482 . G A 3528.78 . AC=1;AF=5.000e-03;AN=200;BaseQRankSum=-6.326e+00;ClippingRankSum=0.309;DP=4385;FS=0.871;InbreedingCoeff=-0.0074;MLEAC=1;MLEAF=5.000e-03;MQ=58.45;MQRankSum=-1.200e-02;QD=11.46;ReadPosRankSum=0.074;SOR=0.749 GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,99,1485 0/0:52,0:52:99:0,102,1530 0/0:45,0:45:99:0,108,1620 0/0:39,0:39:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:40,0:40:99:0,102,1530 0/0:41,0:41:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:42,0:42:99:0,102,1530 0/0:51,0:51:99:0,105,1575 0/0:38,0:38:99:0,99,1443 0/0:41,0:41:99:0,99,1485 0/0:1,0:1:3:0,3,37 0/0:42,0:42:99:0,102,1530 0/0:39,0:39:99:0,99,1485 0/0:37,0:37:99:0,99,1468 0/0:44,0:44:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:46,0:46:99:0,102,1530 0/0:54,0:54:99:0,120,1800 0/0:40,0:40:99:0,99,1485 0/0:47,0:47:99:0,102,1530 0/0:44,0:44:99:0,99,1485 0/0:58,0:58:99:0,102,1530 0/0:44,0:44:99:0,102,1519 0/0:43,0:43:99:0,105,1575 0/0:43,0:43:99:0,99,1485 0/0:47,0:47:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:40,0:40:99:0,99,1372 0/0:46,0:46:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:40,0:40:99:0,102,1530 0/0:43,0:43:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:47,0:47:99:0,102,1530 0/0:39,0:39:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:43,0:43:99:0,102,1530 0/0:46,0:46:99:0,100,1575 0/0:41,0:41:99:0,102,1530 0/0:43,0:43:99:0,99,1485 0/0:35,0:35:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:42,0:42:99:0,102,1530 0/0:39,0:39:99:0,99,1485 0/0:56,0:56:99:0,99,1485 0/0:3,0:3:9:0,9,102 0/0:44,0:44:99:0,99,1485 0/0:48,0:48:99:0,99,1485 0/0:41,0:41:95:0,95,1405 0/0:41,0:41:99:0,99,1442 0/0:43,0:43:99:0,108,1620 0/0:39,0:39:99:0,99,1283 0/0:36,0:36:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:37,0:37:99:0,99,1485 0/0:40,0:40:99:0,102,1530 0/0:41,0:41:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:43,0:43:99:0,105,1575 0/0:45,0:45:99:0,99,1485 0/0:40,0:40:99:0,105,1575 0/0:38,0:38:99:0,99,1353 0/0:39,0:39:99:0,99,1485 0/0:48,0:48:99:0,102,1530 0/0:45,0:45:99:0,99,1485 0/1:172,136:308:99:3571,0,5318 0/0:42,0:42:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:36,0:36:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:25,0:25:54:0,54,810 0/0:49,0:49:99:0,99,1485 0/0:41,0:41:99:0,102,1530 0/0:44,0:44:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:40,0:40:99:0,102,1530 0/0:43,0:43:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:44,0:44:99:0,102,1530 0/0:4,0:4:12:0,12,147 0/0:42,0:42:99:0,99,1485 0/0:43,0:43:99:0,108,1583 0/0:39,0:39:99:0,99,1485 0/0:47,0:47:99:0,108,1620 0/0:38,0:38:99:0,101,1575 0/0:47,0:47:99:0,102,1530 1 36388497 rs72661619 G A 761.77 . AC=1;AF=5.000e-03;AN=200;BaseQRankSum=-2.260e-01;ClippingRankSum=1.76;DB;DP=4141;FS=12.567;InbreedingCoeff=-0.0070;MLEAC=1;MLEAF=5.000e-03;MQ=59.39;MQRankSum=0.414;QD=11.20;ReadPosRankSum=0.213;SOR=2.384 GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,99,1485 0/0:52,0:52:99:0,102,1530 0/0:45,0:45:99:0,108,1620 0/0:39,0:39:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:40,0:40:99:0,102,1530 0/0:41,0:41:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:42,0:42:99:0,102,1530 0/0:51,0:51:99:0,105,1575 0/0:38,0:38:99:0,99,1443 0/0:41,0:41:99:0,99,1485 0/0:1,0:1:3:0,3,37 0/0:42,0:42:99:0,102,1530 0/0:39,0:39:99:0,99,1485 0/0:37,0:37:99:0,99,1468 0/0:44,0:44:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:46,0:46:99:0,102,1530 0/0:60,0:60:85:0,85,1874 0/0:40,0:40:99:0,99,1485 0/0:47,0:47:99:0,102,1530 0/0:44,0:44:99:0,99,1485 0/0:58,0:58:99:0,102,1530 0/0:44,0:44:99:0,102,1519 0/0:43,0:43:99:0,105,1575 0/0:43,0:43:99:0,99,1485 0/0:47,0:47:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:40,0:40:99:0,99,1372 0/0:45,0:45:99:0,102,1530 0/0:41,0:41:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:40,0:40:99:0,102,1530 0/0:43,0:43:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:47,0:47:99:0,102,1530 0/0:39,0:39:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/1:41,27:68:99:804,0,1363 0/0:46,0:46:99:0,100,1575 0/0:41,0:41:99:0,102,1530 0/0:43,0:43:99:0,99,1485 0/0:35,0:35:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:42,0:42:99:0,102,1530 0/0:39,0:39:99:0,99,1485 0/0:56,0:56:99:0,99,1485 0/0:4,0:4:12:0,12,132 0/0:44,0:44:99:0,99,1485 0/0:48,0:48:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:41,0:41:99:0,99,1442 0/0:43,0:43:99:0,108,1620 0/0:39,0:39:99:0,99,1283 0/0:36,0:36:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:37,0:37:99:0,99,1485 0/0:40,0:40:99:0,102,1530 0/0:41,0:41:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:43,0:43:99:0,105,1575 0/0:45,0:45:99:0,99,1485 0/0:40,0:40:99:0,105,1575 0/0:38,0:38:99:0,99,1353 0/0:39,0:39:99:0,99,1485 0/0:48,0:48:99:0,102,1530 0/0:45,0:45:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:36,0:36:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:19,0:19:51:0,51,765 0/0:49,0:49:99:0,99,1485 0/0:41,0:41:99:0,102,1530 0/0:44,0:44:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:40,0:40:99:0,102,1530 0/0:43,0:43:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:44,0:44:99:0,102,1530 0/0:5,0:5:15:0,15,188 0/0:42,0:42:99:0,99,1485 0/0:43,0:43:99:0,108,1583 0/0:39,0:39:99:0,99,1485 0/0:47,0:47:99:0,108,1620 0/0:38,0:38:99:0,101,1575 0/0:47,0:47:99:0,102,1530 1 36388535 rs192229737 G A 1375.74 . AC=1;AF=5.000e-03;AN=200;BaseQRankSum=-4.380e+00;ClippingRankSum=-2.660e-01;DB;DP=4163;FS=6.780;InbreedingCoeff=-0.0063;MLEAC=1;MLEAF=5.000e-03;MQ=59.55;MQRankSum=1.52;QD=15.12;ReadPosRankSum=-1.426e+00;SOR=1.204 GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,99,1485 0/0:52,0:52:99:0,102,1530 0/0:45,0:45:99:0,108,1620 0/0:39,0:39:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:40,0:40:99:0,102,1530 0/0:41,0:41:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:42,0:42:99:0,102,1530 0/0:51,0:51:99:0,105,1575 0/0:38,0:38:99:0,99,1443 0/0:44,0:44:99:0,99,1485 0/0:5,0:5:15:0,15,166 0/0:42,0:42:99:0,102,1530 0/0:39,0:39:99:0,99,1485 0/0:37,0:37:99:0,99,1468 0/0:44,0:44:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:46,0:46:99:0,102,1530 0/0:39,0:39:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:47,0:47:99:0,102,1530 0/0:44,0:44:99:0,99,1485 0/0:58,0:58:99:0,102,1530 0/0:44,0:44:99:0,102,1519 0/0:43,0:43:99:0,105,1575 0/0:43,0:43:99:0,99,1485 0/0:47,0:47:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:40,0:40:99:0,99,1372 0/0:45,0:45:99:0,102,1530 0/0:41,0:41:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:40,0:40:99:0,102,1530 0/0:43,0:43:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:47,0:47:99:0,102,1530 0/0:44,0:44:99:0,102,1530 0/0:44,0:44:90:0,90,1350 0/0:43,0:43:99:0,99,1485 0/0:38,0:38:72:0,72,1080 0/0:44,0:44:99:0,102,1530 0/0:46,0:46:99:0,100,1575 0/1:44,47:91:99:1418,0,1394 0/0:43,0:43:99:0,99,1485 0/0:35,0:35:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:42,0:42:99:0,102,1530 0/0:39,0:39:99:0,99,1485 0/0:56,0:56:99:0,99,1485 0/0:2,0:2:6:0,6,65 0/0:44,0:44:99:0,99,1485 0/0:48,0:48:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:41,0:41:99:0,99,1442 0/0:43,0:43:99:0,108,1620 0/0:39,0:39:99:0,99,1283 0/0:36,0:36:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:37,0:37:99:0,99,1485 0/0:40,0:40:99:0,102,1530 0/0:41,0:41:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:43,0:43:99:0,105,1575 0/0:45,0:45:99:0,99,1485 0/0:40,0:40:99:0,105,1575 0/0:38,0:38:99:0,99,1353 0/0:39,0:39:99:0,99,1485 0/0:48,0:48:99:0,102,1530 0/0:45,0:45:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:36,0:36:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:21,0:21:60:0,60,900 0/0:49,0:49:99:0,99,1485 0/0:41,0:41:99:0,102,1530 0/0:44,0:44:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:44,0:44:99:0,102,1530 0/0:7,0:7:18:0,18,270 0/0:42,0:42:99:0,99,1485 0/0:43,0:43:99:0,108,1583 0/0:39,0:39:99:0,99,1485 0/0:47,0:47:99:0,108,1620 0/0:38,0:38:99:0,101,1575 0/0:47,0:47:99:0,102,1530 1 36389823 . G A 534.82 . AC=1;AF=5.051e-0129e+00;ClippingRankSum=-2.640e-01;DP=3904;FS=0.000;InbreedingCoeff=-0.0073;MLEAC=1;MLEAF=5.051e-03;MQ=59.25;MQRankSum=0.588;QD=17.25;ReadPosRankSum=0.223;SOR=0.495 GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,99,1485 0/0:52,0:52:99:0,102,1530 0/0:45,0:45:99:0,108,1620 0/0:39,0:39:99:0,99,1485 0/0:43,0:43:99:0,105,1575 0/0:40,0:40:99:0,102,1530 0/0:40,0:40:99:0,99,1481 0/0:41,0:41:99:0,99,1485 0/0:42,0:42:99:0,102,1530 0/0:51,0:51:99:0,105,1575 0/0:47,0:47:99:0,102,1530 0/0:38,0:38:99:0,99,1485 0/0:5,0:5:9:0,9,135 0/0:38,0:38:99:0,99,1485 0/0:36,0:36:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:40,0:40:99:0,102,1530 0/0:42,0:42:99:0,99,1485 0/0:46,0:46:99:0,102,1530 0/0:18,0:18:48:0,48,720 0/0:40,0:40:99:0,99,1485 0/0:47,0:47:99:0,102,1530 0/0:37,0:37:99:0,99,1485 0/0:58,0:58:99:0,102,1530 0/0:40,0:40:99:0,99,1485 0/0:23,0:23:63:0,63,945 0/0:33,0:33:90:0,90,1306 0/0:39,0:39:99:0,99,1485 0/0:34,0:34:90:0,90,1350 0/0:45,0:45:99:0,99,1485 0/0:33,0:33:72:0,72,1080 0/0:44,0:44:99:0,105,1575 0/0:39,0:39:99:0,99,1485 0/1:12,19:31:99:577,0,349 0/0:41,0:41:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:51,0:51:66:0,66,1781 0/0:38,0:38:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:27,0:27:63:0,63,945 0/0:43,0:43:99:0,105,1575 0/0:39,0:39:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:46,0:46:99:0,100,1575 0/0:47,0:47:99:0,108,1620 0/0:43,0:43:99:0,99,1485 0/0:46,0:46:99:0,102,1530 0/0:38,0:38:93:0,93,1395 0/0:43,0:43:99:0,108,1620 0/0:35,0:35:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:34,0:34:81:0,81,1215 ./.:0,0:0 0/0:44,0:44:99:0,99,1485 0/0:48,0:48:99:0,99,1485 0/0:37,0:37:99:0,99,1485 0/0:41,0:41:99:0,99,1442 0/0:43,0:43:99:0,108,1620 0/0:42,0:42:99:0,105,1575 0/0:36,0:36:99:0,99,1485 0/0:34,0:34:87:0,87,1305 0/0:44,0:44:99:0,99,1485 0/0:40,0:40:99:0,102,1530 0/0:42,0:42:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:42,0:42:99:0,105,1498 0/0:34,0:34:81:0,81,1215 0/0:48,0:48:99:0,102,1530 0/0:19,0:19:45:0,45,675 0/0:40,0:40:99:0,105,1575 0/0:38,0:38:99:0,99,1353 0/0:39,0:39:99:0,99,1485 0/0:48,0:48:99:0,102,1530 0/0:45,0:45:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:37,0:37:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:36,0:36:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:13,0:13:36:0,36,540 0/0:49,0:49:99:0,99,1485 0/0:41,0:41:99:0,102,1530 0/0:44,0:44:99:0,99,1485 0/0:28,0:28:72:0,72,1080 0/0:29,0:29:72:0,72,1080 0/0:43,0:43:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:34,0:34:90:0,90,1350 0/0:3,0:3:3:0,3,45 0/0:42,0:42:99:0,99,1485 0/0:43,0:43:99:0,108,1583 0/0:38,0:38:93:0,93,1395 0/0:44,0:44:99:0,99,1485 0/0:38,0:38:99:0,101,1575 0/0:56,0:56:99:0,103,1800 1 36389885 rs147996549 G T 3135.87 . AC=3;AF=0.015;AN=198;BaseQRankSum=-7.840e-01;ClippingRankSum=0.123;DB;DP=4220;FS=4.519;InbreedingCoeff=-0.0185;MLEAC=3;MLEAF=0.015;MQ=58.39;MQRankSum=0.022;QD=12.35;ReadPosRankSum=-1.040e-01;SOR=0.457 GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,99,1485 0/0:52,0:52:99:0,102,1530 0/0:45,0:45:99:0,108,1620 0/0:39,0:39:99:0,99,1485 0/0:46,0:46:99:0,99,1485 0/0:40,0:40:99:0,102,1530 0/0:49,0:49:99:0,99,1485 0/0:43,0:43:99:0,102,1530 0/0:42,0:42:99:0,102,1530 0/0:51,0:51:99:0,105,1575 0/0:46,0:46:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:1,0:1:3:0,3,33 0/0:38,0:38:99:0,99,1485 0/0:47,0:47:99:0,99,1485 0/1:30,26:56:99:747,0,895 0/0:54,0:54:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:46,0:46:99:0,102,1530 0/0:14,0:14:30:0,30,450 0/0:40,0:40:99:0,99,1485 0/0:47,0:47:99:0,102,1530 0/0:43,0:43:99:0,99,1485 0/0:58,0:58:99:0,102,1530 0/0:42,0:42:99:0,105,1484 0/0:8,0:8:24:0,24,274 0/0:43,0:43:99:0,99,1485 0/0:48,0:48:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:52,0:52:99:0,99,1485 0/0:45,0:45:99:0,102,1530 0/0:47,0:47:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:43,0:43:99:0,102,1530 0/0:46,0:46:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:32,0:32:84:0,84,1260 0/0:39,0:39:99:0,99,1485 0/0:46,0:46:99:0,99,1485 0/0:38,0:38:90:0,90,1350 0/0:39,0:39:99:0,99,1485 0/0:46,0:46:99:0,100,1575 0/0:47,0:47:99:0,108,1620 0/0:43,0:43:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:26,0:26:60:0,60,900 0/0:46,0:46:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:55,0:55:99:0,104,1575 0/0:51,0:51:99:0,99,1485 0/0:40,0:40:99:0,102,1530 ./.:0,0:0 0/0:44,0:44:99:0,99,1485 0/0:48,0:48:99:0,99,1485 0/0:37,0:37:90:0,90,1350 0/0:48,0:48:99:0,99,1485 0/0:43,0:43:99:0,108,1620 0/0:41,0:41:99:0,102,1530 0/0:36,0:36:99:0,99,1485 0/0:37,0:37:90:0,90,1350 0/0:44,0:44:99:0,99,1485 0/0:48,0:48:99:0,102,1530 0/0:45,0:45:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:46,0:46:99:0,111,1665 0/0:44,0:44:99:0,102,1530 0/0:48,0:48:99:0,99,1485 0/0:26,0:26:57:0,57,855 0/0:43,0:43:99:0,99,1485 0/0:38,0:38:99:0,99,1353 0/0:39,0:39:99:0,99,1485 0/1:76,52:128:99:1510,0,2402 0/0:45,0:45:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:44,0:44:99:0,102,1530 0/0:36,0:36:99:0,99,1485 0/0:46,0:46:99:0,99,1485 0/0:10,0:10:30:0,30,366 0/0:49,0:49:99:0,99,1485 0/0:41,0:41:99:0,102,1530 0/0:44,0:44:99:0,99,1485 0/0:37,0:37:99:0,99,1485 0/0:34,0:34:90:0,90,1350 0/0:47,0:47:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:1,0:1:3:0,3,33 0/0:42,0:42:99:0,99,1485 0/0:43,0:43:99:0,108,1583 0/0:40,0:40:99:0,105,1482 0/0:41,0:41:99:0,99,1485 0/0:38,0:38:99:0,101,1575 0/1:31,39:70:99:953,0,847 1 36389944 . T C 949.80 . AC=1;AF=5.051e-03;AN=198;BaseQRankSum=2.65;ClippingRankSum=-1.660e-01;DP=4073;FS=8.698;InbreedingCoeff=-0.0068;MLEAC=1;MLEAF=5.051e-03;MQ=59.51;MQRankSum=1.36;QD=20.21;ReadPosRankSum=0.210;SOR=0.152 GT:AD:DP:GQ:PL 0/0:43,0:43:99:0,99,1485 0/0:52,0:52:99:0,102,1530 0/0:45,0:45:99:0,108,1620 0/0:39,0:39:99:0,99,1485 0/0:46,0:46:99:0,99,1485 0/0:40,0:40:99:0,102,1530 0/0:41,0:41:99:0,102,1530 0/0:43,0:43:99:0,102,1530 0/0:42,0:42:99:0,102,1530 0/0:51,0:51:99:0,105,1575 0/0:46,0:46:96:0,96,1440 0/0:42,0:42:99:0,99,1485 ./.:0,0:0 0/0:38,0:38:99:0,99,1485 0/0:38,0:38:99:0,99,1420 0/0:49,0:49:99:0,111,1665 0/0:42,0:42:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:46,0:46:99:0,102,1530 0/0:19,0:19:48:0,48,720 0/0:40,0:40:99:0,99,1485 0/0:47,0:47:99:0,102,1530 0/0:43,0:43:99:0,99,1485 0/0:58,0:58:99:0,102,1530 0/0:36,0:36:72:0,72,1080 0/0:10,0:10:21:0,21,315 0/0:48,0:48:93:0,93,1395 0/1:17,30:47:99:992,0,476 0/0:41,0:41:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:43,0:43:99:0,100,1575 0/0:45,0:45:99:0,99,1485 0/0:31,0:31:81:0,81,1215 0/0:41,0:41:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:43,0:43:99:0,102,1530 0/0:46,0:46:99:0,99,1485 0/0:39,0:39:93:0,93,1395 0/0:49,0:49:99:0,108,1620 0/0:44,0:44:99:0,99,1485 0/0:37,0:37:78:0,78,1170 0/0:52,0:52:99:0,105,1575 0/0:39,0:39:96:0,96,1440 0/0:47,0:47:87:0,87,1305 0/0:46,0:46:99:0,100,1575 0/0:47,0:47:99:0,108,1620 0/0:43,0:43:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:39,0:39:93:0,93,1395 0/0:42,0:42:99:0,102,1530 0/0:44,0:44:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:51,0:51:99:0,99,1485 0/0:49,0:49:99:0,105,1575 0/0:2,0:2:6:0,6,66 0/0:44,0:44:99:0,99,1485 0/0:48,0:48:99:0,99,1485 0/0:43,0:43:87:0,87,1305 0/0:39,0:39:99:0,99,1485 0/0:43,0:43:99:0,108,1620 0/0:41,0:41:99:0,102,1530 0/0:36,0:36:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:35,0:35:75:0,75,1125 0/0:42,0:42:99:0,102,1530 0/0:27,0:27:57:0,57,855 0/0:43,0:43:99:0,99,1485 0/0:38,0:38:99:0,99,1353 0/0:39,0:39:99:0,99,1485 0/0:46,0:46:99:0,99,1485 0/0:45,0:45:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:49,0:49:99:0,105,1575 0/0:44,0:44:99:0,102,1530 0/0:36,0:36:99:0,99,1485 0/0:46,0:46:99:0,99,1485 0/0:10,0:10:21:0,21,315 0/0:49,0:49:99:0,99,1485 0/0:41,0:41:99:0,102,1530 0/0:44,0:44:99:0,99,1485 0/0:33,0:33:75:0,75,1125 0/0:39,0:39:90:0,90,1350 0/0:47,0:47:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:3,0:3:9:0,9,96 0/0:42,0:42:99:0,99,1485 0/0:43,0:43:99:0,108,1583 0/0:43,0:43:99:0,111,1665 0/0:39,0:39:99:0,99,1340 0/0:38,0:38:99:0,101,1575 0/0:44,0:44:99:0,99,1485 1 36390194 rs72661620 G A 134.57 . AC=1;AF=5.682e-03;AN=176;BaseQRankSum=1.50;ClippingRankSum=-9.220e-01;DB;DP=505;FS=0.000;InbreedingCoeff=-0.0623;MLEAC=1;MLEAF=5.682e-03;MQ=60.00;MQRankSum=0.922;QD=19.22;ReadPosRankSum=-9.220e-01;SOR=1.609 GT:AD:DP:GQ:PL 0/0:4,0:4:6:0,6,90 0/0:6,0:6:18:0,18,218 0/0:8,0:8:18:0,18,270 0/0:6,0:6:9:0,9,135 0/0:7,0:7:15:0,15,225 0/0:7,0:7:12:0,12,180 0/0:2,0:2:6:0,6,66 0/0:2,0:2:6:0,6,73 0/0:5,0:5:12:0,12,180 0/0:2,0:2:3:0,3,45 0/0:2,0:2:6:0,6,77 ./.:0,0:0 ./.:0,0:0 0/0:3,0:3:6:0,6,90 0/0:4,0:4:12:0,12,138 0/0:4,0:4:9:0,9,135 0/0:5,0:5:15:0,15,169 0/0:5,0:5:12:0,12,180 0/0:7,0:7:21:0,21,267 ./.:0,0:0 0/0:4,0:4:6:0,6,90 0/0:6,0:6:9:0,9,135 0/0:1,0:1:3:0,3,35 0/0:14,0:14:39:0,39,585 0/0:2,0:2:6:0,6,70 ./.:0,0:0 0/0:3,0:3:9:0,9,113 0/0:5,0:5:15:0,15,179 0/0:2,0:2:6:0,6,72 0/0:8,0:8:12:0,12,180 0/0:2,0:2:3:0,3,45 0/0:4,0:4:12:0,12,146 0/0:7,0:7:12:0,12,180 0/0:4,0:4:12:0,12,137 0/0:2,0:2:6:0,6,73 0/0:8,0:8:18:0,18,270 0/0:5,0:5:9:0,9,135 0/0:3,0:3:3:0,3,45 0/0:7,0:7:15:0,15,225 0/0:3,0:3:9:0,9,98 0/0:4,0:4:12:0,12,134 0/0:1,0:1:3:0,3,38 0/0:4,0:4:6:0,6,90 ./.:0,0:0 0/1:2,5:7:54:175,0,54 0/0:5,0:5:15:0,15,189 0/0:6,0:6:15:0,15,225 0/0:5,0:5:12:0,12,180 0/0:11,0:11:27:0,27,405 0/0:2,0:2:6:0,6,68 0/0:5,0:5:12:0,12,180 0/0:7,0:7:18:0,18,270 0/0:3,0:3:9:0,9,115 0/0:5,0:5:15:0,15,177 ./.:0,0:0 0/0:1,0:1:3:0,3,29 0/0:11,0:11:21:0,21,315 0/0:17,0:17:39:0,39,585 0/0:4,0:4:6:0,6,90 0/0:5,0:5:12:0,12,180 0/0:5,0:5:12:0,12,180 0/0:5,0:5:12:0,12,180 0/0:3,0:3:6:0,6,90 0/0:6,0:6:15:0,15,225 0/0:5,0:5:15:0,15,162 0/0:2,0:2:6:0,6,72 0/0:3,0:3:9:0,9,109 0/0:4,0:4:12:0,12,141 0/0:5,0:5:12:0,12,180 0/0:2,0:2:6:0,6,71 0/0:1,0:1:3:0,3,30 0/0:4,0:4:12:0,12,130 0/0:4,0:4:9:0,9,135 0/0:13,0:13:30:0,30,450 0/0:10,0:10:14:0,14,318 0/0:23,0:23:60:0,60,900 0/0:4,0:4:12:0,12,156 0/0:19,0:19:42:0,42,630 0/0:5,0:5:6:0,6,90 0/0:4,0:4:12:0,12,136 0/0:7,0:7:21:0,21,263 0/0:2,0:2:6:0,6,70 0/0:6,0:6:15:0,15,225 ./.:1,0:1 ./.:0,0:0 0/0:22,0:22:54:0,54,810 0/0:9,0:9:18:0,18,270 0/0:8,0:8:9:0,9,135 0/0:5,0:5:15:0,15,191 0/0:4,0:4:0:0,0,84 0/0:4,0:4:9:0,9,135 0/0:15,0:15:30:0,30,450 0/0:4,0:4:12:0,12,150 ./.:0,0:0 ./.:0,0:0 0/0:8,0:8:18:0,18,270 0/0:4,0:4:6:0,6,90 ./.:0,0:0 0/0:7,0:7:18:0,18,270 ./.:0,0:0 1 36396574 rs147513408 G A 110.66 . AC=1;AF=5.556e-03;AN=180;BaseQRankSum=2.22;ClippingRankSum=0.361;DB;DP=579;FS=0.000;InbreedingCoeff=-0.0388;MLEAC=1;MLEAF=5.556e-03;MQ=57.66;MQRankSum=-7.290e-01;QD=12.30;ReadPosRankSum=1.65;SOR=0.223 GT:AD:DP:GQ:PL 0/0:3,0:3:9:0,9,104 0/0:2,0:2:3:0,3,45 0/0:4,0:4:12:0,12,98 0/0:9,0:9:24:0,24,360 0/0:4,0:4:9:0,9,135 0/0:5,0:5:9:0,9,135 0/0:6,0:6:18:0,18,216 0/0:4,0:4:0:0,0,79 0/0:6,0:6:15:0,15,225 0/0:2,0:2:6:0,6,63 0/0:5,0:5:15:0,15,170 0/0:8,0:8:18:0,18,270 0/1:4,5:9:74:151,0,74 0/0:5,0:5:12:0,12,180 0/0:7,0:7:18:0,18,270 0/0:7,0:7:0:0,0,28 0/0:4,0:4:9:0,9,135 0/0:9,0:9:0:0,0,222 0/0:5,0:5:9:0,9,135 ./.:0,0:0 0/0:4,0:4:6:0,6,90 0/0:8,0:8:18:0,18,270 0/0:5,0:5:12:0,12,180 0/0:16,0:16:39:0,39,585 0/0:5,0:5:15:0,15,153 ./.:0,0:0 ./.:3,0:3 0/0:8,0:8:24:0,24,275 0/0:4,0:4:12:0,12,142 0/0:2,0:2:3:0,3,45 ./.:1,0:1 0/0:4,0:4:12:0,12,129 0/0:5,0:5:12:0,12,180 ./.:1,0:1 0/0:11,0:11:18:0,18,270 0/0:12,0:12:12:0,12,269 0/0:5,0:5:12:0,12,180 0/0:4,0:4:12:0,12,127 0/0:5,0:5:15:0,15,159 0/0:8,0:8:24:0,24,246 0/0:2,0:2:6:0,6,64 0/0:1,0:1:3:0,3,30 0/0:1,0:1:3:0,3,24 0/0:4,0:4:12:0,12,140 0/0:4,0:4:12:0,12,130 0/0:9,0:9:24:0,24,360 0/0:9,0:9:27:0,27,286 0/0:3,0:3:9:0,9,92 0/0:11,0:11:33:0,33,368 0/0:4,0:4:12:0,12,130 0/0:4,0:4:9:0,9,135 0/0:3,0:3:6:0,6,90 0/0:3,0:3:6:0,6,90 0/0:6,0:6:18:0,18,191 ./.:0,0:0 0/0:6,0:6:18:0,18,164 0/0:8,0:8:15:0,15,225 0/0:11,0:11:27:0,27,405 0/0:5,0:5:15:0,15,170 0/0:4,0:4:6:0,6,90 0/0:13,0:13:27:0,27,405 0/0:6,0:6:18:0,18,222 ./.:9,0:9 0/0:4,0:4:9:0,9,135 0/0:5,0:5:12:0,12,180 0/0:7,0:7:18:0,18,270 0/0:6,0:6:15:0,15,225 0/0:3,0:3:6:0,6,90 0/0:6,0:6:9:0,9,135 0/0:3,0:3:9:0,9,102 0/0:11,0:11:27:0,27,405 0/0:4,0:4:12:0,12,118 0/0:8,0:8:21:0,21,315 0/0:6,0:6:18:0,18,178 0/0:8,0:8:24:0,24,246 0/0:11,0:11:0:0,0,19 0/0:4,0:4:12:0,12,142 0/0:17,0:17:30:0,30,450 0/0:5,0:5:9:0,9,135 0/0:5,0:5:12:0,12,180 0/0:12,0:12:9:0,9,135 0/0:9,0:9:24:0,24,360 0/0:5,0:5:15:0,15,196 0/0:7,0:7:18:0,18,270 0/0:1,0:1:3:0,3,27 0/0:19,0:19:48:0,48,720 0/0:6,0:6:0:0,0,129 ./.:7,0:7 ./.:2,0:2 0/0:5,0:5:15:0,15,150 0/0:3,0:3:9:0,9,88 0/0:10,0:10:30:0,30,341 0/0:7,0:7:0:0,0,6 0/0:5,0:5:12:0,12,180 0/0:6,0:6:18:0,18,218 0/0:10,0:10:24:0,24,360 0/0:5,0:5:15:0,15,175 0/0:2,0:2:3:0,3,45 0/0:3,0:3:9:0,9,91 ./.:0,0:0 1 36396647 . A G 404 . AC=1;AF=5.263e-03;AN=190;BaseQRankSum=0.00;ClippingRankSum=-1.974e+00;DP=1221;FS=0.000;InbreedingCoeff=-0.0084;MLEAC=1;MLEAF=5.263e-03;MQ=58.08;MQRankSum=-9.870e-01;QD=18.36;ReadPosRankSum=-2.608e+00;SOR=0.293 GT:AD:DP:GQ:PL 0/0:8,0:8:24:0,24,281 0/1:7,15:22:99:446,0,169 0/0:17,0:17:39:0,39,585 0/0:11,0:11:27:0,27,405 0/0:13,0:13:24:0,24,360 0/0:13,0:13:36:0,36,540 0/0:8,0:8:18:0,18,270 0/0:8,0:8:24:0,24,268 0/0:15,0:15:45:0,45,544 0/0:10,0:10:30:0,30,323 0/0:19,0:19:54:0,54,810 0/0:6,0:6:15:0,15,225 0/0:21,0:21:54:0,54,810 0/0:17,0:17:45:0,45,675 0/0:12,0:12:33:0,33,495 0/0:8,0:8:24:0,24,215 0/0:16,0:16:36:0,36,540 0/0:10,0:10:27:0,27,405 0/0:13,0:13:36:0,36,540 ./.:0,0:0 0/0:10,0:10:27:0,27,405 0/0:14,0:14:42:0,42,479 0/0:11,0:11:24:0,24,360 0/0:27,0:27:66:0,66,990 0/0:13,0:13:33:0,33,495 ./.:0,0:0 0/0:10,0:10:27:0,27,405 0/0:13,0:13:27:0,27,405 0/0:6,0:6:18:0,18,235 0/0:11,0:11:33:0,33,386 0/0:5,0:5:12:0,12,180 0/0:9,0:9:24:0,24,360 0/0:13,0:13:30:0,30,450 0/0:11,0:11:30:0,30,450 0/0:9,0:9:24:0,24,360 0/0:19,0:19:54:0,54,810 0/0:12,0:12:36:0,36,424 0/0:16,0:16:42:0,42,630 0/0:9,0:9:24:0,24,360 0/0:13,0:13:36:0,36,540 0/0:8,0:8:24:0,24,246 0/0:6,0:6:18:0,18,197 0/0:12,0:12:27:0,27,405 0/0:9,0:9:21:0,21,315 0/0:12,0:12:30:0,30,450 0/0:16,0:16:45:0,45,675 0/0:17,0:17:51:0,51,583 0/0:18,0:18:51:0,51,765 0/0:9,0:9:21:0,21,315 0/0:8,0:8:18:0,18,270 0/0:8,0:8:21:0,21,315 0/0:9,0:9:24:0,24,360 0/0:10,0:10:30:0,30,369 0/0:12,0:12:36:0,36,426 ./.:0,0:0 0/0:20,0:20:57:0,57,855 0/0:16,0:16:45:0,45,675 0/0:22,0:22:60:0,60,900 0/0:6,0:6:15:0,15,225 0/0:13,0:13:30:0,30,450 0/0:15,0:15:39:0,39,585 0/0:13,0:13:39:0,39,497 0/0:11,0:11:30:0,30,450 0/0:10,0:10:30:0,30,340 0/0:6,0:6:15:0,15,225 0/0:13,0:13:36:0,36,540 0/0:11,0:11:30:0,30,450 0/0:7,0:7:18:0,18,270 ./.:2,0:2 0/0:9,0:9:18:0,18,270 0/0:14,0:14:36:0,36,540 0/0:9,0:9:24:0,24,360 0/0:12,0:12:30:0,30,450 0/0:15,0:15:36:0,36,540 0/0:15,0:15:20:0,20,397 0/0:12,0:12:33:0,33,495 0/0:10,0:10:24:0,24,360 0/0:40,0:40:99:0,102,1530 0/0:18,0:18:39:0,39,585 0/0:7,0:7:18:0,18,270 0/0:25,0:25:57:0,57,855 0/0:13,0:13:30:0,30,450 0/0:16,0:16:48:0,48,555 0/0:14,0:14:42:0,42,480 0/0:5,0:5:15:0,15,184 0/0:42,0:42:99:0,102,1342 0/0:17,0:17:48:0,48,720 0/0:11,0:11:30:0,30,450 0/0:6,0:6:12:0,12,180 0/0:4,0:4:12:0,12,119 0/0:17,0:17:39:0,39,585 0/0:23,0:23:61:0,61,734 0/0:7,0:7:21:0,21,226 0/0:7,0:7:15:0,15,225 0/0:19,0:19:54:0,54,810 0/0:13,0:13:33:0,33,495 0/0:7,0:7:18:0,18,270 0/0:10,0:10:27:0,27,405 0/0:7,0:7:21:0,21,249 ./.:0,0:0 1 36396654 . G A 320.11 . AC=1;AF=5.208e-03;AN=192;BaseQRankSum=0.609;ClippingRankSum=0.328;DP=1412;FS=0.000;InbreedingCoeff=-0.0125;MLEAC=1;MLEAF=5.208e-03;MQ=60.00;MQRankSum=1.55;QD=17.78;ReadPosRankSum=-2.295e+00;SOR=0.914 GT:AD:DP:GQ:PL 0/0:12,0:12:27:0,27,405 0/0:23,0:23:57:0,57,855 0/0:19,0:19:39:0,39,585 0/0:14,0:14:39:0,39,585 0/0:10,0:10:24:0,24,360 0/0:17,0:17:45:0,45,675 0/0:11,0:11:24:0,24,360 0/0:7,0:7:21:0,21,221 0/0:15,0:15:42:0,42,630 0/0:11,0:11:33:0,33,330 0/0:21,0:21:48:0,48,720 0/0:6,0:6:12:0,12,180 0/0:22,0:22:39:0,39,585 0/1:6,12:18:99:362,0,136 0/0:17,0:17:48:0,48,720 0/0:12,0:12:21:0,21,315 0/0:14,0:14:30:0,30,450 0/0:14,0:14:39:0,39,585 0/0:18,0:18:48:0,48,720 ./.:0,0:0 0/0:12,0:12:30:0,30,450 0/0:18,0:18:54:0,54,653 0/0:13,0:13:33:0,33,495 0/0:28,0:28:63:0,63,936 0/0:14,0:14:30:0,30,450 ./.:0,0:0 0/0:11,0:11:27:0,27,405 0/0:16,0:16:36:0,36,540 0/0:6,0:6:18:0,18,235 0/0:15,0:15:42:0,42,630 0/0:7,0:7:18:0,18,270 0/0:9,0:9:18:0,18,270 0/0:14,0:14:36:0,36,540 0/0:13,0:13:33:0,33,495 0/0:14,0:14:33:0,33,495 0/0:23,0:23:60:0,60,900 0/0:14,0:14:39:0,39,585 0/0:20,0:20:57:0,57,855 0/0:12,0:12:33:0,33,495 0/0:16,0:16:45:0,45,675 0/0:11,0:11:33:0,33,353 0/0:8,0:8:21:0,21,315 0/0:10,0:10:21:0,21,315 0/0:14,0:14:36:0,36,540 0/0:14,0:14:30:0,30,450 0/0:17,0:17:33:0,33,495 0/0:19,0:19:51:0,51,765 0/0:23,0:23:57:0,57,855 0/0:9,0:9:24:0,24,360 0/0:10,0:10:30:0,30,355 0/0:10,0:10:30:0,30,365 0/0:14,0:14:39:0,39,585 0/0:12,0:12:30:0,30,450 0/0:19,0:19:48:0,48,720 ./.:0,0:0 0/0:21,0:21:54:0,54,810 0/0:27,0:27:63:0,63,945 0/0:29,0:29:63:0,63,945 0/0:7,0:7:18:0,18,270 0/0:13,0:13:21:0,21,315 0/0:16,0:16:42:0,42,630 0/0:16,0:16:45:0,45,675 0/0:12,0:12:30:0,30,450 0/0:11,0:11:0:0,0,307 0/0:7,0:7:21:0,21,223 0/0:13,0:13:30:0,30,450 0/0:11,0:11:27:0,27,405 0/0:9,0:9:18:0,18,270 0/0:6,0:6:15:0,15,225 0/0:12,0:12:27:0,27,405 0/0:14,0:14:39:0,39,585 0/0:11,0:11:33:0,33,374 0/0:12,0:12:36:0,36,413 0/0:20,0:20:51:0,51,765 0/0:21,0:21:60:0,60,900 0/0:13,0:13:30:0,30,450 0/0:10,0:10:24:0,24,360 0/0:40,0:40:99:0,102,1530 0/0:18,0:18:54:0,54,615 0/0:10,0:10:24:0,24,360 0/0:25,0:25:60:0,60,900 0/0:13,0:13:30:0,30,450 0/0:19,0:19:51:0,51,765 0/0:16,0:16:36:0,36,540 0/0:7,0:7:15:0,15,225 0/0:42,0:42:99:0,102,1342 0/0:18,0:18:42:0,42,630 0/0:13,0:13:39:0,39,499 0/0:7,0:7:21:0,21,232 0/0:5,0:5:15:0,15,164 0/0:18,0:18:48:0,48,720 0/0:23,0:23:66:0,66,990 0/0:8,0:8:18:0,18,270 0/0:6,0:6:18:0,18,200 0/0:19,0:19:33:0,33,495 0/0:22,0:22:60:0,60,900 0/0:8,0:8:0:0,0,212 0/0:10,0:10:30:0,30,336 0/0:8,0:8:24:0,24,301 ./.:0,0:0 1 36397017 . C G 636.76 . AC=2;AF=0.010;AN=200;BaseQRankSum=0.377;ClippingRankSum=-4.770e-01;DP=2617;FS=10.072;InbreedingCoeff=-0.0105;MLEAC=2;MLEAF=0.010;MQ=60.00;MQRankSum=-2.760e-01;QD=12.01;ReadPosRankSum=0.979;SOR=0.103 GT:AD:DP:GQ:PL 0/0:31,0:31:90:0,90,1175 0/0:36,0:36:99:0,102,1530 0/0:37,0:37:99:0,99,1444 0/0:34,0:34:87:0,87,1305 0/0:30,0:30:57:0,57,855 0/0:40,0:40:99:0,99,1485 0/1:17,10:27:99:287,0,520 0/0:16,0:16:39:0,39,585 0/0:37,0:37:99:0,99,1485 0/0:19,0:19:51:0,51,765 0/0:21,0:21:60:0,60,687 0/0:16,0:16:48:0,48,576 0/0:7,0:7:18:0,18,270 0/0:21,0:21:54:0,54,810 0/0:20,0:20:48:0,48,720 0/0:22,0:22:60:0,60,900 0/0:21,0:21:60:0,60,800 0/0:33,0:33:90:0,90,1350 0/0:36,0:36:90:0,90,1350 0/0:20,0:20:57:0,57,855 0/0:31,0:31:72:0,72,1080 0/0:39,0:39:99:0,102,1530 0/0:11,0:11:30:0,30,450 0/0:39,0:39:99:0,99,1485 0/0:23,0:23:57:0,57,855 0/0:30,0:30:87:0,87,1305 0/0:22,0:22:48:0,48,720 0/0:39,0:39:99:0,99,1485 0/0:13,0:13:36:0,36,540 0/0:26,0:26:75:0,75,1125 0/0:16,0:16:45:0,45,675 0/0:24,0:24:57:0,57,855 0/0:17,0:17:42:0,42,630 0/0:17,0:17:45:0,45,675 0/0:30,0:30:72:0,72,1080 0/0:37,0:37:99:0,99,1485 0/0:26,0:26:60:0,60,900 0/0:19,0:19:39:0,39,585 0/0:15,0:15:42:0,42,630 0/1:13,13:26:99:409,0,419 0/0:13,0:13:30:0,30,450 0/0:16,0:16:45:0,45,675 0/0:30,0:30:63:0,63,945 0/0:15,0:15:36:0,36,540 0/0:23,0:23:48:0,48,720 0/0:38,0:38:99:0,99,1485 0/0:39,0:39:99:0,102,1530 0/0:41,0:41:99:0,99,1485 0/0:34,0:34:78:0,78,1170 0/0:13,0:13:33:0,33,495 0/0:17,0:17:51:0,51,638 0/0:21,0:21:57:0,57,855 0/0:34,0:34:90:0,90,1350 0/0:34,0:34:81:0,81,1215 0/0:19,0:19:48:0,48,720 0/0:6,0:6:15:0,15,225 0/0:45,0:45:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:20,0:20:54:0,54,810 0/0:20,0:20:48:0,48,720 0/0:40,0:40:99:0,99,1485 0/0:25,0:25:63:0,63,945 0/0:27,0:27:66:0,66,990 0/0:22,0:22:57:0,57,855 0/0:21,0:21:54:0,54,810 0/0:29,0:29:81:0,81,1215 0/0:21,0:21:60:0,60,900 0/0:18,0:18:51:0,51,765 0/0:25,0:25:60:0,60,900 0/0:20,0:20:45:0,45,675 0/0:25,0:25:63:0,63,945 0/0:25,0:25:57:0,57,855 0/0:30,0:30:81:0,81,1215 0/0:29,0:29:72:0,72,1080 0/0:36,0:36:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:14,0:14:33:0,33,495 0/0:40,0:40:99:0,102,1530 0/0:43,0:43:96:0,96,1440 0/0:22,0:22:60:0,60,880 0/0:44,0:44:99:0,102,1530 0/0:30,0:30:70:0,70,1028 0/0:34,0:34:81:0,81,1215 0/0:24,0:24:60:0,60,900 0/0:8,0:8:18:0,18,270 0/0:42,0:42:99:0,102,1342 0/0:33,0:33:99:0,99,1246 0/0:36,0:36:68:0,68,1271 0/0:18,0:18:48:0,48,720 0/0:15,0:15:45:0,45,559 0/0:29,0:29:72:0,72,1080 0/0:47,0:47:99:0,102,1530 0/0:24,0:24:60:0,60,900 0/0:6,0:6:18:0,18,205 0/0:31,0:31:81:0,81,1215 0/0:36,0:36:99:0,99,1485 0/0:18,0:18:48:0,48,720 0/0:18,0:18:54:0,54,688 0/0:16,0:16:39:0,39,585 0/0:10,0:10:30:0,30,325 1 36410978 . A G 99.26 . AC=2;AF=0.010;AN=198;DP=593;FS=0.000;InbreedingCoeff=0.1310;MLEAC=1;MLEAF=5.051e-03;MQ=60.00;QD=24.82;SOR=3.258 GT:AD:DP:GQ:PL 0/0:2,0:2:6:0,6,73 0/0:8,0:8:24:0,24,303 0/0:11,0:11:30:0,30,450 0/0:1,0:1:3:0,3,33 0/0:7,0:7:21:0,21,263 0/0:10,0:10:30:0,30,344 0/0:6,0:6:18:0,18,216 0/0:5,0:5:0:0,0,125 0/0:9,0:9:21:0,21,315 0/0:1,0:1:3:0,3,33 0/0:3,0:3:9:0,9,92 0/0:4,0:4:12:0,12,149 ./.:0,0:0 0/0:7,0:7:21:0,21,265 0/0:3,0:3:6:0,6,90 0/0:8,0:8:18:0,18,270 0/0:3,0:3:6:0,6,90 0/0:5,0:5:15:0,15,203 0/0:8,0:8:24:0,24,292 0/0:2,0:2:6:0,6,55 0/0:8,0:8:21:0,21,315 0/0:12,0:12:30:0,30,450 0/0:4,0:4:12:0,12,141 0/0:15,0:15:36:0,36,540 0/0:1,0:1:3:0,3,28 0/0:1,0:1:3:0,3,29 0/0:4,0:4:12:0,12,116 0/0:7,0:7:21:0,21,247 0/0:7,0:7:21:0,21,260 0/0:10,0:10:30:0,30,345 0/0:4,0:4:12:0,12,139 0/0:5,0:5:15:0,15,183 0/0:5,0:5:12:0,12,180 1/1:0,4:4:12:152,12,0 0/0:9,0:9:27:0,27,330 0/0:12,0:12:33:0,33,495 0/0:7,0:7:21:0,21,260 0/0:10,0:10:27:0,27,405 0/0:3,0:3:9:0,9,109 0/0:8,0:8:24:0,24,285 0/0:4,0:4:12:0,12,132 0/0:3,0:3:9:0,9,109 0/0:4,0:4:6:0,6,90 0/0:4,0:4:12:0,12,144 0/0:4,0:4:9:0,9,135 0/0:8,0:8:24:0,24,285 0/0:2,0:2:6:0,6,70 0/0:12,0:12:36:0,36,421 0/0:5,0:5:15:0,15,180 0/0:5,0:5:15:0,15,178 0/0:6,0:6:18:0,18,216 0/0:1,0:1:3:0,3,36 0/0:5,0:5:15:0,15,185 0/0:7,0:7:18:0,18,270 0/0:3,0:3:6:0,6,90 0/0:1,0:1:3:0,3,30 0/0:6,0:6:15:0,15,225 0/0:12,0:12:36:0,36,407 0/0:6,0:6:18:0,18,209 0/0:4,0:4:12:0,12,126 0/0:8,0:8:18:0,18,270 0/0:7,0:7:21:0,21,257 0/0:3,0:3:9:0,9,108 0/0:2,0:2:6:0,6,76 0/0:4,0:4:12:0,12,98 0/0:3,0:3:9:0,9,111 0/0:3,0:3:9:0,9,108 0/0:8,0:8:18:0,18,270 0/0:7,0:7:0:0,0,173 0/0:2,0:2:6:0,6,71 0/0:7,0:7:21:0,21,259 0/0:4,0:4:12:0,12,145 0/0:3,0:3:6:0,6,90 0/0:7,0:7:21:0,21,272 0/0:10,0:10:27:0,27,405 0/0:16,0:16:39:0,39,585 0/0:8,0:8:24:0,24,294 0/0:18,0:18:54:0,54,628 0/0:11,0:11:21:0,21,315 0/0:7,0:7:21:0,21,252 0/0:7,0:7:18:0,18,270 0/0:5,0:5:15:0,15,168 0/0:7,0:7:21:0,21,277 0/0:2,0:2:3:0,3,45 0/0:1,0:1:3:0,3,29 0/0:14,0:14:39:0,39,585 0/0:9,0:9:27:0,27,306 0/0:11,0:11:30:0,30,450 0/0:6,0:6:18:0,18,215 0/0:4,0:4:6:0,6,90 0/0:3,0:3:6:0,6,90 0/0:8,0:8:24:0,24,278 0/0:2,0:2:6:0,6,71 0/0:1,0:1:3:0,3,27 0/0:7,0:7:21:0,21,253 0/0:8,0:8:21:0,21,315 0/0:7,0:7:18:0,18,270 0/0:4,0:4:12:0,12,145 0/0:4,0:4:12:0,12,146 0/0:4,0:4:12:0,12,101 1 36411165 rs371887788 A G 557.74 . AC=1;AF=5.000e-03;AN=200;BaseQRankSum=1.99;ClippingRankSum=-7.360e-01;DB;DP=3603;FS=4.844;InbreedingCoeff=-0.0061;MLEAC=1;MLEAF=5.000e-03;MQ=58.57;MQRankSum=0.437;QD=11.87;ReadPosRankSum=-4.370e-01;SOR=0.148 GT:AD:DP:GQ:PL 0/0:39,0:39:99:0,99,1485 0/0:42,0:42:99:0,105,1533 0/0:43,0:43:99:0,105,1524 0/0:39,0:39:99:0,99,1485 0/0:35,0:35:99:0,99,1481 0/0:45,0:45:99:0,108,1620 0/0:38,0:38:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:35,0:35:99:0,99,1464 0/0:38,0:38:99:0,108,1620 0/0:34,0:34:81:0,81,1215 0/0:15,0:15:36:0,36,540 0/0:11,0:11:33:0,33,393 0/0:27,0:27:57:0,57,855 0/0:39,0:39:99:0,108,1620 0/0:39,0:39:99:0,99,1449 0/0:36,0:36:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:40,0:40:99:0,102,1530 0/0:22,0:22:45:0,45,675 0/0:45,0:45:99:0,102,1530 0/0:37,0:37:99:0,99,1485 0/0:28,0:28:81:0,81,1215 0/0:39,0:39:99:0,99,1485 0/0:35,0:35:87:0,87,1305 0/0:34,0:34:81:0,81,1179 0/0:36,0:36:99:0,99,1485 0/0:33,0:33:90:0,90,1350 0/0:38,0:38:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:22,0:22:60:0,60,900 0/0:43,0:43:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:23,0:23:51:0,51,765 0/0:46,0:46:99:0,99,1485 0/0:38,0:38:99:0,99,1459 0/0:28,0:28:72:0,72,1080 0/0:38,0:38:99:0,99,1485 0/0:37,0:37:90:0,90,1334 0/0:37,0:37:99:0,99,1443 0/0:26,0:26:60:0,60,900 0/0:29,0:29:72:0,72,1080 0/0:34,0:34:90:0,90,1350 0/0:26,0:26:57:0,57,855 0/0:36,0:36:99:0,102,1530 0/0:44,0:44:99:0,102,1530 0/0:45,0:45:99:0,99,1485 0/0:47,0:47:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:24,0:24:57:0,57,855 0/0:40,0:40:99:0,102,1530 0/0:27,0:27:72:0,72,1080 0/0:41,0:41:99:0,99,1485 0/0:34,0:34:99:0,99,1485 0/0:45,0:45:99:0,105,1575 0/0:6,0:6:18:0,18,196 0/0:37,0:37:99:0,99,1393 0/0:36,0:36:99:0,99,1367 0/0:29,0:29:75:0,75,1125 0/0:37,0:37:78:0,78,1170 0/0:38,0:38:99:0,105,1445 0/0:41,0:41:99:0,102,1530 0/0:40,0:40:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:36,0:36:90:0,90,1286 0/0:37,0:37:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:39,0:39:90:0,90,1350 0/0:22,0:22:60:0,60,900 0/0:41,0:41:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:46,0:46:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:39,0:39:99:0,102,1423 0/0:41,0:41:99:0,102,1486 0/0:38,0:38:90:0,90,1350 0/0:37,0:37:99:0,99,1485 0/0:45,0:45:99:0,100,1416 0/0:42,0:42:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:41,0:41:99:0,102,1530 0/0:38,0:38:99:0,99,1485 0/0:40,0:40:90:0,90,1350 0/0:12,0:12:27:0,27,405 0/0:42,0:42:99:0,105,1575 0/0:39,0:39:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:28,0:28:72:0,72,1080 0/0:29,0:29:72:0,72,1080 0/0:40,0:40:99:0,99,1485 0/0:41,0:41:99:0,99,1485 0/0:40,0:40:93:0,93,1395 0/0:2,0:2:6:0,6,73 0/1:25,22:47:99:600,0,731 0/0:37,0:37:99:0,99,1400 0/0:38,0:38:96:0,96,1440 0/0:36,0:36:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:47,0:47:99:0,112,1710 1 36411694 rs79054898 G A 147.84 . AC=1;AF=5.208e-03;AN=192;BaseQRankSum=-2.383e+00;ClippingRankSum=0.365;DB;DP=779;FS=0.000;InbreedingCoeff=-0.0439;MLEAC=1;MLEAF=5.208e-03;MQ=59.08;MQRankSum=-3.650e-01;QD=14.78;ReadPosRankSum=-6.330e-01;SOR=1.085 GT:AD:DP:GQ:PL 0/0:2,0:2:6:0,6,72 0/0:4,0:4:3:0,3,45 0/0:16,0:16:36:0,36,540 0/0:7,0:7:21:0,21,241 0/0:6,0:6:0:0,0,154 0/0:14,0:14:18:0,18,270 0/0:5,0:5:15:0,15,190 0/0:5,0:5:15:0,15,187 0/0:9,0:9:24:0,24,360 0/0:7,0:7:0:0,0,112 0/0:5,0:5:0:0,0,136 0/0:5,0:5:15:0,15,189 ./.:0,0:0 0/0:2,0:2:6:0,6,76 0/0:10,0:10:21:0,21,315 0/0:12,0:12:27:0,27,405 0/0:7,0:7:15:0,15,225 0/0:5,0:5:9:0,9,135 0/0:11,0:11:30:0,30,450 0/0:1,0:1:3:0,3,33 0/0:10,0:10:24:0,24,360 0/0:13,0:13:27:0,27,405 0/0:3,0:3:9:0,9,111 0/0:20,0:20:45:0,45,675 0/0:8,0:8:18:0,18,270 0/0:2,0:2:6:0,6,59 0/0:4,0:4:12:0,12,148 0/0:5,0:5:15:0,15,182 ./.:0,0:0 0/0:12,0:12:24:0,24,360 0/0:4,0:4:12:0,12,136 0/0:8,0:8:15:0,15,225 0/0:6,0:6:18:0,18,220 0/0:5,0:5:12:0,12,180 0/0:6,0:6:18:0,18,211 0/0:19,0:19:36:0,36,540 0/0:9,0:9:24:0,24,360 0/0:9,0:9:18:0,18,270 0/0:8,0:8:9:0,9,135 0/0:4,0:4:12:0,12,148 0/0:3,0:3:9:0,9,99 0/0:4,0:4:9:0,9,135 0/1:4,6:10:99:189,0,126 0/0:2,0:2:6:0,6,74 0/0:7,0:7:15:0,15,225 0/0:10,0:10:18:0,18,270 0/0:6,0:6:9:0,9,135 0/0:15,0:15:17:0,17,479 0/0:8,0:8:21:0,21,315 0/0:3,0:3:6:0,6,90 0/0:6,0:6:6:0,6,90 0/0:8,0:8:12:0,12,180 0/0:6,0:6:15:0,15,225 0/0:11,0:11:30:0,30,450 0/0:14,0:14:30:0,30,450 ./.:0,0:0 0/0:5,0:5:15:0,15,185 0/0:15,0:15:36:0,36,540 0/0:6,0:6:18:0,18,225 0/0:8,0:8:24:0,24,300 0/0:18,0:18:36:0,36,540 0/0:4,0:4:9:0,9,135 0/0:7,0:7:18:0,18,270 0/0:4,0:4:3:0,3,45 0/0:4,0:4:9:0,9,135 0/0:6,0:6:15:0,15,225 0/0:9,0:9:24:0,24,360 0/0:8,0:8:21:0,21,315 0/0:6,0:6:6:0,6,90 0/0:9,0:9:24:0,24,360 0/0:15,0:15:33:0,33,495 0/0:7,0:7:18:0,18,270 0/0:12,0:12:30:0,30,450 0/0:12,0:12:21:0,21,315 0/0:10,0:10:27:0,27,405 0/0:14,0:14:33:0,33,495 0/0:5,0:5:12:0,12,180 0/0:25,0:25:57:0,57,855 0/0:14,0:14:30:0,30,450 0/0:9,0:9:21:0,21,315 0/0:6,0:6:18:0,18,218 0/0:6,0:6:18:0,18,223 0/0:5,0:5:12:0,12,180 0/0:2,0:2:6:0,6,73 0/0:3,0:3:6:0,6,90 0/0:29,0:29:51:0,51,765 0/0:8,0:8:24:0,24,292 0/0:11,0:11:18:0,18,270 0/0:2,0:2:3:0,3,45 0/0:4,0:4:12:0,12,148 0/0:4,0:4:12:0,12,150 0/0:13,0:13:30:0,30,450 0/0:9,0:9:21:0,21,315 ./.:0,0:0 0/0:6,0:6:9:0,9,135 0/0:11,0:11:15:0,15,225 0/0:2,0:2:6:0,6,49 0/0:5,0:5:12:0,12,180 0/0:8,0:8:21:0,21,315 0/0:12,0:12:30:0,30,450 1 36411737 rs6665591 A G 208.82 . AC=2;AF=0.013;AN=158;BaseQRankSum=1.65;ClippingRankSum=-7.200e-01;DB;DP=308;FS=0.000;InbreedingCoeff=-0.1142;MLEAC=2;MLEAF=0.013;MQ=60.00;MQRankSum=1.16;QD=13.92;ReadPosRankSum=-3.610e-01;SOR=0.818 GT:AD:DP:GQ:PL 0/0:1,0:1:3:0,3,35 0/0:3,0:3:6:0,6,90 0/0:4,0:4:0:0,0,70 0/0:2,0:2:6:0,6,75 0/0:5,0:5:12:0,12,180 0/1:5,4:9:99:130,0,156 0/0:4,0:4:9:0,9,135 0/0:1,0:1:3:0,3,30 0/0:5,0:5:9:0,9,135 0/0:5,0:5:9:0,9,135 0/0:3,0:3:9:0,9,104 ./.:0,0:0 ./.:0,0:0 0/0:4,0:4:12:0,12,149 0/0:1,0:1:3:0,3,34 0/0:4,0:4:0:0,0,89 0/0:2,0:2:6:0,6,75 0/0:3,0:3:9:0,9,114 0/0:6,0:6:15:0,15,225 0/0:2,0:2:6:0,6,74 0/0:4,0:4:9:0,9,135 0/0:5,0:5:12:0,12,180 0/0:2,0:2:6:0,6,73 0/0:12,0:12:30:0,30,450 ./.:0,0:0 ./.:0,0:0 0/0:1,0:1:3:0,3,35 0/0:1,0:1:3:0,3,27 0/0:2,0:2:6:0,6,63 ./.:0,0:0 ./.:0,0:0 0/0:3,0:3:9:0,9,112 ./.:0,0:0 0/0:1,0:1:3:0,3,34 0/0:3,0:3:9:0,9,102 0/0:6,0:6:18:0,18,228 ./.:0,0:0 0/0:4,0:4:9:0,9,135 ./.:2,0:2 0/0:6,0:6:18:0,18,235 0/0:3,0:3:9:0,9,98 0/0:1,0:1:3:0,3,38 0/0:2,0:2:6:0,6,74 0/0:3,0:3:9:0,9,112 ./.:1,0:1 0/0:2,0:2:3:0,3,45 0/0:3,0:3:9:0,9,107 0/0:2,0:2:3:0,3,45 0/0:2,0:2:6:0,6,71 ./.:0,0:0 0/0:4,0:4:12:0,12,145 0/0:3,0:3:9:0,9,106 ./.:0,0:0 ./.:5,0:5 0/0:3,0:3:9:0,9,105 ./.:0,0:0 0/0:1,0:1:3:0,3,38 0/0:8,0:8:18:0,18,270 ./.:0,0:0 0/0:7,0:7:12:0,12,180 0/0:4,0:4:9:0,9,135 0/0:3,0:3:9:0,9,101 ./.:0,0:0 0/0:4,0:4:12:0,12,159 0/0:4,0:4:12:0,12,147 0/0:6,0:6:15:0,15,225 0/0:2,0:2:6:0,6,81 0/0:3,0:3:3:0,3,45 ./.:0,0:0 ./.:0,0:0 0/0:3,0:3:0:0,0,44 0/0:1,0:1:3:0,3,37 0/0:2,0:2:6:0,6,75 0/0:6,0:6:18:0,18,215 0/0:4,0:4:9:0,9,135 0/1:2,4:6:57:132,0,57 0/0:3,0:3:6:0,6,90 0/0:13,0:13:27:0,27,405 0/0:6,0:6:18:0,18,212 0/0:5,0:5:6:0,6,90 0/0:5,0:5:12:0,12,180 0/0:4,0:4:12:0,12,108 0/0:7,0:7:0:0,0,39 ./.:3,0:3 0/0:1,0:1:3:0,3,39 0/0:9,0:9:18:0,18,270 0/0:5,0:5:12:0,12,180 0/0:3,0:3:9:0,9,114 0/0:6,0:6:0:0,0,79 0/0:1,0:1:3:0,3,38 0/0:4,0:4:0:0,0,70 0/0:3,0:3:9:0,9,96 0/0:1,0:1:3:0,3,38 ./.:0,0:0 0/0:3,0:3:9:0,9,111 0/0:4,0:4:9:0,9,135 0/0:3,0:3:6:0,6,90 0/0:2,0:2:6:0,6,74 0/0:1,0:1:3:0,3,37 ./.:2,0:2 1 36432483 . A G 582.83 . AC=1;AF=5.000e-03;AN=200;BaseQRankSum=3.49;ClippingRankSum=-7.300e-02;DP=3567;FS=2.174;InbreedingCoeff=-0.0081;MLEAC=1;MLEAF=5.000e-03;MQ=58.25;MQRankSum=-9.790e-01;QD=15.34;ReadPosRankSum=0.102;SOR=0.223 GT:AD:DP:GQ:PL 0/0:32,0:32:81:0,81,1215 0/0:41,0:41:99:0,99,1485 0/0:41,0:41:99:0,102,1512 0/0:45,0:45:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:39,0:39:99:0,102,1530 0/0:30,0:30:81:0,81,1215 0/0:39,0:39:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:43,0:43:99:0,99,1462 0/0:30,0:30:78:0,78,1170 0/0:29,0:29:72:0,72,1080 0/0:6,0:6:18:0,18,232 0/0:38,0:38:99:0,99,1485 0/0:44,0:44:99:0,105,1575 0/0:44,0:44:99:0,99,1485 0/0:40,0:40:99:0,102,1530 0/0:43,0:43:99:0,99,1485 0/0:37,0:37:99:0,99,1485 0/0:9,0:9:27:0,27,300 0/0:42,0:42:99:0,104,1575 0/0:43,0:43:99:0,102,1530 0/0:31,0:31:78:0,78,1170 0/0:38,0:38:99:0,99,1485 0/0:30,0:30:63:0,63,945 0/0:1,0:1:3:0,3,29 0/0:34,0:34:86:0,86,1179 0/0:34,0:34:84:0,84,1260 0/0:37,0:37:81:0,81,1215 0/0:33,0:33:99:0,99,1240 0/0:24,0:24:51:0,51,765 0/0:42,0:42:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:25,0:25:60:0,60,900 0/0:43,0:43:99:0,102,1530 0/0:36,0:36:99:0,102,1530 0/0:40,0:40:99:0,99,1485 0/0:36,0:36:99:0,99,1485 0/0:42,0:42:99:0,105,1575 0/0:36,0:36:90:0,90,1350 0/0:23,0:23:60:0,60,900 0/0:22,0:22:51:0,51,765 0/0:29,0:29:81:0,81,1215 0/0:24,0:24:60:0,60,900 0/0:42,0:42:99:0,102,1530 0/0:41,0:41:99:0,99,1485 0/0:43,0:43:99:0,102,1530 0/0:47,0:47:99:0,105,1575 0/0:37,0:37:99:0,102,1530 0/0:28,0:28:60:0,60,900 0/0:36,0:36:99:0,99,1428 0/0:36,0:36:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:32,0:32:81:0,81,1168 0/0:30,0:30:84:0,84,1260 0/0:1,0:1:3:0,3,30 0/0:42,0:42:99:0,114,1710 0/0:38,0:38:99:0,99,1485 0/0:25,0:25:63:0,63,945 0/0:31,0:31:66:0,66,990 0/0:56,0:56:99:0,120,1800 0/0:43,0:43:99:0,102,1530 0/0:42,0:42:99:0,99,1485 0/0:38,0:38:99:0,102,1530 0/0:45,0:45:93:0,93,1395 0/0:42,0:42:99:0,99,1485 0/0:37,0:37:99:0,99,1483 0/0:33,0:33:99:0,99,1269 0/0:40,0:40:99:0,99,1485 0/0:28,0:28:71:0,71,996 0/0:44,0:44:99:0,102,1530 0/0:38,0:38:96:0,96,1440 0/0:40,0:40:99:0,102,1530 0/0:47,0:47:99:0,105,1575 0/0:37,0:37:99:0,99,1485 0/0:40,0:40:99:0,105,1575 0/0:44,0:44:99:0,99,1485 0/0:49,0:49:99:0,114,1710 0/0:39,0:39:99:0,99,1485 0/0:46,0:46:99:0,102,1530 0/0:37,0:37:90:0,90,1350 0/0:41,0:41:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:5,0:5:15:0,15,191 0/0:44,0:44:99:0,99,1431 0/0:40,0:40:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:30,0:30:81:0,81,1215 0/0:31,0:31:81:0,81,1215 0/0:40,0:40:99:0,99,1485 0/0:35,0:35:99:0,99,1485 0/0:37,0:37:90:0,90,1350 0/0:2,0:2:6:0,6,74 0/1:18,20:38:99:625,0,544 0/0:37,0:37:99:0,102,1507 0/0:32,0:32:72:0,72,1080 0/0:32,0:32:81:0,81,1215 0/0:44,0:44:99:0,102,1530 0/0:39,0:39:99:0,99,1078 1 36432506 rs72661637 A G 9336.81 . AC=9;AF=0.045;AN=198;BaseQRankSum=2.94;ClippingRankSum=-8.040e-01;DB;DP=3995;FS=2.881;InbreedingCoeff=0.1702;MLEAC=9;MLEAF=0.045;MQ=58.31;MQRankSum=-6.350e-01;QD=16.58;ReadPosRankSum=0.306;SOR=0.960 GT:AD:DP:GQ:PL 0/0:42,0:42:99:0,102,1530 0/0:41,0:41:99:0,99,1485 0/1:64,46:110:99:1425,0,1948 0/0:45,0:45:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:39,0:39:99:0,102,1530 0/0:37,0:37:99:0,99,1485 0/0:39,0:39:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:43,0:43:99:0,99,1462 0/0:42,0:42:99:0,99,1485 0/0:35,0:35:81:0,81,1215 0/0:4,0:4:12:0,12,153 0/0:42,0:42:93:0,93,1395 0/0:44,0:44:99:0,99,1485 0/0:44,0:44:99:0,99,1485 0/0:40,0:40:99:0,102,1530 0/0:43,0:43:99:0,99,1485 0/0:37,0:37:99:0,99,1485 0/0:9,0:9:9:0,9,135 0/0:42,0:42:99:0,104,1575 0/0:43,0:43:99:0,102,1530 0/0:32,0:32:72:0,72,1080 0/0:38,0:38:99:0,99,1485 0/0:40,0:40:90:0,90,1350 0/0:6,0:6:18:0,18,170 0/0:41,0:41:96:0,96,1440 0/0:43,0:43:99:0,99,1485 0/0:28,0:28:63:0,63,945 0/0:33,0:33:99:0,99,1240 0/0:30,0:30:72:0,72,1080 0/0:42,0:42:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:28,0:28:60:0,60,900 0/0:43,0:43:99:0,102,1530 0/0:36,0:36:99:0,102,1530 0/0:41,0:41:99:0,99,1485 0/0:48,0:48:99:0,99,1485 0/0:42,0:42:99:0,105,1575 0/0:34,0:34:81:0,81,1215 0/0:29,0:29:72:0,72,1080 1/1:0,24:24:72:910,72,0 0/0:25,0:25:75:0,75,923 0/0:24,0:24:60:0,60,900 0/0:36,0:36:90:0,90,1350 0/0:41,0:41:99:0,99,1485 0/0:43,0:43:99:0,102,1530 0/0:47,0:47:99:0,105,1575 0/0:37,0:37:99:0,102,1530 0/1:16,17:33:99:578,0,487 0/0:36,0:36:99:0,99,1428 0/0:36,0:36:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:41,0:41:99:0,102,1530 0/0:41,0:41:99:0,99,1485 0/0:1,0:1:3:0,3,30 0/1:56,35:91:99:1015,0,1768 0/0:38,0:38:99:0,99,1485 0/0:28,0:28:60:0,60,900 0/0:44,0:44:99:0,108,1665 0/1:14,60:74:99:2000,0,308 0/0:43,0:43:99:0,102,1530 0/0:42,0:42:99:0,99,1485 0/0:38,0:38:99:0,102,1530 0/0:44,0:44:99:0,99,1485 0/1:35,24:59:99:796,0,1127 0/0:37,0:37:99:0,99,1483 0/0:41,0:41:90:0,90,1350 0/0:40,0:40:99:0,99,1485 0/0:37,0:37:90:0,90,1350 0/0:44,0:44:99:0,102,1530 0/0:43,0:43:99:0,102,1530 0/0:40,0:40:99:0,102,1530 0/0:47,0:47:99:0,105,1575 0/1:47,52:99:99:1697,0,1384 0/0:40,0:40:99:0,105,1575 0/0:44,0:44:99:0,99,1485 0/0:49,0:49:99:0,114,1710 0/0:39,0:39:99:0,99,1485 0/0:46,0:46:99:0,102,1530 0/0:39,0:39:93:0,93,1395 0/1:38,35:73:99:1067,0,1165 0/0:42,0:42:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:8,0:8:24:0,24,287 0/0:44,0:44:99:0,99,1431 0/0:40,0:40:99:0,99,1485 0/0:42,0:42:99:0,99,1485 0/0:26,0:26:60:0,60,900 0/0:41,0:41:99:0,99,1485 0/0:40,0:40:99:0,99,1485 0/0:35,0:35:99:0,99,1485 0/0:42,0:42:99:0,99,1485 ./.:2,0:2 0/0:43,0:43:99:0,102,1530 0/0:37,0:37:99:0,102,1507 0/0:39,0:39:96:0,96,1440 0/0:44,0:44:99:0,99,1485 0/0:44,0:44:99:0,102,1530 0/0:39,0:39:99:0,99,1078 1 36432805 rs193002193 T C 190.92 . AC=1;AF=5.051e-03;AN=198;BaseQRankSum=1.37;ClippingRankSum=0.234;DB;DP=2919;FS=0.000;InbreedingCoeff=-0.0111;MLEAC=1;MLEAF=5.051e-03;MQ=60.00;MQRankSum=1.13;QD=5.62;ReadPosRankSum=-2.342e+00;SOR=0.138 GT:AD:DP:GQ:PL 0/0:31,0:31:72:0,72,1080 0/0:41,0:41:99:0,99,1485 0/0:45,0:45:99:0,102,1530 0/0:34,0:34:90:0,90,1350 0/0:35,0:35:81:0,81,1215 0/0:39,0:39:99:0,102,1530 0/0:20,0:20:39:0,39,585 0/0:29,0:29:81:0,81,1215 0/0:35,0:35:72:0,72,1080 0/0:43,0:43:99:0,99,1462 0/0:17,0:17:36:0,36,540 0/0:15,0:15:33:0,33,495 0/0:2,0:2:6:0,6,74 0/0:26,0:26:63:0,63,945 0/0:26,0:26:51:0,51,765 0/0:35,0:35:81:0,81,1215 0/0:22,0:22:31:0,31,723 0/0:29,0:29:57:0,57,855 0/0:37,0:37:99:0,99,1485 0/0:5,0:5:15:0,15,183 0/0:46,0:46:90:0,90,1350 0/0:43,0:43:99:0,102,1530 0/0:24,0:24:42:0,42,630 0/0:38,0:38:99:0,99,1485 0/0:22,0:22:51:0,51,765 ./.:0,0:0 0/0:17,0:17:36:0,36,540 0/0:25,0:25:54:0,54,810 0/0:31,0:31:81:0,81,1215 0/0:14,0:14:33:0,33,495 0/0:19,0:19:45:0,45,675 0/0:17,0:17:33:0,33,495 0/0:27,0:27:63:0,63,945 0/0:25,0:25:60:0,60,900 0/0:30,0:30:72:0,72,1080 0/0:36,0:36:99:0,102,1530 0/0:34,0:34:72:0,72,1080 0/0:29,0:29:66:0,66,990 0/0:25,0:25:60:0,60,900 0/0:23,0:23:51:0,51,765 0/0:19,0:19:51:0,51,765 0/0:9,0:9:18:0,18,270 0/0:31,0:31:84:0,84,1194 0/0:23,0:23:54:0,54,810 0/0:21,0:21:42:0,42,630 0/0:41,0:41:99:0,99,1485 0/0:35,0:35:81:0,81,1215 0/0:47,0:47:99:0,105,1575 0/0:38,0:38:90:0,90,1350 0/0:19,0:19:54:0,54,810 0/0:21,0:21:57:0,57,855 0/0:25,0:25:60:0,60,900 0/1:25,9:34:99:233,0,835 0/0:21,0:21:51:0,51,765 0/0:42,0:42:99:0,100,1710 0/0:1,0:1:3:0,3,33 0/0:69,0:69:99:0,120,1800 0/0:38,0:38:99:0,99,1485 0/0:19,0:19:30:0,30,450 0/0:27,0:27:57:0,57,855 0/0:42,0:42:99:0,105,1575 0/0:27,0:27:60:0,60,900 0/0:31,0:31:72:0,72,1080 0/0:25,0:25:57:0,57,855 0/0:28,0:28:60:0,60,900 0/0:32,0:32:81:0,81,1215 0/0:27,0:27:60:0,60,900 0/0:25,0:25:54:0,54,810 0/0:29,0:29:72:0,72,1080 0/0:33,0:33:72:0,72,1080 0/0:30,0:30:60:0,60,900 0/0:24,0:24:60:0,60,900 0/0:40,0:40:99:0,102,1530 0/0:47,0:47:99:0,105,1575 0/0:49,0:49:99:0,99,1485 0/0:40,0:40:99:0,105,1575 0/0:44,0:44:99:0,99,1485 0/0:49,0:49:99:0,114,1710 0/0:39,0:39:99:0,99,1485 0/0:25,0:25:60:0,60,900 0/0:21,0:21:54:0,54,810 0/0:46,0:46:99:0,102,1530 0/0:29,0:29:57:0,57,855 0/0:28,0:28:75:0,75,1125 0/0:5,0:5:3:0,3,45 0/0:44,0:44:99:0,99,1431 0/0:40,0:40:99:0,99,1485 0/0:35,0:35:81:0,81,1215 0/0:18,0:18:42:0,42,630 0/0:17,0:17:39:0,39,585 0/0:31,0:31:72:0,72,1080 0/0:35,0:35:99:0,99,1485 0/0:25,0:25:54:0,54,810 0/0:1,0:1:3:0,3,37 0/0:23,0:23:57:0,57,855 0/0:37,0:37:99:0,102,1507 0/0:33,0:33:72:0,72,1080 0/0:26,0:26:63:0,63,945 0/0:29,0:29:72:0,72,1080 0/0:39,0:39:99:0,102,1530 1 36437991 rs12096413 G A 699.06 . AC=2;AF=0.010;AN=196;BaseQRankSum=-3.800e-01;ClippingRankSum=0.054;DB;DP=2881;FS=0.000;InbreedingCoeff=-0.0141;MLEAC=2;MLEAF=0.010;MQ=60.00;MQRankSum=1.31;QD=16.26;ReadPosRankSum=0.643;SOR=0.941 GT:AD:DP:GQ:PL 0/0:35,0:35:60:0,60,900 0/0:46,0:46:99:0,99,1485 0/0:48,0:48:99:0,105,1575 0/0:36,0:36:81:0,81,1215 0/0:25,0:25:60:0,60,900 0/0:39,0:39:99:0,99,1485 0/0:14,0:14:30:0,30,450 0/0:25,0:25:60:0,60,900 0/0:32,0:32:81:0,81,1215 0/0:61,0:61:99:0,117,1755 0/0:29,0:29:72:0,72,1080 0/0:16,0:16:36:0,36,540 ./.:0,0:0 0/0:27,0:27:65:0,65,990 0/0:17,0:17:36:0,36,540 0/0:43,0:43:99:0,99,1485 0/0:26,0:26:72:0,72,1080 0/0:40,0:40:99:0,102,1530 0/0:42,0:42:99:0,102,1530 0/0:3,0:3:6:0,6,90 0/0:35,0:35:72:0,72,1080 0/0:40,0:40:99:0,99,1485 0/0:26,0:26:60:0,60,900 0/0:42,0:42:99:0,99,1521 0/0:18,0:18:42:0,42,630 0/0:6,0:6:6:0,6,90 0/0:18,0:18:42:0,42,630 0/0:25,0:25:54:0,54,810 0/0:21,0:21:57:0,57,855 0/0:23,0:23:60:0,60,900 0/0:19,0:19:27:0,27,673 0/0:27,0:27:60:0,60,900 0/0:19,0:19:51:0,51,765 0/0:31,0:31:66:0,66,990 0/0:33,0:33:81:0,81,1215 0/0:43,0:43:99:0,99,1415 0/0:22,0:22:47:0,47,795 0/0:31,0:31:75:0,75,1125 0/0:18,0:18:48:0,48,720 0/0:25,0:25:60:0,60,900 0/0:27,0:27:60:0,60,900 0/0:22,0:22:57:0,57,855 0/0:21,0:21:42:0,42,630 0/0:23,0:23:45:0,45,675 0/0:23,0:23:60:0,60,900 0/0:41,0:41:99:0,99,1485 0/0:40,0:40:81:0,81,1215 0/0:42,0:42:99:0,99,1485 0/0:31,0:31:72:0,72,1080 0/0:24,0:24:51:0,51,765 0/0:28,0:28:60:0,60,900 0/0:26,0:26:60:0,60,900 0/0:21,0:21:48:0,48,720 0/1:9,18:27:99:572,0,271 0/0:34,0:34:60:0,60,900 ./.:0,0:0 0/0:37,0:37:99:0,99,1370 0/0:34,0:34:99:0,99,1306 0/0:25,0:25:60:0,60,900 0/0:31,0:31:78:0,78,1170 0/0:39,0:39:99:0,99,1485 0/0:16,0:16:33:0,33,495 0/0:22,0:22:51:0,51,765 0/0:20,0:20:57:0,57,855 0/0:30,0:30:90:0,90,1075 0/0:33,0:33:72:0,72,1080 0/0:23,0:23:60:0,60,900 0/0:30,0:30:60:0,60,900 0/0:26,0:26:63:0,63,945 0/0:15,0:15:45:0,45,576 0/0:31,0:31:72:0,72,1080 0/0:25,0:25:48:0,48,720 0/0:27,0:27:57:0,57,855 0/0:40,0:40:99:0,99,1485 0/0:38,0:38:99:0,99,1485 0/0:40,0:40:99:0,99,1462 0/0:40,0:40:99:0,99,1485 0/0:45,0:45:99:0,102,1530 0/0:43,0:43:99:0,105,1511 0/0:32,0:32:90:0,90,1350 0/0:22,0:22:45:0,45,675 0/0:38,0:38:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/0:22,0:22:54:0,54,810 0/0:9,0:9:27:0,27,344 0/0:40,0:40:99:0,99,1485 0/0:37,0:37:99:0,99,1485 0/0:43,0:43:99:0,99,1485 0/1:10,6:16:99:186,0,329 0/0:19,0:19:42:0,42,630 0/0:31,0:31:72:0,72,1080 0/0:44,0:44:99:0,99,1485 0/0:24,0:24:60:0,60,900 0/0:1,0:1:3:0,3,36 0/0:28,0:28:63:0,63,945 0/0:41,0:41:90:0,90,1350 0/0:21,0:21:51:0,51,765 0/0:34,0:34:72:0,72,1080 0/0:45,0:45:99:0,99,1485 0/0:25,0:25:42:0,42,630 1 36438765 rs146582776 A G 295.45 . AC=2;AF=0.011;AN=190;BaseQRankSum=1.95;ClippingRankSum=1.92;DB;DP=1084;FS=0.000;InbreedingCoeff=-0.0197;MLEAC=2;MLEAF=0.011;MQ=58.33;MQRankSum=-3.220e-01;QD=14.07;ReadPosRankSum=1.20;SOR=0.784 GT:AD:DP:GQ:PL 0/0:7,0:7:18:0,18,270 0/0:13,0:13:36:0,36,540 0/0:19,0:19:48:0,48,720 0/0:10,0:10:27:0,27,405 0/0:7,0:7:18:0,18,270 0/0:17,0:17:42:0,42,630 0/0:8,0:8:18:0,18,270 0/0:7,0:7:21:0,21,265 0/0:6,0:6:15:0,15,225 0/0:8,0:8:12:0,12,180 0/0:6,0:6:18:0,18,223 0/0:5,0:5:15:0,15,171 ./.:0,0:0 0/0:6,0:6:18:0,18,216 0/0:6,0:6:18:0,18,216 0/0:7,0:7:21:0,21,246 0/0:7,0:7:21:0,21,269 0/0:8,0:8:24:0,24,294 0/0:19,0:19:51:0,51,765 ./.:0,0:0 0/0:9,0:9:27:0,27,339 0/0:21,0:21:63:0,63,736 0/0:12,0:12:30:0,30,450 0/0:17,0:17:48:0,48,720 0/0:3,0:3:9:0,9,105 ./.:0,0:0 0/0:12,0:12:30:0,30,450 0/0:9,0:9:24:0,24,360 0/0:3,0:3:9:0,9,109 0/0:9,0:9:27:0,27,337 0/0:12,0:12:36:0,36,453 0/0:10,0:10:30:0,30,381 0/0:6,0:6:15:0,15,225 0/0:5,0:5:15:0,15,176 0/0:16,0:16:45:0,45,675 0/0:36,0:36:99:0,99,1485 0/0:8,0:8:21:0,21,315 0/0:14,0:14:39:0,39,585 0/0:8,0:8:24:0,24,297 0/0:7,0:7:21:0,21,254 0/0:7,0:7:18:0,18,270 0/0:9,0:9:27:0,27,338 0/0:10,0:10:30:0,30,368 0/0:5,0:5:12:0,12,180 0/0:15,0:15:42:0,42,630 0/0:14,0:14:39:0,39,585 0/0:10,0:10:27:0,27,405 0/0:21,0:21:60:0,60,900 0/0:5,0:5:12:0,12,180 0/0:5,0:5:9:0,9,135 0/0:19,0:19:45:0,45,675 0/0:5,0:5:15:0,15,178 0/0:13,0:13:39:0,39,498 0/0:13,0:13:39:0,39,484 0/0:4,0:4:9:0,9,135 ./.:0,0:0 0/0:15,0:15:42:0,42,630 0/0:33,0:33:90:0,90,1350 0/0:4,0:4:12:0,12,143 0/0:9,0:9:24:0,24,360 0/0:18,0:18:45:0,45,675 0/0:13,0:13:39:0,39,479 0/0:13,0:13:39:0,39,498 0/0:12,0:12:36:0,36,433 0/0:9,0:9:24:0,24,360 0/0:5,0:5:15:0,15,182 0/1:7,6:13:99:199,0,231 0/0:12,0:12:36:0,36,445 0/0:3,0:3:6:0,6,90 0/0:3,0:3:9:0,9,119 0/0:11,0:11:33:0,33,418 0/0:17,0:17:48:0,48,720 0/0:14,0:14:36:0,36,540 0/0:15,0:15:42:0,42,630 0/0:14,0:14:30:0,30,450 0/0:11,0:11:27:0,27,405 0/0:13,0:13:39:0,39,493 0/0:39,0:39:99:0,102,1530 0/0:11,0:11:27:0,27,405 0/0:14,0:14:39:0,39,585 0/0:6,0:6:18:0,18,212 0/0:19,0:19:51:0,51,765 0/0:17,0:17:39:0,39,585 0/0:13,0:13:39:0,39,461 0/0:4,0:4:12:0,12,117 0/0:38,0:38:99:0,102,1385 0/0:13,0:13:33:0,33,495 0/0:12,0:12:27:0,27,405 0/0:7,0:7:21:0,21,264 0/0:7,0:7:18:0,18,270 0/0:7,0:7:18:0,18,270 0/0:17,0:17:48:0,48,720 0/0:10,0:10:27:0,27,405 ./.:0,0:0 0/1:3,5:8:90:155,0,90 0/0:22,0:22:63:0,63,806 0/0:8,0:8:24:0,24,289 0/0:4,0:4:12:0,12,147 0/0:9,0:9:21:0,21,315 0/0:3,0:3:9:0,9,82