Found 17 candidate haplotypes to evaluate every read against. TGAGACACTATTCAGTCCTGCCTTCCTGCCCCCTTGGGAGTCCCTGGGGCTCTGTGCACTCACCAATCATGATGCCGGAGAAAGCCAGGACCAGGGCGGCCACGAGGGCAGAGGTCACCACAGAGAGGATCA GCGAGAGTGGCAGGTGTGGCTCCGGGGTGGGTGACACTGGAAGACAGGTCCCACTGGGGTATTGACAACCACACCAGGTCTCCTTTGAGTTGGTCCCAAGTCAGAAATAACCTCCCCCACTGAGACAAAAAC T > Cigar = 265M TGAGACACTATTCAGTCCTGCCTTCCTGCCCCCTTGGGAGTCCCTGGGGCTCTGTGCACTCACCAATCATGATGCCGGAGAAAGCCAGGACCAGGGCGGCCACGAGGGCAGAGGTCACCACAGAGAGGATCA GCGAGAGTGGCAGGTGTGGCTCCTGGGTGGGTGACACTGGAAGACAGGTCCCACTGGGGTATTGACAACCACACCAGGTCTCCTTTGAGTTGGTCCCAAGTCAGAAATAACCTCCCCCACTGAGACAAAAAC T > Cigar = 265M TGAGACACTATTCAGTCCTGCCTTCCTGCCCCCTTGGGAGTCCCTGGGGCTCTGTGCACTCACCAATCATGATGCCGGAGAAAGCCAGGACCAGGGCGGCCACGAGGGCAGAGGTCACCACAGAGAGGATCA GCGAGAGTGGCAGGTGTGGCTCCGGGGTGGGTGACACTGGAAGACAGGTCCCACTGGGGTATTGACAACCACACCAGGTCTCCTTTGAGTTGGTCCAAAGTCAGAAATAACCTCCCCCACTGAGACAAAAAC T > Cigar = 265M TGAGACACTATTCAGTCCTGCCTTCCTGCCCCCTTGGGAGTCCCTGGGGCTCTGTGCACTCACCAATCATGATGCCGGAGAAAGCCAGGACCAGGGCGGCCACGAGGGCAGAGGTCACCACAGAGAGGATCAGCGAGAGTGGCAGGTGTGGCTCCTGGGTGGGTGACACTGGAAGACAGGTCCCACTGGGGTATTGACAACCACACCAGGTCTCCTTTGAGTTGGTCCAAAGTCAGAAATAACCTCCCCCACTGAGACAAAAACT > Cigar = 265M TGAGACACTATTCAGTCCTGCCTTCCTGCCCCCTTGGGAGTCCCTTGGGCTCTGTGCACTCACCAATCATGATGCCGGAGAAAGCCAGGACCAGGGCGGCCACGAGGGCAGAGGTCACCACAGAGAGGATCAGCGAGAGTGGCAGGTGTGGCTCCGGGGTGGGTGACACTGGAAGACAGGTCCCACTGGGGTATTGACAACCACACCAGGTCTCCTTTGAGTTGGTCCCAAGTCAGAAATAACCTCCCCCACTGAGACAAAAACT > Cigar = 265M TGAGACACTATTCAGTCCTGCCTTCCTGCCCCCTTGGGAGTCCCTGGGGCTCTGTGCACTCACCAATCATGATGCCGGAGAAAGCCAGGACCAGGGCGGCCACGAGGGCAGAGGTCACCACAGAGAGGATCAGCGAGAGTGGCAGGGGGGGGTGGGTGACACTGGAAGACAGGTCCCACTGGGGTATTGACAACCACACCAGGTCTCCTTTGAGTTGGTCCCAAGTCAGAAATAACCTCCCCCACTGAGACAAAAACT > Cigar = 148M7D110M TGAGACACTATTCAGTCCTGCCTTCCTGCCCCCTTGGGAGTCCCTGGGGCTCTGTGCACTCACCAATCATGATGCCGGAGAAAGCCAGGACCAGGGCGGCCACGAGGGCAGAGGTCACCACAGAGAGGATCAGCGAGAGTGGCAGGGGTGGCTCCGGGGTGGGTGACACTGGAAGACAGGTCCCACTGGGGTATTGACAACCACACCAGGTCTCCTTTGAGTTGGTCCCAAGTCAGAAATAACCTCCCCCACTGAGACAAAAACT > Cigar = 265M TGAGACACTATTCAGTCCTGCCTTCCTGCCCCCTTGGGAGTCCCTGGGGCTCTGTGCACTCACCAATCATTATGCCGGAGAAAGCCAGGACCAGGGCGGCCACGAGGGCAGAGGTCACCACAGAGAGGATCAGCGAGAGTGGCAGGTGTGGCTCCGGGGTGGGTGACACTGGAAGACAGGTCCCACTGGGGTATTGACAACCACACCAGGTCTCCTTTGAGTTGGTCCCAAGTCAGAAATAACCTCCCCCACTGAGACAAAAACT > Cigar = 265M TGAGACACTATTCAGTCCTGCCTTCCTGCCCCCTTGGGAGTCCCTGGGGCTCTGTGCACTCACCAATCATGATGCCGGATAAAGCCAGGACCAGGGCGGCCACGAGGGCAGAGGTCACCACAGAGAGGATCAGCGAGAGTGGCAGGTGTGGCTCCGGGGTGGGTGACACTGGAAGACAGGTCCCACTGGGGTATTGACAACCACACCAGGTCTCCTTTGAGTTGGTCCCAAGTCAGAAATAACCTCCCCCACTGAGACAAAAACT > Cigar = 265M TGAGACACTATTCAGTCCTGCCTTCCTGCCCCCTTGGGAGTCCCTTGGGCTCTGTGCACTCACCAATCATGATGCCGGAGAAAGCCAGGACCAGGGCGGCCACGAGGGCAGAGGTCACCACAGAGAGGATCAGCGAGAGTGGCAGGTGTGGCTCCTGGGTGGGTGACACTGGAAGACAGGTCCCACTGGGGTATTGACAACCACACCAGGTCTCCTTTGAGTTGGTCCCAAGTCAGAAATAACCTCCCCCACTGAGACAAAAACT > Cigar = 265M TGAGACACTATTCAGTCCTGCCTTCCTGCCCCCTTGGGAGTCCCTGGGGCTCTGTGCACTCACCAATCATGATGCCGGATAAAGCCAGGACCAGGGCGGCCACGAGGGCAGAGGTCACCACAGAGAGGATCAGCGAGAGTGGCAGGTGTGGCTCCGGGGTGGGTGACACTGGAAGACAGGTCCCACTGGGGTATTGACAACCACACCAGGTCTCCTTTGAGTTGGTCCCAAGTCAGAAATAACCTCCCCCACTGAGACAAAAACT > Cigar = 265M TGAGACACTATTCAGTCCTGCCTTCCTGCCCCCTTGGGAGTCCCTTGGGCTCTGTGCACTCACCAATCATGATGCCGGAGAAAGCCAGGACCAGGGCGGCCACGAGGGCAGAGGTCACCACAGAGAGGATCAGCGAGAGTGGCAGGTGTGGCTCCTGGGTGGGTGACACTGGAAGACAGGTCCCACTGGGGTATTGACAACCACACCAGGTCTCCTTTGAGTTGGTCCCAAGTCAGAAATAACCTCCCCCACTGAGACAAAAACT > Cigar = 265M TGAGACACTATTCAGTCCTGCCTTCCTGCCCCCTTGGGAGTCCCTTGGGCTCTGTGCACTCACCAATCATGATGCCGGAGAAAGCCAGGACCAGGGCGGCCACGAGGGCAGAGGTCACCACAGAGAGGATCAGCGAGAGTGGCAGGTGTGGCTCCGGGGTGGGTGACACTGGAAGACAGGTCCCACTGGGGTATTGACAACCACACCAGGTCTCCTTTGAGTTGGTCCAAAGTCAGAAATAACCTCCCCCACTGAGACAAAAACT > Cigar = 265M TGAGACACTATTCAGTCCTGCCTTCCTGCCCCCTTGGGAGTCCCTGGGGCTCTGTGCACTCACCAATCATGATGCCGGAGAAAGCCAGTACCAGGGCGGCCACGAGGGCAGAGGTCACCACAGAGAGGATCAGCGAGAGTGGCAGGTGTGGCTCCGGGGTGGGTGACACTGGAAGACAGGTCCCACTGGGGTATTGACAACCACACCAGGTCTCCTTTGAGTTGGTCCCAAGTCAGAAATAACCTCCCCCACTGAGACAAAAACT > Cigar = 265M TGAGACACTATTCAGTCCTGCCTTCCTGCCCCCTTGGGAGTCCCTGGGGCTCTGTGCACTCACCAATCATGATGCCGGAGAAAGCCAGGACCAGGGCGGCCACGAGGGCAGAGGTCACCACAGAGAGGATCAGCGAGAGTTGCAGGTGTGGCTCCGGGGTGGGTGACACTGGAAGACAGGTCCCACTGGGGTATTGACAACCACACCAGGTCTCCTTTGAGTTGGTCCCAAGTCAGAAATAACCTCCCCCACTGAGACAAAAACT > Cigar = 265M TGAGACACTATTCAGTCCTGCCTTCCTGCCCCCTTGGGAGTCCCTTGGGCTCTGTGCACTCACCAATCATGATGCCGGAGAAAGCCAGGACCAGGGCGGCCACGAGGGCAGAGGTCACCACAGAGAGGATCAGCGAGAGTGGCAGGGGGGGGTGGGTGACACTGGAAGACAGGTCCCACTGGGGTATTGACAACCACACCAGGTCTCCTTTGAGTTGGTCCCAAGTCAGAAATAACCTCCCCCACTGAGACAAAAACT > Cigar = 148M7D110M TGAGACACTATTCAGTCCTGCCTTCCTGCCCCCTTGGGAGTCCCTTGGGCTCTGTGCACTCACCAATCATGATGCCGGAGAAAGCCAGGACCAGGGCGGCCACGAGGGCAGAGGTCACCACAGAGAGGATCAGCGAGAGTGGCAGGGGTGGCTCCGGGGTGGGTGACACTGGAAGACAGGTCCCACTGGGGTATTGACAACCACACCAGGTCTCCTTTGAGTTGGTCCCAAGTCAGAAATAACCTCCCCCACTGAGACAAAAACT > Cigar = 265M TGAGACACTATTCAGTCCTGCCTTCCTGCCCCCTTGGGAGTCCCTGGGGCTCTGTGCACTCACCAATCATGATGCCGGAGAAAGCCAGGACCAGGGCGGCCACGAGGGCAGAGGTCACCACAGAGAGGATCAGCGAGAGTTGCAGGTGTGGCTCCGGGGTGGGTGACACTGGAAGACAGGTCCCACTGGGGTATTGACAACCACACCAGGTCTCCTTTGAGTTGGTCCAAAGTCAGAAATAACCTCCCCCACTGAGACAAAAACT > Cigar = 265M TGAGACACTATTCAGTCCTGCCTTCCTGCCCCCTTGGGAGTCCCTGGGGCTCTGTGCACTCACCAATCATGATGCCGGAGAAAGCCAGGACCAGTGCGGCCACGAGGGCAGAGGTCACCACAGAGAGGATCAGCGAGAGTGGCAGGTGTGGCTCCGGGGTGGGTGACACTGGAAGACAGGTCCCACTGGGGTATTGACAACCACACCAGGTCTCCTTTGAGTTGGTCCCAAGTCAGAAATAACCTCCCCCACTGAGACAAAAACT > Cigar = 265M Chose haplotypes 3 and 0 with diploid likelihood = 0.0 Chose haplotypes 3 and 1 with diploid likelihood = -33.363330595670504 Chose haplotypes 12 and 3 with diploid likelihood = -186.73943846907878 Chose haplotypes 13 and 3 with diploid likelihood = -219.54447909289001 Chose haplotypes 3 and 3 with diploid likelihood = -243.1543217112428 Chose haplotypes 3 and 2 with diploid likelihood = -416.4173137480452 Chose haplotypes 5 and 3 with diploid likelihood = -471.9093783762671 Chose haplotypes 15 and 3 with diploid likelihood = -475.7109269385826 Chose haplotypes 11 and 3 with diploid likelihood = -505.8808930893101 Chose haplotypes 10 and 3 with diploid likelihood = -518.1079780625139 Chose haplotypes 9 and 3 with diploid likelihood = -530.4727747866712 Chose haplotypes 8 and 3 with diploid likelihood = -532.424665494073 Chose haplotypes 7 and 3 with diploid likelihood = -556.6138938379854 Chose 12 alternate haplotypes to genotype in all samples. === Best Haplotypes === TGAGACACTATTCAGTCCTGCCTTCCTGCCCCCTTGGGAGTCCCTGGGGCTCTGTGCACTCACCAATCATGATGCCGGAGAAAGCCAGGACCAGGGCGGCCACGAGGGCAGAGGTCACCACAGAGAGGATCA GCGAGAGTGGCAGGTGTGGCTCCGGGGTGGGTGACACTGGAAGACAGGTCCCACTGGGGTATTGACAACCACACCAGGTCTCCTTTGAGTTGGTCCCAAGTCAGAAATAACCTCCCCCACTGAGACAAAAAC T > Cigar = 265M > Left and right breaks = (0 , 0) >> Events = {} TGAGACACTATTCAGTCCTGCCTTCCTGCCCCCTTGGGAGTCCCTGGGGCTCTGTGCACTCACCAATCATGATGCCGGAGAAAGCCAGGACCAGGGCGGCCACGAGGGCAGAGGTCACCACAGAGAGGATCA GCGAGAGTGGCAGGGGGGGGTGGGTGACACTGGAAGACAGGTCCCACTGGGGTATTGACAACCACACCAGGTCTCCTTTGAGTTGGTCCCAAGTCAGAAATAACCTCCCCCACTGAGACAAAAACT > Cigar = 148M7D110M > Left and right breaks = (0 , 152) >> Events = {=[VC HC1 @ Q. of type=INDEL alleles=[GTGGCTCC*, G] attr={} GT=[], *410=[VC HC1 @ chr Q. of type=SNP alleles=[T*, G] attr={} GT=[]} TGAGACACTATTCAGTCCTGCCTTCCTGCCCCCTTGGGAGTCCCTGGGGCTCTGTGCACTCACCAATCATGATGCCGGAGAAAGCCAGGACCAGGGCGGCCACGAGGGCAGAGGTCACCACAGAGAGGATCA GCGAGAGTGGCAGGGGTGGCTCCGGGGTGGGTGACACTGGAAGACAGGTCCCACTGGGGTATTGACAACCACACCAGGTCTCCTTTGAGTTGGTCCCAAGTCAGAAATAACCTCCCCCACTGAGACAAAAAC T > Cigar = 265M > Left and right breaks = (0 , 151) >> Events = {*410=[VC HC2 @ chr*:*410 Q. of type=SNP alleles=[T*, G] attr={} GT=[]} TGAGACACTATTCAGTCCTGCCTTCCTGCCCCCTTGGGAGTCCCTTGGGCTCTGTGCACTCACCAATCATGATGCCGGAGAAAGCCAGGACCAGGGCGGCCACGAGGGCAGAGGTCACCACAGAGAGGATCA GCGAGAGTGGCAGGGGGGGGTGGGTGACACTGGAAGACAGGTCCCACTGGGGTATTGACAACCACACCAGGTCTCCTTTGAGTTGGTCCCAAGTCAGAAATAACCTCCCCCACTGAGACAAAAACT > Cigar = 148M7D110M > Left and right breaks = (36 , 152) >> Events = {*309=[VC HC3 @ chr*:*309 Q. of type=SNP alleles=[G*, T] attr={} GT=[], *411=[VC HC3 @ chr*:*411-*41 8 Q. of type=INDEL alleles=[GTGGCTCC*, G] attr={} GT=[], *410=[VC HC3 @ chr*:*410 Q. of type=SNP alleles=[T*, G] attr={} GT= []} TGAGACACTATTCAGTCCTGCCTTCCTGCCCCCTTGGGAGTCCCTTGGGCTCTGTGCACTCACCAATCATGATGCCGGAGAAAGCCAGGACCAGGGCGGCCACGAGGGCAGAGGTCACCACAGAGAGGATCA GCGAGAGTGGCAGGGGTGGCTCCGGGGTGGGTGACACTGGAAGACAGGTCCCACTGGGGTATTGACAACCACACCAGGTCTCCTTTGAGTTGGTCCCAAGTCAGAAATAACCTCCCCCACTGAGACAAAAAC T > Cigar = 265M > Left and right breaks = (36 , 149) >> Events = {*309=[VC HC4 @ chr*:*309 Q. of type=SNP alleles=[G*, T] attr={} GT=[], *410=[VC HC4 @ chr*:*410 Q. of t ype=SNP alleles=[T*, G] attr={} GT=[]} TGAGACACTATTCAGTCCTGCCTTCCTGCCCCCTTGGGAGTCCCTGGGGCTCTGTGCACTCACCAATCATGATGCCGGAGAAAGCCAGGACCAGGGCGGCCACGAGGGCAGAGGTCACCACAGAGAGGATCA GCGAGAGTGGCAGGTGTGGCTCCGGGGTGGGTGACACTGGAAGACAGGTCCCACTGGGGTATTGACAACCACACCAGGTCTCCTTTGAGTTGGTCCAAAGTCAGAAATAACCTCCCCCACTGAGACAAAAACT > Cigar = 265M > Left and right breaks = (0 , 236) >> Events = {*492=[VC HC5 @ chr*:*492 Q. of type=SNP alleles=[C*, A] attr={} GT=[]} TGAGACACTATTCAGTCCTGCCTTCCTGCCCCCTTGGGAGTCCCTGGGGCTCTGTGCACTCACCAATCATGATGCCGGAGAAAGCCAGGACCAGGGCGGCCACGAGGGCAGAGGTCACCACAGAGAGGATCAGCGAGAGTGGCAGGTGTGGCTCCTGGGTGGGTGACACTGGAAGACAGGTCCCACTGGGGTATTGACAACCACACCAGGTCTCCTTTGAGTTGGTCCCAAGTCAGAAATAACCTCCCCCACTGAGACAAAAACT > Cigar = 265M > Left and right breaks = (0 , 0) >> Events = {*419=[VC HC6 @ chr*:*419 Q. of type=SNP alleles=[G*, T] attr={} GT=[]} TGAGACACTATTCAGTCCTGCCTTCCTGCCCCCTTGGGAGTCCCTTGGGCTCTGTGCACTCACCAATCATGATGCCGGAGAAAGCCAGGACCAGGGCGGCCACGAGGGCAGAGGTCACCACAGAGAGGATCAGCGAGAGTGGCAGGTGTGGCTCCGGGGTGGGTGACACTGGAAGACAGGTCCCACTGGGGTATTGACAACCACACCAGGTCTCCTTTGAGTTGGTCCCAAGTCAGAAATAACCTCCCCCACTGAGACAAAAACT > Cigar = 265M > Left and right breaks = (36 , 0) >> Events = {*309=[VC HC7 @ chr*:*309 Q. of type=SNP alleles=[G*, T] attr={} GT=[]} TGAGACACTATTCAGTCCTGCCTTCCTGCCCCCTTGGGAGTCCCTGGGGCTCTGTGCACTCACCAATCATTATGCCGGAGAAAGCCAGGACCAGGGCGGCCACGAGGGCAGAGGTCACCACAGAGAGGATCAGCGAGAGTGGCAGGTGTGGCTCCGGGGTGGGTGACACTGGAAGACAGGTCCCACTGGGGTATTGACAACCACACCAGGTCTCCTTTGAGTTGGTCCCAAGTCAGAAATAACCTCCCCCACTGAGACAAAAACT > Cigar = 265M > Left and right breaks = (47 , 0) >> Events = {*334=[VC HC8 @ chr*:*334 Q. of type=SNP alleles=[G*, T] attr={} GT=[]} TGAGACACTATTCAGTCCTGCCTTCCTGCCCCCTTGGGAGTCCCTGGGGCTCTGTGCACTCACCAATCATGATGCCGGATAAAGCCAGGACCAGGGCGGCCACGAGGGCAGAGGTCACCACAGAGAGGATCAGCGAGAGTGGCAGGTGTGGCTCCGGGGTGGGTGACACTGGAAGACAGGTCCCACTGGGGTATTGACAACCACACCAGGTCTCCTTTGAGTTGGTCCCAAGTCAGAAATAACCTCCCCCACTGAGACAAAAACT > Cigar = 265M > Left and right breaks = (79 , 0) >> Events = {*343=[VC HC9 @ chr*:*343 Q. of type=SNP alleles=[G*, T] attr={} GT=[]} TGAGACACTATTCAGTCCTGCCTTCCTGCCCCCTTGGGAGTCCCTGGGGCTCTGTGCACTCACCAATCATGATGCCGGAGAAAGCCAGTACCAGGGCGGCCACGAGGGCAGAGGTCACCACAGAGAGGATCAGCGAGAGTGGCAGGTGTGGCTCCGGGGTGGGTGACACTGGAAGACAGGTCCCACTGGGGTATTGACAACCACACCAGGTCTCCTTTGAGTTGGTCCCAAGTCAGAAATAACCTCCCCCACTGAGACAAAAACT > Cigar = 265M > Left and right breaks = (79 , 0) >> Events = {*352=[VC HC10 @ chr*:*352 Q. of type=SNP alleles=[G*, T] attr={} GT=[]} >> Events = {*352=[VC HC10 @ chr*:*352 Q. of type=SNP alleles=[G*, T] attr={} GT=[]} TGAGACACTATTCAGTCCTGCCTTCCTGCCCCCTTGGGAGTCCCTGGGGCTCTGTGCACTCACCAATCATGATGCCGGAGAAAGCCAGGACCAGTGCGGCCACGAGGGCAGAGGTCACCACAGAGAGGATCAGCGAGAGTGGCAGGTGTGGCTCCGGGGTGGGTGACACTGGAAGACAGGTCCCACTGGGGTATTGACAACCACACCAGGTCTCCTTTGAGTTGGTCCCAAGTCAGAAATAACCTCCCCCACTGAGACAAAAACT > Cigar = 265M > Left and right breaks = (0 , 99) >> Events = {*358=[VC HC11 @ chr*:*358 Q. of type=SNP alleles=[G*, T] attr={} GT=[]} TGAGACACTATTCAGTCCTGCCTTCCTGCCCCCTTGGGAGTCCCTGGGGCTCTGTGCACTCACCAATCATGATGCCGGAGAAAGCCAGGACCAGGGCGGCCACGAGGGCAGAGGTCACCACAGAGAGGATCAGCGAGAGTTGCAGGTGTGGCTCCGGGGTGGGTGACACTGGAAGACAGGTCCCACTGGGGTATTGACAACCACACCAGGTCTCCTTTGAGTTGGTCCCAAGTCAGAAATAACCTCCCCCACTGAGACAAAAACT > Cigar = 265M > Left and right breaks = (128 , 0) >> Events = {*404=[VC HC12 @ chr*:*404 Q. of type=SNP alleles=[G*, T] attr={} GT=[]} Genotyping event at *334 with alleles = [G*, T] Genotyping event at *343 with alleles = [G*, T] Genotyping event at *352 with alleles = [G*, T] Genotyping event at *358 with alleles = [G*, T] Genotyping event at *404 with alleles = [G*, T] >> Events = {*343=[VC HC9 @ chr*:*343 Q. of type=SNP alleles=[G*, T] attr={} GT=[]} TGAGACACTATTCAGTCCTGCCTTCCTGCCCCCTTGGGAGTCCCTGGGGCTCTGTGCACTCACCAATCATGATGCCGGAGAAAGCCAGTACCAGGGCGGCCACGAGGGCAGAGGTCACCACAGAGAGGATCA GCGAGAGTGGCAGGTGTGGCTCCGGGGTGGGTGACACTGGAAGACAGGTCCCACTGGGGTATTGACAACCACACCAGGTCTCCTTTGAGTTGGTCCCAAGTCAGAAATAACCTCCCCCACTGAGACAAAAAC T > Cigar = 265M > Left and right breaks = (79 , 0) >> Events = {*352=[VC HC10 @ chr*:*352 Q. of type=SNP alleles=[G*, T] attr={} GT=[]} TGAGACACTATTCAGTCCTGCCTTCCTGCCCCCTTGGGAGTCCCTGGGGCTCTGTGCACTCACCAATCATGATGCCGGAGAAAGCCAGGACCAGTGCGGCCACGAGGGCAGAGGTCACCACAGAGAGGATCA GCGAGAGTGGCAGGTGTGGCTCCGGGGTGGGTGACACTGGAAGACAGGTCCCACTGGGGTATTGACAACCACACCAGGTCTCCTTTGAGTTGGTCCCAAGTCAGAAATAACCTCCCCCACTGAGACAAAAAC T > Cigar = 265M > Left and right breaks = (0 , 99) >> Events = {*358=[VC HC11 @ chr*:*358 Q. of type=SNP alleles=[G*, T] attr={} GT=[]} TGAGACACTATTCAGTCCTGCCTTCCTGCCCCCTTGGGAGTCCCTGGGGCTCTGTGCACTCACCAATCATGATGCCGGAGAAAGCCAGGACCAGGGCGGCCACGAGGGCAGAGGTCACCACAGAGAGGATCA GCGAGAGTTGCAGGTGTGGCTCCGGGGTGGGTGACACTGGAAGACAGGTCCCACTGGGGTATTGACAACCACACCAGGTCTCCTTTGAGTTGGTCCCAAGTCAGAAATAACCTCCCCCACTGAGACAAAAAC T > Cigar = 265M > Left and right breaks = (128 , 0) >> Events = {*404=[VC HC12 @ chr*:*404 Q. of type=SNP alleles=[G*, T] attr={} GT=[]} Genotyping event at *334 with alleles = [G*, T] Genotyping event at *343 with alleles = [G*, T] Genotyping event at *352 with alleles = [G*, T] Genotyping event at *358 with alleles = [G*, T] Genotyping event at *404 with alleles = [G*, T] Genotyping event at *410 with alleles = [T*, G] Genotyping event at *411 with alleles = [GTGGCTCC*, G] Genotyping event at *419 with alleles = [G*, T] [VC UG_call @ chr*:*410 Q2515.34 of type=SNP alleles=[T*, G] attr={MLEAC=[6], MLEAF=[0.5]} [VC UG_call @ chr*:*411-*418 Q415.06 of type=INDEL alleles=[GTGGCTCC*, G] attr={MLEAC=[4], MLEAF=[0.3333333333333333]} ----------------------------------------------------------------------------------