@HD VN:1.0 SO:coordinate @SQ SN:scaffold79 LN:9663177 @SQ SN:scaffold277 LN:611250 @SQ SN:scaffold24662 LN:192 @SQ SN:scaffold46404 LN:122 @SQ SN:scaffold134 LN:4672454 @SQ SN:scaffold641 LN:15145 @SQ SN:scaffold8 LN:31866355 @SQ SN:scaffold131 LN:4918615 @SQ SN:scaffold124 LN:5295952 @SQ SN:scaffold207 LN:1929094 @SQ SN:scaffold1218 LN:3454 @SQ SN:scaffold6 LN:40277251 @SQ SN:scaffold296 LN:398389 @SQ SN:scaffold64 LN:12803319 @SQ SN:scaffold1782 LN:2070 @SQ SN:scaffold18 LN:22407316 @SQ SN:scaffold5 LN:41693076 @SQ SN:scaffold346 LN:148445 @SQ SN:scaffold281 LN:589062 @SQ SN:scaffold328 LN:195135 @SQ SN:scaffold308 LN:321586 @SQ SN:scaffold286 LN:468345 @SQ SN:scaffold214 LN:1645576 @SQ SN:scaffold245 LN:973361 @SQ SN:scaffold133 LN:4816047 @SQ SN:scaffold282 LN:586274 @SQ SN:scaffold102 LN:6982734 @SQ SN:scaffold442 LN:43622 @SQ SN:scaffold139 LN:4440729 @SQ SN:scaffold3 LN:53244476 @SQ SN:scaffold35 LN:18482212 @SQ SN:scaffold193 LN:2387313 @SQ SN:scaffold128 LN:5078987 @SQ SN:scaffold217 LN:1594120 @SQ SN:scaffold455 LN:41045 @SQ SN:scaffold33 LN:18642241 @SQ SN:scaffold16 LN:23054638 @SQ SN:scaffold103 LN:6971902 @SQ SN:scaffold146 LN:4156655 @SQ SN:scaffold165 LN:3288323 @SQ SN:scaffold27 LN:19727151 @SQ SN:scaffold150 LN:3898338 @SQ SN:scaffold116 LN:5597997 @SQ SN:scaffold298 LN:389435 @SQ SN:scaffold41 LN:16823045 @SQ SN:scaffold12885 LN:421 @SQ SN:scaffold73 LN:10683268 @SQ SN:scaffold25 LN:20270731 @SQ SN:scaffold263 LN:754331 @SQ SN:scaffold174 LN:2952444 @SQ SN:scaffold58 LN:13346048 @SQ SN:scaffold30 LN:19047857 @SQ SN:scaffold10 LN:29663373 @SQ SN:scaffold285 LN:522488 @SQ SN:scaffold176 LN:2915887 @SQ SN:scaffold136 LN:4614128 @SQ SN:scaffold66 LN:12483386 @SQ SN:scaffold149 LN:3994588 @SQ SN:scaffold248 LN:947286 @SQ SN:scaffold366 LN:113084 @SQ SN:scaffold17337 LN:307 @SQ SN:scaffold1108 LN:4130 @SQ SN:scaffold46 LN:15940661 @SQ SN:scaffold2 LN:55877296 @SQ SN:scaffold54 LN:14173813 @SQ SN:scaffold60 LN:13122742 @SQ SN:scaffold446 LN:42244 @SQ SN:scaffold472 LN:40238 @SQ SN:scaffold477 LN:40152 @SQ SN:scaffold459 LN:40922 @SQ SN:scaffold97 LN:7483021 @SQ SN:scaffold284 LN:553973 @SQ SN:scaffold84 LN:8522002 @SQ SN:scaffold159 LN:3547254 @SQ SN:scaffold24 LN:20586676 @SQ SN:scaffold57 LN:13742018 @SQ SN:scaffold107 LN:6386876 @SQ SN:scaffold196 LN:2291821 @SQ SN:scaffold63 LN:12846609 @SQ SN:scaffold310 LN:302125 @SQ SN:scaffold171 LN:3078631 @SQ SN:scaffold72214 LN:3 @SQ SN:scaffold48 LN:15825002 @SQ SN:scaffold15 LN:24260673 @SQ SN:scaffold130 LN:4947231 @SQ SN:scaffold38 LN:18037018 @SQ SN:scaffold37 LN:18322464 @SQ SN:scaffold464 LN:40579 @SQ SN:scaffold3053 LN:1261 @SQ SN:scaffold295 LN:406295 @SQ SN:scaffold173 LN:2975834 @SQ SN:scaffold463 LN:40618 @SQ SN:scaffold90 LN:8163341 @SQ SN:scaffold94 LN:7798381 @SQ SN:scaffold111 LN:6016729 @SQ SN:scaffold77 LN:10252110 @SQ SN:scaffold31 LN:10693394 @RG ID:1 PL:illumina PU:barcode LB:Library SM:km02 @PG ID:bwa PN:bwa VN:0.7.12-r1039 CL:/home/course/mauve_2.3.1/linux-x64/bwa-0.7.12/bwa mem -t 16 -p -M Ursus_maritimus.scaf.fa SRR1135309_1.fastq SRR1135309_2.fastq SRR1135309.60446863 16 scaffold79 305 60 101M * 0 0 AAGAATGGAATGACCATCGTGGGAAATGGAACAAGTATCCTGGACCTATAGGAAGCTTCTCTGGTTGTGATGAATGATGGTTTGAAATCTTTGGTTTTAAG AEDEDDEEDCDCCDDDDDFFFHGHHEHHHHEH@EIIHEJIJGHDIJIJJJJIJIJIHGIGIJJIIJIJJIIGGIIJJIJJJJJJJJIJHHHHHFFFFFCCC MD:Z:1G9A1T4T17G26A15A7C12A0 RG:Z:1 NM:i:9 AS:i:63 XS:i:0 SRR1135309.117809157 0 scaffold79 306 60 101M * 0 0 AGAATGGAATGACCATCGTGGGAAATGGAACAAGTATCCTGGACCTATAGGAAGCTTCTCTGGTTGTGATGAATGATGGTTTGAAATCTTTGGTTTTAAGA @@CFFFFFFHDFHGHGGGGHIJJJJIIFIIJJ@GCFIJJIIIGGIIIDIIIJJJJIHIIIIIIGII@EAEHFC@>BCDE>@ACCECDD@CCCA9AA@@CAC MD:Z:0G9A1T4T17G26A15A7C12A1 RG:Z:1 NM:i:9 AS:i:63 XS:i:0 SRR1135309.145255178 0 scaffold79 307 60 6S95M * 0 0 GCATAAGAATGGAATGACCATCGTGGGAAATGGAACAAGTATCCTGGACCTATAGGAAGCTTCTCTGGTTGTGATGAATGATGGTTTGAAATCTTTGGTTT CCCFFFFFHHHHHJJJJJJIJJJJIIJHIIJJJIJJJJJIIIIJJJJEHIIIIJJJIIIIJJJJJIHIEEHBEEFFFFFEDEEEEEDDDCDDDDDDCC?A< MD:Z:9A1T4T17G26A15A7C9 RG:Z:1 NM:i:7 AS:i:60 XS:i:0 SRR1135309.32271893 0 scaffold79 307 52 34S67M * 0 0 AGGAGCTCCTAAAGTTTTAAGGAATGAAGCATAAGAATGGAATGACCATCGTGGGAAATGGAACAAGTATCCTGGACCTATAGGAAGCTTCTCTGGTTGTG CCCFFFFFHHHHGJHIJJJJJIJJJJJJJIJIIJJJIJJJJJJIJJJJJJJHIJJJJJJJJJJJIIJEHGHFHHHFFFFDEDEDCEDBDDDDDDDD@CBDD MD:Z:9A1T4T17G26A5 RG:Z:1 NM:i:5 AS:i:42 XS:i:0 SRR1135309.188858849 16 scaffold79 307 60 25S76M * 0 0 TAAAGTTTTAAGGAATGAAGCATAAGAATGGAATGACCATCGTGGGAAATGGAACAAGTATCCTGGACCTATAGGAAGCTTCTCTGGTTGTGATGAATGAT @>@CC>;@CEECDCA@EC@@DEEEEEHA>EIHGDE@FIIIIIGIIIIGIIHHHIIIIHEFDHGIHFFGIIIIGIIIIGIGCBGE=IIIHHHGGFFFFFCCC MD:Z:9A1T4T17G26A14 RG:Z:1 NM:i:5 AS:i:51 XS:i:0 SRR1135309.197012462 16 scaffold79 307 60 20S81M * 0 0 TTTTAAGGAATGAAGCATAAGAATGGAATGACCATCGTGGGAAATGGAACAAGTATCCTGGACCTATAGGAAGCTTCTCTGGTTGTGATGAATGATGGTTT CCCDCDEEEEEEEEEEFFDFFFFFFHHHHECJJIJJJJIJJJJJJIJJJJJJIIJIIJJJIHJJJJJJJJJJIIJIIIGJJIJJIJJJHHHHHFFFFFCCC MD:Z:9A1T4T17G26A15A3 RG:Z:1 NM:i:6 AS:i:52 XS:i:0 SRR1135309.198728336 16 scaffold79 307 60 7S94M * 0 0 AGCATAAGAATGGAATGACCATCGTGGGAAATGGAACAAGTATCCTGGACCTATAGGAAGCTTCTCTGGTTGTGATGAATGATGGTTTGAAATCTTTGGTT DCDDDEDEDDDDDAEEA;CDFEFHEFIIIGHCGJHGIIJJJJIHHIHDBHCJIIJJIJIIHCGJIJIJJJJJJJIJIJJJIJJIJJJIGHHHFFFFFFCC@ MD:Z:9A1T4T17G26A15A7C8 RG:Z:1 NM:i:7 AS:i:59 XS:i:0 SRR1135309.41446497 16 scaffold79 307 60 29S72M * 0 0 CTCCTAAAGTTTTAAGGAATGAAGCATAAGAATGGAATGACCATCGTGGGAAATGGAACAAGTATCCTGGACCTATAGGAAGCTTCTCTGGTTGTGATGAA #@;>A>>C@;E@CA@ABBFFFEEHECCFEHBJIJHDEG@8?B7@CDFCEBBA@>>>@C?AHE=@GIGIIIIIII@FDBDBBDG9BAGFGIE>FIBDHIIIIAEEHH>ECBC@@CB;.;A@@;C@(5;5>@5 MD:Z:13G26A15A7C12A18C4 RG:Z:1 NM:i:6 AS:i:71 XS:i:0 SRR1135309.147920205 16 scaffold79 331 60 101M * 0 0 TGGAACAAGTATCCTGGACCTATAGGAAGCTTCTCTGGTTGTGATGAATGATGGTTTGAAATCTTTGGTTTTAAGAAGGAAGTGAGATTCATATAGGTGGA @DCDCCDCDCADCECFFEFFFHHHHAHJJIJIIIDIJIJJJJJJJJIJJJIJIJJJJJIIGIIJJIJIJJJJJJIIJJJJIHIGIIGGHHHHHFFFFF@C@ MD:Z:10G26A15A7C12A18C5A1 RG:Z:1 NM:i:7 AS:i:69 XS:i:0 SRR1135309.26323214 0 scaffold79 342 60 101M * 0 0 TCCTGGACCTATAGGAAGCTTCTCTGGTTGTGATGAATGATGGTTTGAAATCTTTGGTTTTAAGAAGGAAGTGAGATTCATATAGGTGGAGCATATAGCTT @@CDFFDDHFHHDIIJJJJIGGBHEHGHHIHIGHGHFGGIJIGFGHGCHIIJIIHHIHGHIHIEGGCH@CA.=;?CEEDFFFFFCC>AA=;ABACCDCCCC MD:Z:26A15A7C12A18C5A4G7 RG:Z:1 NM:i:7 AS:i:66 XS:i:0 SRR1135309.93266114 16 scaffold79 342 60 101M * 0 0 TCCTGGACCTATAGGAAGCTTCTCTGGTTGTGATGAATGATGGTTTGAAATCTTTGGTTTTAAGAAGGAAGTGAGATTCATATAGGTGGAGCATATAGCTT BCDDDDDDEEECEEDFFFFFHHHHGIJIIIJIJJJJJJJJIGIIIEJJIGIJIJJJJJJIIJJJJJJJJJJIJJJIJJJJJIIIJJJJHHHHHFFFFFC@C MD:Z:26A15A7C12A18C5A4G7 RG:Z:1 NM:i:7 AS:i:66 XS:i:0 SRR1135309.138813569 16 scaffold79 362 60 95M6S * 0 0 TCTCTGGTTGTGATGAATGATGGTTTGAAATCTTTGGTTTTAAGAAGGAAGTGAGATTCATACAGGTCGAGCATATAGCTTTTAGCGGAGTTGTGGCATTG ?CGIIIIGIIGGFBEHHD?DDFFFF@@@ MD:Z:6A15A7C12A23G0A4G8C12 RG:Z:1 NM:i:8 AS:i:55 XS:i:0 SRR1135309.123722284 0 scaffold79 572 32 2S10M1I39M49S * 0 0 AATCAATTTTTTAAAAATAATAAGCTACTGATAGGTAAAGGAATATCTCAATGGGGATATTAATAGATTAGTATTAAGAAAGTAAGTGGGCTAAAGGTGCT CCCFFFFFHHHHHJJJJJJJJJIIJJJJJJGIIIJGHIJJJIJJJJJJJJJJIJJJJJIJJJJIIIIJJJJIJJJHHGHHHFBEFFBDECDCBDDDCCCDA MD:Z:20A3G24 RG:Z:1 NM:i:3 AS:i:32 XS:i:20 SRR1135309.200783527 0 scaffold79 572 29 10S10M1I39M41S * 0 0 GACAGTGTAATCAATTTTTTAAAAATAATAAGCTACTGATAGGTAAAGGAATATCTCAATGGGGATATTAATAGATTAGTATTAAGAAAGTAAGTGGGCTA @@@FFBDBFFHHFEGIJJJIJJJIIIIJJJIGIJIJIJGHDGE?FEGHIJJJIIIGHEHHIJDIGAEAHGGEHIHFHHH>ECDFDFDDEEECACB@CD@C@ MD:Z:20A3G24 RG:Z:1 NM:i:3 AS:i:32 XS:i:21 SRR1135309.95622239 0 scaffold79 572 29 45S10M1I39M6S * 0 0 ACCAGTTCCAAGTCAGAGGGAATCTGTGATGCCAGGACAGTGTAATCAATTTTTTAAAAATAATAAGCTACTGATAGGTAAAGGAATATCTCAATGGGGAT CCCFFDFFHHHHFIJJJJJJIIHJIJDHIJIIJJJJJGIJGIFGIGJJIIIJJJJJJIJJJJJJJIIIIJJGHHHEHC@CCFFEEEECCDDDDDDDDDDDB MD:Z:20A3G24 RG:Z:1 NM:i:3 AS:i:32 XS:i:21 SRR1135309.146061978 16 scaffold79 573 49 9M1I39M52S * 0 0 CAATTTTTTAAAAATAATAAGCTACTGATAGGTAAAGGAATATCTCAATGGGGATATTAATAGATTAGTATTAAGAAAGTAAGTGGGCTAAAGGTGCTGAT @DDBEEEFFFFFHHGHHGHJIJJIIGJJJJJIJJJIJJJJJJIJJJJJIJJIJJJJJJJJJJJJJIJJJJIJJJGJJJJJJJJIJJJJHHHHHFFFFFCCC MD:Z:19A3G24 RG:Z:1 NM:i:3 AS:i:31 XS:i:20 SRR1135309.44132907 0 scaffold79 576 50 6M1I39M55S * 0 0 TTTTTTAAAAATAATAAGCTACTGATAGGTAAAGGAATATCTCAATGGGGATATTAATAGATTAGTATTAAGAAAGTAAGTGGGCTAAAGGTGCTGATGTT @@@DDDDDHHFFHIGIEHG>:FGEHEDGC:CEEHGIGIEIGHIGGIIGIAFDDGEF8=FGGGGCH@FHHEHBDEHHE?AE))7?BCCCCCC(5@CCC;>@: MD:Z:16A3G24 RG:Z:1 NM:i:3 AS:i:30 XS:i:0